mRNA_E-siliculosus-1a_F_contig1243.1519.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1243.1519.1 vs. uniprot
Match: D8LHE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE0_ECTSI) HSP 1 Score: 918 bits (2372), Expect = 0.000e+0 Identity = 468/587 (79.73%), Postives = 489/587 (83.30%), Query Frame = 1
Query: 1 MGKPSQDLVSVNRKTEICRNWQQGRCVAEAWKCAFAHGTHELRRQSLDEMEYTGRIPNASKFRCYPCLTWITTGACPYFSRCVFIHDPRIRGPTAAYLYKHNGNRSHSSRSGGTVGSPLGRDIFYWPDMPRTDADDNKVCYWIMGSSAWMNVAQPMILGVSSLPTISVNYDMDPSMLHSEDATERAVYQLWYSLVSTITEIREQQNTLVGMGRASEAPYNPNDLLFNAPPSRGVRHVWRDPCQVCKAADRPEISXXXXXXXXXXXXXRPLRARTVGGDSSSVQHAPPSFPLADIDPRSALSLEARTPARAMRKEQPAWRLNTATGVENQRPKQSTGPGGIPGSPCPRRSTAPPALGRSRDTTTSSAGFNTARGLTTEFGTRTSLNTQTDNQFRHTSDTRMKEGQRNASWEDVVRSALFDXXXXXXXXXXXXXXTQPSFSSTTSDSRAPVFLPWYDGTSPYGDXXXXXXXXXXXXSGGPVDSGCGGYLSPPSTGTSPRNPSLDFGTADDCWSASSRQTSFSPFGAPGHPGAGTDASSYGYDPRNLSCHSDGGXXXXXXXISXXXXGVSHVSQTRRTTTYPFGSFAEGM 1761
MGKPS DLVSVNRKTEICRNWQQGRCVAEAWKCAFAHGTHELRRQSLD+MEYTGRIPNASKFRCYPCLTWITTGACPYFSRCVFIHDPRIRGPTAAYLYKHNGNRSHS+RSGG+VGSPLGRDIFYWPDMPRTDAD N+ IM SAWM+VAQ MI+GVSSLPT+S NYDMDPSMLHSEDATERAVYQLWY+LVSTITEIREQQN LVGMG EA Y+ N NAPPSRGVRH+W D CQVC++ADRPEIS R L ART GG SSSVQHAPPSFPLADIDPRSALSLEARTPARAMRKEQP+WRLNTATG ENQRPKQSTGPGG+PGSPCPRRSTAPPALGRSRDTTTSSAGFNTARGLT EFGTRTSLNTQ +NQ RH SDTRMK GQRNASWEDVVRSALF+ TQ SFSST S+SRAP FLPWYDGTSPY D SGG V+S G YLSPPSTGTSPRNPSLDFGTADDCWSASS+QTSFSP GAPGHPGA T ASSY YDPRNLSC S+G + GVSH SQTRRTTTYPFGSFAEGM
Sbjct: 1 MGKPSLDLVSVNRKTEICRNWQQGRCVAEAWKCAFAHGTHELRRQSLDQMEYTGRIPNASKFRCYPCLTWITTGACPYFSRCVFIHDPRIRGPTAAYLYKHNGNRSHSTRSGGSVGSPLGRDIFYWPDMPRTDADGNE----IMDPSAWMDVAQLMIVGVSSLPTVSANYDMDPSMLHSEDATERAVYQLWYTLVSTITEIREQQNPLVGMGSVPEASYDRNGSFCNAPPSRGVRHIWSDLCQVCESADRPEISPEIVQVTVPATVPRALGARTGGGGSSSVQHAPPSFPLADIDPRSALSLEARTPARAMRKEQPSWRLNTATGAENQRPKQSTGPGGVPGSPCPRRSTAPPALGRSRDTTTSSAGFNTARGLTAEFGTRTSLNTQGNNQLRHASDTRMKGGQRNASWEDVVRSALFEDDDDTKEAASKPP-TQRSFSSTISESRAPGFLPWYDGTSPYDDTEVQSSEPPSYPSGGGVESTRGDYLSPPSTGTSPRNPSLDFGTADDCWSASSQQTSFSPCGAPGHPGASTGASSYLYDPRNLSCQSNGAGCGGGISSAG---GVSHASQTRRTTTYPFGSFAEGM 579
BLAST of mRNA_E-siliculosus-1a_F_contig1243.1519.1 vs. uniprot
Match: A0A6H5KEG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEG2_9PHAE) HSP 1 Score: 343 bits (879), Expect = 4.470e-112 Identity = 181/233 (77.68%), Postives = 194/233 (83.26%), Query Frame = 1
