mRNA_E-siliculosus-1a_F_contig1249.1545.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1249.1545.1
Unique NamemRNA_E-siliculosus-1a_F_contig1249.1545.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1249.1545.1 vs. uniprot
Match: D8LHL2_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHL2_ECTSI)

HSP 1 Score: 667 bits (1721), Expect = 3.120e-240
Identity = 358/382 (93.72%), Postives = 364/382 (95.29%), Query Frame = 1 
Query:    1 MRRGPADKRLAQGHDTELEEDGVEDGVKTLWKRENEKEGVGLGGKPTVGGCEVGGSSSRPSPSSSSSSLDGTQGGRPCWPQSPWLSSARSRKKNSGKEAGAGAGNRFEVIAEESINAATRDQEVKRRATDEAHTVESGARHRLEMAKSTKNDIYERLQGCWQRCLEPTKLELHRLEKMLDDCSDVLPTAEESARRARDVARSAENIYALVRHSASHARQAHESAREEVLFPPLLCDDYGALLRAQHRTREALVKAIQSVKNARGQVEGARAAVKNAVEIIGVEPFRRAFLADKVAEAKRRHKEVNTNYEALEVERKRAVNKEKKAAATYKEAAIRDGAAIIAFQAAQRQTARTRATFSLLTCGRGGSKRGEAESFLAREGGE 1146
            MRRG A KR  +GHDTELEEDGVE+GVKTLWKRENEKEGV LGGKPTVGGCEV GSSSRPSP SSSSSLDGTQGGRPCWPQSPWLSS  SRKK  G+EA AGAGNRFEVIAEESINAA RDQEVKRR  DEAHTVESGARHRLEMAKSTKNDIYERLQGCWQRCLEPTKLELHRLEKMLDDCSDVLPTAEESARRARDVARSAENIYALVRHSASHA+QAHESAREEVLFPPLLCDDYGALLRAQHRTREAL KAIQSVKNARGQVEGARAAVKNAVEI+GVEPFRRAFLADKVAEAKRRHKEVNTNYEALEVERKRAVNKEKKAAATYKEAAIRDGAA+IAFQAAQRQTARTRATFSLLTCGRGGSKRGEAE FL REGGE
Sbjct:    1 MRRGLARKRWEEGHDTELEEDGVEEGVKTLWKRENEKEGVVLGGKPTVGGCEVDGSSSRPSPLSSSSSLDGTQGGRPCWPQSPWLSSVGSRKKKGGEEAAAGAGNRFEVIAEESINAAMRDQEVKRRVMDEAHTVESGARHRLEMAKSTKNDIYERLQGCWQRCLEPTKLELHRLEKMLDDCSDVLPTAEESARRARDVARSAENIYALVRHSASHAKQAHESAREEVLFPPLLCDDYGALLRAQHRTREALAKAIQSVKNARGQVEGARAAVKNAVEIVGVEPFRRAFLADKVAEAKRRHKEVNTNYEALEVERKRAVNKEKKAAATYKEAAIRDGAAMIAFQAAQRQTARTRATFSLLTCGRGGSKRGEAERFLVREGGE 382
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BLAST of mRNA_E-siliculosus-1a_F_contig1249.1545.1 vs. uniprot
Match: A0A6H5KIW7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIW7_9PHAE)

HSP 1 Score: 449 bits (1154), Expect = 6.610e-156
Identity = 241/260 (92.69%), Postives = 252/260 (96.92%), Query Frame = 1 
Query:  358 RDQEVKRRATDEAHTVESGARHRLEMAKSTKNDIYERLQGCWQRCLEPTKLELHRLEKMLDDCSDVLPTAEESARRARDVARSAENIYALVRHSASHARQAHESAREEVLFPPLLCDDYGALLRAQHRTREALVKAIQSVKNARGQVEGARAAVKNAVEIIGVEPFRRAFLADKVAEAKRRHKEVNTNYEALEVERKRAVNKEKKAAATYKEAAIRDGAAIIAFQAAQRQTARTRATFSLLTCGRGGSKRGEAESFLARE 1137