Query: 238 SRCVFIHDPRIRGPTAAYLYKHNGNRSHSSRSGGTVGSPLGRDIFYWPDMPRTDADDNKVCYWIMGSSAWMNVAQPMILGVSSLPTISVNYDMDPSMLHSEDATERAVYQLWYSLVSTITEIREQQNTLVGMGRASEAPYNPNDLLFNAPPSRGVRHVWRDPCQVCKAADRPEISXXXXXXXXXXXXXRPLRARTVGGDSSSVQHAPPSFPLADIDPRSALSLEARTPARAMR 936
+RCVFIHDPRIRGPTAAYLY H+G RSHS+RSGG+VGSPLGRDIFYWPDMPRTDAD N+ LPT+ VNYDMDPSMLHSEDATERAVYQLWYSLVSTITEI EQ +TLVGMGRASEAPY+P+DLLFNAPPSRG RH+WRDPCQVC++ADR EIS XXXXXXXXXRPLRART GG S+SVQHAP SFPLADIDPRSALSLEARTPARAMR
Sbjct: 19 ARCVFIHDPRIRGPTAAYLYNHHGKRSHSARSGGSVGSPLGRDIFYWPDMPRTDADGNE------------------------LPTVLVNYDMDPSMLHSEDATERAVYQLWYSLVSTITEISEQPHTLVGMGRASEAPYDPSDLLFNAPPSRGRRHIWRDPCQVCESADRLEISPEIVXXXXXXXXXRPLRARTGGGGSTSVQHAPSSFPLADIDPRSALSLEARTPARAMR 227
BLAST of mRNA_E-siliculosus-1a_F_contig1243.1519.1 vs. uniprot
Match: A0A6H5KCL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCL9_9PHAE) HSP 1 Score: 238 bits (607), Expect = 9.850e-72 Identity = 134/197 (68.02%), Postives = 138/197 (70.05%), Query Frame = 1
Query: 1171 QFRHTSDTRMKEGQRNASWEDVVRSALFDXXXXXXXXXXXXXXTQPSFSSTTSDSRAPVFLPWYDGTSPYGDXXXXXXXXXXXXSGGPVDSGCGGYLSPPSTGTSPRNPSLDFGTADDCWSASSRQTSFSPFGAPGHPGAGTDASSYGYDPRNLSCHSDGGXXXXXXXISXXXXGVSHVSQTRRTTTYPFGSFAEGM 1761
Q RH SDTRMKEGQRNASWED VRSALF+ TQPSFSST S+S AP FLPWYDGTSPYGD SG V+ G YLS P TGTSPRNPSLDFG ADD WSASS+QTSFSP GAPGHPGA T ASSY YDPRNLSC S GG IS GVSHVSQTRRTTTYPFGSFAEGM
Sbjct: 13 QLRHASDTRMKEGQRNASWEDTVRSALFEDDDGTIETSSKPP-TQPSFSSTISESHAPGFLPWYDGTSPYGDTEVQSSEPPLYSSGRGVEPARGDYLSAPFTGTSPRNPSLDFGAADDRWSASSQQTSFSPCGAPGHPGASTGASSYVYDPRNLSCQSQGGGGGRG--ISGTG-GVSHVSQTRRTTTYPFGSFAEGM 205
BLAST of mRNA_E-siliculosus-1a_F_contig1243.1519.1 vs. uniprot
Match: D7FIR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIR3_ECTSI) HSP 1 Score: 117 bits (294), Expect = 3.350e-24 Identity = 74/215 (34.42%), Postives = 107/215 (49.77%), Query Frame = 1
Query: 4 GKPSQDLVSVNRKTEICRNWQQGRCVAEAWKCAFAHGTHELRRQSLDEMEYTGRIPNASKFRCYPCLTWITTGACPYFSRCVFIHDPRIRG-----PTAAYLYKHNGNR---SHSSRSGGTV-GS----PLGRD-----IFYWPDMPRTDADDNKVCYWIMGSSAWMNVAQPMILGVSSLPTISVNYDMDPSMLHSEDATERAVYQLWYSLVSTI 594
G PS ++ NRKTE+CRN++ G C +CAFAHG +++ ++L ++E GRI +ASK++ C TW+ TG C Y RCVFIHD R++G P + L K +R S SR GG+ GS P G D + ++PD PR D D + LP V YD+D + + Y+LWYS ++ +
Sbjct: 27 GIPSSSIIEHNRKTELCRNYENGSCTFGD-RCAFAHGLDDIKHKTLRDLEKEGRIADASKYQACLCQTWVATGTCLYGRRCVFIHDDRVKGTIGLSPRTSTLAKSAASRISSSTGSRGGGSGRGSSPLCPAGEDNDNGSLLFFPDRPR-DPDSRE------------------------LPADEVRYDIDFGVDVNTGRDHSTAYKLWYSFITVM 215
BLAST of mRNA_E-siliculosus-1a_F_contig1243.1519.1 vs. uniprot
Match: A0A836CEW5_9STRA (C3H1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEW5_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 7.840e-21 Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 1
Query: 22 LVSVNRKTEICRNWQQGRCVAEAWKCAFAHGTHELRRQSLDEMEYTGRIPNASKFRCYPCL--TWITTGACPY 234
++ NRKTE+CRNWQ G C+ KCAFAHG EL Q+L EME GRIPNA++FR PC+ TW+ TG+CPY
Sbjct: 4 VIEANRKTELCRNWQNGTCLYGG-KCAFAHGQSELTVQTLTEMEKAGRIPNAARFRSNPCMASTWVATGSCPY 75
BLAST of mRNA_E-siliculosus-1a_F_contig1243.1519.1 vs. uniprot
Match: D7FXU2_ECTSI (C3H1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXU2_ECTSI) HSP 1 Score: 95.9 bits (237), Expect = 2.830e-17 Identity = 54/136 (39.71%), Postives = 72/136 (52.94%), Query Frame = 1
Query: 202 LTWITTGACPYFSRCVFIHDPRIRGPTAAYLY--KHNGNRSHSSRSGGTVGSPLGRDIFYWPDMPRTDADDNKVCYWIMGSSAWMNVAQPMILGVSSLPTISVNYDMDPSMLHSEDATERAVYQLWYSLVSTITEI 603
+TW+ TG+CPY SRCVFIHDPR++G A+LY H + HSS S F++PD+PR D D S LP S YD+DP+M ++D +RAVY +WYS VS +T+I
Sbjct: 1 MTWVATGSCPYSSRCVFIHDPRVQGRQEAWLYAGSHMSSAYHSSDS-----------AFFFPDLPR-DPD-------------------------SLLPRDSSLYDLDPAMCAAKDRADRAVYNMWYSFVSVLTDI 99
BLAST of mRNA_E-siliculosus-1a_F_contig1243.1519.1 vs. uniprot
Match: A0A7S2PVK8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PVK8_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 7.980e-16 Identity = 42/84 (50.00%), Postives = 53/84 (63.10%), Query Frame = 1
Query: 40 KTEICRNWQQGRCVAEAW--KCAFAHGTHELR--RQSLDEMEYTGRIPNASKFRCYPCLTWITTGACPYFSRCVFIHDPRIRGP 279
KTE+CR ++ G W KC +AHG HEL+ +L ME +G+I NA + PC+TWI+TGACPY RC IHDP I GP
Sbjct: 11 KTEMCRYYELGGLKNCPWGDKCNYAHGKHELKFNHTTLTLMERSGQIANAKTYLSRPCMTWISTGACPYGRRCPAIHDPSITGP 94
BLAST of mRNA_E-siliculosus-1a_F_contig1243.1519.1 vs. uniprot
Match: A0A835Z3W2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3W2_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 1.510e-12 Identity = 67/219 (30.59%), Postives = 87/219 (39.73%), Query Frame = 1
Query: 121 ELRRQSLDEME---------YTGRIPNASKFRCYPCLTWITTGACPYFSRCVFIHDPRIRGPTAAY----------------------LYKHNGNRSHSSRSG--GT-----VGSPLGRDIFYWPDMPRTDADDNKVCYWIMGSSAWMNVAQPMILGVSSLPTISVNYDMDPSMLHSE---DATERAVYQLWYSLVSTITEIREQQNTLVGMGRASEAP 654
ELR + L ++ GRIPNA+KFR YPCL SRCVF+HDPR+R A+ L G SR G GT +G RD FYWPD+ R + + SSA + LP Y++ +M + D T AVY LWYSLV T+ + + GR + AP