            RDQEVKRR+ D+AHTVES ARHRLEMAK+TKNDI+ERLQGC QRCLEPTK+ELHRLEKMLDDCSDVLPTAEESARRARDVARSAE+IY LVRHSASHARQAHESAREEVLFPPLLCDDYGALLRAQHRTREALVK+I+SVKNARGQVEGARAAVKNAVE IGVEPF+RAFLADKV EAKRR+KEV+TNYEALEVERKRAVNKEKKAAATYKEAAIRDGAAIIAFQAAQRQTART ATFSLLTCGRGGSKRGEAE FLARE
Sbjct:    2 RDQEVKRRSMDDAHTVESDARHRLEMAKNTKNDIHERLQGCRQRCLEPTKMELHRLEKMLDDCSDVLPTAEESARRARDVARSAESIYTLVRHSASHARQAHESAREEVLFPPLLCDDYGALLRAQHRTREALVKSIESVKNARGQVEGARAAVKNAVESIGVEPFKRAFLADKVVEAKRRYKEVSTNYEALEVERKRAVNKEKKAAATYKEAAIRDGAAIIAFQAAQRQTARTLATFSLLTCGRGGSKRGEAERFLARE 261
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1249.1545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHL2_ECTSI3.120e-24093.72Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KIW7_9PHAE6.610e-15692.69Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1249contigE-siliculosus-1a_F_contig1249:8190..10643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size1176
Model size1176
Exons4
Ec32 orthologEc-26_003550.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1249.1545.1prot_E-siliculosus-1a_F_contig1249.1545.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1249 8190..10643 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927770.909155-CDS-E-siliculosus-1a_F_contig1249:8189..84081622927770.909155-CDS-E-siliculosus-1a_F_contig1249:8189..8408Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1249 8190..8408 +
1696318673.4351957-CDS-E-siliculosus-1a_F_contig1249:8189..84081696318673.4351957-CDS-E-siliculosus-1a_F_contig1249:8189..8408Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1249 8190..8408 +
1622927770.945476-CDS-E-siliculosus-1a_F_contig1249:8748..89541622927770.945476-CDS-E-siliculosus-1a_F_contig1249:8748..8954Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1249 8749..8954 +
1696318673.4465842-CDS-E-siliculosus-1a_F_contig1249:8748..89541696318673.4465842-CDS-E-siliculosus-1a_F_contig1249:8748..8954Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1249 8749..8954 +
1622927770.9673016-CDS-E-siliculosus-1a_F_contig1249:9333..97491622927770.9673016-CDS-E-siliculosus-1a_F_contig1249:9333..9749Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1249 9334..9749 +
1696318673.4551945-CDS-E-siliculosus-1a_F_contig1249:9333..97491696318673.4551945-CDS-E-siliculosus-1a_F_contig1249:9333..9749Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1249 9334..9749 +
1622927770.9868288-CDS-E-siliculosus-1a_F_contig1249:10308..106431622927770.9868288-CDS-E-siliculosus-1a_F_contig1249:10308..10643Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1249 10309..10643 +
1696318673.4644601-CDS-E-siliculosus-1a_F_contig1249:10308..106431696318673.4644601-CDS-E-siliculosus-1a_F_contig1249:10308..10643Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1249 10309..10643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1249.1545.1

>prot_E-siliculosus-1a_F_contig1249.1545.1 ID=prot_E-siliculosus-1a_F_contig1249.1545.1|Name=mRNA_E-siliculosus-1a_F_contig1249.1545.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=392bp
MRRGPADKRLAQGHDTELEEDGVEDGVKTLWKRENEKEGVGLGGKPTVGG
CEVGGSSSRPSPSSSSSSLDGTQGGRPCWPQSPWLSSARSRKKNSGKEAG
AGAGNRFEVIAEESINAATRDQEVKRRATDEAHTVESGARHRLEMAKSTK
NDIYERLQGCWQRCLEPTKLELHRLEKMLDDCSDVLPTAEESARRARDVA
RSAENIYALVRHSASHARQAHESAREEVLFPPLLCDDYGALLRAQHRTRE
ALVKAIQSVKNARGQVEGARAAVKNAVEIIGVEPFRRAFLADKVAEAKRR
HKEVNTNYEALEVERKRAVNKEKKAAATYKEAAIRDGAAIIAFQAAQRQT
ARTRATFSLLTCGRGGSKRGEAESFLAREGGEEEGEEEDEEE
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mRNA from alignment at E-siliculosus-1a_F_contig1249:8190..10643+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1249.1545.1 ID=mRNA_E-siliculosus-1a_F_contig1249.1545.1|Name=mRNA_E-siliculosus-1a_F_contig1249.1545.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2454bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1249:8190..10643+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGGAGAGGCCCTGCGGACAAGCGGTTGGCACAAGGGCACGACACTGA
ACTTGAAGAGGACGGCGTTGAGGATGGGGTGAAGACCCTTTGGAAGCGGG
AAAACGAGAAAGAAGGAGTTGGTTTGGGTGGAAAGCCGACGGTGGGTGGC
TGCGAGGTTGGTGGAAGCTCGTCGCGACCGTCTCCGTCCTCCTCCTCGTC
GTCTCTTGATGGAACACAGGTTTGCAGTGCTTCCGATAAGAGCAGCCTAC
CTACAGTATGTGCACGATAGTACCAGCGTATTGAAAAACAGTTTTGGCAG
TGTAAAGTAGGTCACATCTACGATTGACCTCTCACCTACACATTCTTTAT
GTAGGCGAGGCGCGAGCATGTGAAACAAGGCGATGACCTCGTCGACGGCC
AAAGGGCAAACGTTGGGAACAACACTACACAGCAGATGCGGCGCTTTCCT
TCTCAGCTGATATGCTCGATTGATTGCCTCAGAGGCACAAAACAGTGATA
TCATACCCGCTCTCGTTTTCCCTCTCGTGAATTACGCATTCTGCGCGTGA
AAACGCCAGGGCGGCCGTCCATGCTGGCCGCAGAGCCCATGGTTATCTTC
AGCCAGGAGCAGAAAAAAGAACAGCGGCAAGGAAGCCGGCGCCGGTGCCG
GGAACCGCTTCGAAGTCATTGCAGAGGAGTCTATCAACGCCGCGACGCGG
GACCAAGAGGTGAAGCGCCGGGCCACTGACGAGGCGCACACCGTGGAGTC
CGGCGCTCGGCACAGGTTAGTCCGGGGGTGGCGCGACACCATGGAAACTT
TGCACGACGCTCGTCGTTGGGTGTTTTTCCTCGGGAGAACCGACCCATTG
GTTTCATTGATGTTGCCGTCACAAACCTGCCAAACATTATTGCAGGCTAT
ACCTATCCACTAGCATGCCAAACTATGGATCAAGGCCTGCGAAAATCTCG
TCATGTAACTCTTGTCAATTCTAGAGGGGTGTATCAGCAGGGGCTACTAC
AGGCGGCGGTACCGATTTGTGACGCACGTTGTCGGGATCACGCACGTTGT
CGGGATCTCCTGAAACATGCGTCATTTTGAAGCCGAAAGCTACGAGAAAC
GAAGCAGAAACAACAATACACACATTGTCAACACCACCAAACAGGCTAGA
GATGGCGAAGAGCACCAAGAACGACATATACGAACGGCTGCAAGGCTGCT
GGCAGCGGTGCCTCGAACCCACGAAGCTGGAGCTACACCGGCTGGAGAAA
ATGTTGGACGACTGCTCCGACGTCTTGCCCACCGCCGAGGAGAGCGCCAG
GAGGGCGAGAGACGTGGCCCGCAGCGCCGAGAACATCTACGCCCTGGTGC
GCCACAGCGCGTCCCACGCGAGGCAGGCGCACGAGTCCGCCCGAGAGGAA
GTCCTCTTCCCCCCGCTACTCTGCGACGACTACGGAGCGCTCTTGAGGGC
GCAGCACCGCACCCGGGAGGCGCTCGTGAAGGCCATCCAGTCCGTGAAGA
ACGCCCGGGGGCAGGTGGAGGGGGCGAGGGCGGCGGTCAAGAACGCGGTG
GAGATTATCGGTGGGTCTTTTCGTCCTCATGAGTCGTGTCCTCGAGTTGC
CACTACGGTTTCGGGGTTTCACGATAGCATTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCAGTTGGTGCTGTGATTGAGGATGATGATGGCGTAGCCGTG
GGTTGTGCAGCGCCAGGCGTGAGAATATGGCTTTCCGGAAGCGCATCGAG
CTTTCTGGAAGTAGTAAACTACGTACAGGACAGACGTGTGATAATATATC
GTTTGTTGTTCATCACGTTTCCCCGCCATTCCGGCAACGATATCGTGAGA
GACATGTGCGCGCGTCAACCGTACCGCATCATGAGGCCCCGCGTAAACCA
CTTGGAAAGAAAGGCACAGATTTCCGACGTACTGCACGAAACACTCTCGC
TTGCTGTCGTTGCCTTCACCATTCTGATAAGAAGAAACAACGGACGTCGC
TAGGTCATTTTCTCTTCTGTCTGTCTGTCTGTCTGTCTGTCTGTTTGTGT
TGCACAACCCCTGGAACTTTGAGCAAACCACCGAAAACTAAACATAACAC
GGAAAACAATGCCCCGCAGGCGTTGAGCCGTTTAGACGGGCCTTCTTGGC
CGACAAAGTCGCCGAGGCCAAGCGCCGGCACAAGGAGGTCAATACCAACT
ACGAGGCCCTCGAGGTTGAGCGCAAGCGGGCCGTAAACAAGGAAAAGAAG
GCGGCGGCAACGTACAAGGAGGCCGCGATTCGGGATGGTGCAGCCATCAT
CGCGTTTCAAGCCGCTCAGCGCCAAACGGCAAGAACCCGCGCTACTTTCA
GCCTGCTGACTTGCGGGCGCGGTGGGAGCAAGCGCGGCGAAGCGGAAAGT
TTCCTGGCGCGGGAGGGGGGGGAGGAGGAGGGCGAGGAGGAGGACGAGGA
GGAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1249:8190..10643+

>mRNA_E-siliculosus-1a_F_contig1249.1545.1 ID=mRNA_E-siliculosus-1a_F_contig1249.1545.1|Name=mRNA_E-siliculosus-1a_F_contig1249.1545.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2352bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1249:8190..10643+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGGAGAGGCCCTGCGGACAAGCGGTTGGCACAAGGGCACGACACTGA
ACTTGAAGAGGACGGCGTTGAGGATGGGGTGAAGACCCTTTGGAAGCGGG
AAAACGAGAAAGAAGGAGTTGGTTTGGGTGGAAAGCCGACGGTGGGTGGC
TGCGAGGTTGGTGGAAGCTCGTCGCGACCGTCTCCGTCCTCCTCCTCGTC
GTCTCTTGATGGAACACAGATGAGGAGAGGCCCTGCGGACAAGCGGTTGG
CACAAGGGCACGACACTGAACTTGAAGAGGACGGCGTTGAGGATGGGGTG
AAGACCCTTTGGAAGCGGGAAAACGAGAAAGAAGGAGTTGGTTTGGGTGG
AAAGCCGACGGTGGGTGGCTGCGAGGTTGGTGGAAGCTCGTCGCGACCGT
CTCCGTCCTCCTCCTCGTCGTCTCTTGATGGAACACAGGGCGGCCGTCCA
TGCTGGCCGCAGAGCCCATGGTTATCTTCAGCCAGGAGCAGAAAAAAGAA
CAGCGGCAAGGAAGCCGGCGCCGGTGCCGGGAACCGCTTCGAAGTCATTG
CAGAGGAGTCTATCAACGCCGCGACGCGGGACCAAGAGGTGAAGCGCCGG
GCCACTGACGAGGCGCACACCGTGGAGTCCGGCGCTCGGCACAGGGCGGC
CGTCCATGCTGGCCGCAGAGCCCATGGTTATCTTCAGCCAGGAGCAGAAA
AAAGAACAGCGGCAAGGAAGCCGGCGCCGGTGCCGGGAACCGCTTCGAAG
TCATTGCAGAGGAGTCTATCAACGCCGCGACGCGGGACCAAGAGGTGAAG
CGCCGGGCCACTGACGAGGCGCACACCGTGGAGTCCGGCGCTCGGCACAG
GCTAGAGATGGCGAAGAGCACCAAGAACGACATATACGAACGGCTGCAAG
GCTGCTGGCAGCGGTGCCTCGAACCCACGAAGCTGGAGCTACACCGGCTG
GAGAAAATGTTGGACGACTGCTCCGACGTCTTGCCCACCGCCGAGGAGAG
CGCCAGGAGGGCGAGAGACGTGGCCCGCAGCGCCGAGAACATCTACGCCC
TGGTGCGCCACAGCGCGTCCCACGCGAGGCAGGCGCACGAGTCCGCCCGA
GAGGAAGTCCTCTTCCCCCCGCTACTCTGCGACGACTACGGAGCGCTCTT
GAGGGCGCAGCACCGCACCCGGGAGGCGCTCGTGAAGGCCATCCAGTCCG
TGAAGAACGCCCGGGGGCAGGTGGAGGGGGCGAGGGCGGCGGTCAAGAAC
GCGGTGGAGATTATCGGCTAGAGATGGCGAAGAGCACCAAGAACGACATA
TACGAACGGCTGCAAGGCTGCTGGCAGCGGTGCCTCGAACCCACGAAGCT
GGAGCTACACCGGCTGGAGAAAATGTTGGACGACTGCTCCGACGTCTTGC
CCACCGCCGAGGAGAGCGCCAGGAGGGCGAGAGACGTGGCCCGCAGCGCC
GAGAACATCTACGCCCTGGTGCGCCACAGCGCGTCCCACGCGAGGCAGGC
GCACGAGTCCGCCCGAGAGGAAGTCCTCTTCCCCCCGCTACTCTGCGACG
ACTACGGAGCGCTCTTGAGGGCGCAGCACCGCACCCGGGAGGCGCTCGTG
AAGGCCATCCAGTCCGTGAAGAACGCCCGGGGGCAGGTGGAGGGGGCGAG
GGCGGCGGTCAAGAACGCGGTGGAGATTATCGGCGTTGAGCCGTTTAGAC
GGGCCTTCTTGGCCGACAAAGTCGCCGAGGCCAAGCGCCGGCACAAGGAG
GTCAATACCAACTACGAGGCCCTCGAGGTTGAGCGCAAGCGGGCCGTAAA
CAAGGAAAAGAAGGCGGCGGCAACGTACAAGGAGGCCGCGATTCGGGATG
GTGCAGCCATCATCGCGTTTCAAGCCGCTCAGCGCCAAACGGCAAGAACC
CGCGCTACTTTCAGCCTGCTGACTTGCGGGCGCGGTGGGAGCAAGCGCGG
CGAAGCGGAAAGTTTCCTGGCGCGGGAGGGGGGGGAGGAGGAGGGCGAGG
AGGAGGACGAGGAGGAGGCGTTGAGCCGTTTAGACGGGCCTTCTTGGCCG
ACAAAGTCGCCGAGGCCAAGCGCCGGCACAAGGAGGTCAATACCAACTAC
GAGGCCCTCGAGGTTGAGCGCAAGCGGGCCGTAAACAAGGAAAAGAAGGC
GGCGGCAACGTACAAGGAGGCCGCGATTCGGGATGGTGCAGCCATCATCG
CGTTTCAAGCCGCTCAGCGCCAAACGGCAAGAACCCGCGCTACTTTCAGC
CTGCTGACTTGCGGGCGCGGTGGGAGCAAGCGCGGCGAAGCGGAAAGTTT
CCTGGCGCGGGAGGGGGGGGAGGAGGAGGGCGAGGAGGAGGACGAGGAGG
AG
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