Sbjct: 9 ELRNRDLSQLADWLVRIRRAEAGRIPNATKFRSYPCL-----------SRCVFLHDPRLRSTPASRDVSGTTTPEALSTPASSRASTPLSTGKGGSRCESRGGVLGTGPSSGLGMRAARDFFYWPDVVREPIPEGEPSPSTSTSSAPRR---------AKLPACEATYELSSAMADPDKTGDVTGAAVYHLWYSLVETVLDEKGIPTETAANGRPAVAP 207
BLAST of mRNA_E-siliculosus-1a_F_contig1243.1519.1 vs. uniprot
Match: A0A7S3Q9Y3_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q9Y3_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 1.630e-12 Identity = 36/81 (44.44%), Postives = 51/81 (62.96%), Query Frame = 1
Query: 28 SVNRKTEICRNWQQGRCVAEAWKCAFAHGTHELRRQSLDEMEYTGRIPNASKFRCYPCLTWITTGACPYFSRCVFIHDPRI 270
S KTE+CRN+ R KC +AHG EL+ L ++E G + + FR +PCLTW+ TGACP+ +RC+ +HDPR+
Sbjct: 419 SAKVKTELCRNFNTRRGCQFGDKCNYAHGAQELKLTKLMDLERAGLV-DIEIFRTHPCLTWVATGACPFDTRCIGLHDPRV 498
BLAST of mRNA_E-siliculosus-1a_F_contig1243.1519.1 vs. uniprot
Match: A0A7S3Q3T8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q3T8_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 4.190e-11 Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = 1
Query: 25 VSVNRKTEICRNWQQGRCVAEAWKCAFAHGTHELRRQSLDEMEYTGRIPNASKFRCYPCLTWITTGACPYFSRCVFIHDPRIRGPTAAYLYKH 303
+ KTE+C+ QQGR A +C +AH +EL+ ++ E +I + FR PC +++TGACP+ +RC IHD ++G +AY+ KH
Sbjct: 24 TAAKEKTEMCKTVQQGRYCAFGDRCKYAHNRNELKLTTVRERMNNKQISDGRTFRSRPCFDFLSTGACPFGTRCPNIHDEDMKGGHSAYI-KH 115 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1243.1519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1243.1519.1 >prot_E-siliculosus-1a_F_contig1243.1519.1 ID=prot_E-siliculosus-1a_F_contig1243.1519.1|Name=mRNA_E-siliculosus-1a_F_contig1243.1519.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=588bp MGKPSQDLVSVNRKTEICRNWQQGRCVAEAWKCAFAHGTHELRRQSLDEMback to top mRNA from alignment at E-siliculosus-1a_F_contig1243:17434..26322+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1243.1519.1 ID=mRNA_E-siliculosus-1a_F_contig1243.1519.1|Name=mRNA_E-siliculosus-1a_F_contig1243.1519.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=8889bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1243:17434..26322+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1243:17434..26322+ >mRNA_E-siliculosus-1a_F_contig1243.1519.1 ID=mRNA_E-siliculosus-1a_F_contig1243.1519.1|Name=mRNA_E-siliculosus-1a_F_contig1243.1519.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3528bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1243:17434..26322+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |