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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig124.1503.1 vs. uniprot
Match: D7FZV3_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZV3_ECTSI) HSP 1 Score: 288 bits (736), Expect = 1.290e-89 Identity = 168/206 (81.55%), Postives = 170/206 (82.52%), Query Frame = 1
Query: 1 MSKKAGKKAKVKVPEIDPDSPEWIEEVARKQSQAYDMVQRAMTRSQIEVVLATRDNLVIQRAELETKAKQQSQDQSDIYQYLRKKLKDNYVAIAELETQVSHAHEDRLVREKQLLATIKDLNEERESEKIRLEEKLATLDVELTAIKEYQENSQIYEQTLKDMEAKIAGCKDAFNEEMALLNSQLEEEWETGRRDKEERRKITKKA 618
MSKKAGKKAKVKVPEIDP+SPEWIEEVARKQS+AY MVQRAMTRSQIEVVL TRDNLVIQRAELETKAKQQSQDQSDIYQYLR KLKDNYVAIAELE Q IRL EKL TLDVELTAIKEYQENSQIYEQTLKDMEAKIAGCKDAFNEEMALLNSQLEEEWETGRRDKEERRKITKKA
Sbjct: 1 MSKKAGKKAKVKVPEIDPNSPEWIEEVARKQSEAYGMVQRAMTRSQIEVVLTTRDNLVIQRAELETKAKQQSQDQSDIYQYLRNKLKDNYVAIAELEAQ------------------------------IRLGEKLGTLDVELTAIKEYQENSQIYEQTLKDMEAKIAGCKDAFNEEMALLNSQLEEEWETGRRDKEERRKITKKA 176
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 618 |
| Model size | 619 |
| Exons | 5 |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig124.1503.1 >prot_E-siliculosus-1a_F_contig124.1503.1 ID=prot_E-siliculosus-1a_F_contig124.1503.1|Name=mRNA_E-siliculosus-1a_F_contig124.1503.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=206bp
MSKKAGKKAKVKVPEIDPDSPEWIEEVARKQSQAYDMVQRAMTRSQIEVV
LATRDNLVIQRAELETKAKQQSQDQSDIYQYLRKKLKDNYVAIAELETQV
SHAHEDRLVREKQLLATIKDLNEERESEKIRLEEKLATLDVELTAIKEYQ
ENSQIYEQTLKDMEAKIAGCKDAFNEEMALLNSQLEEEWETGRRDKEERR
KITKKA back to topmRNA from alignment at E-siliculosus-1a_F_contig124:61945..65539+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig124.1503.1 ID=mRNA_E-siliculosus-1a_F_contig124.1503.1|Name=mRNA_E-siliculosus-1a_F_contig124.1503.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3595bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig124:61945..65539+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCGAAGAAGGCAGGAAAAAAAGCGAAGGTCAAGGTGCCAGAGATCGA
CCCAGATTCGCCAGAATGGATCGAGGAGGTTGCTCGGAAGCAAAGCCAAG
CATACGACATGGTGCAGCGAGCCATGACTCGAAGCCAGGTGTGCTTTTGT
AGGGACACGTTTCCCTGTTGTGTGGTAACGTTTGAGCTGTGTACAGGACC
GCAGTAACCGGAAGTCATGACCAGCTCTTTCTATCGCGGACATTCTCAAT
ATATGTATAGAGGTCAGCATGTGCAGGGATGTCCATGGTGGAGCGCGAAC
CTTACGTCTGCCCAAACGTTTTCGCTTCAAGAGCACACGCATGCTATTTG
GCGAAGTAGTCTAATACCTGAGTTTGCACGCACATATAAACTTCCTCGCT
ATCGTGAAATGCGTTCTACCATAGATAAGCTTGGAACCGCCCGAATGGTG
AACGCACCCAATGCATGCCTCTTGAGCATGTCAGTACCACATAATCTTCG
CCTGCAGTTGAGACAATTTTCGCGCAACAGGGCGCCGCGTCGATGCAGGT
CGGATGCTGCTCGATCTCCTTCATACTATCGACAACAGGCTCGATCCCGC
CACACGCACGCGACGCGTTGCAGGCCGATAAAGGCAAGGTACAGCTGTAA
CCAGCACCGAGTGTTTGGCTCTTTGAAACCTGGGCCTTCTTGTACATACA
GATGGTCATATGGTTTCATACCCTTCCACGTTTCTGTTGTTGCAGATCGA
AGTGGTGCTAGCCACCCGAGACAACTTGGTGATCCAAAGGGCGGAACTTG
AAACCAAGGCCAAGCAGCAGTCGCAGGACCAGAGCGACATCTACCAGTAC
CTTCGAAAGAAACTCAAAGACAATTACGTCGCAATCGCCGAGCTCGAAAC
TCAGGTACGAGATGGGGGGCAACAGGTCACGGTAGCAGAGACTCTCGCAA
GTTCCAGCGAGGAACATCCCTACATGCATTTGTACGAAGGGGTGTAGAGA
AAGACAGCCCCACACATTGTGGCATGCTGAGTGTATCGAACCGAAATTGC
ACAGCCCTGATGGAGCCGTGGCCGAGGAAACTCGTTCTGAGCAAGAACGC
AACGTATTGCCTCCCCAGCTTCACAATCCATAGTATGCCTCTCTCTCGGT
TCTAATTCCAGTGCTGTGTAGATCTCCTAGTCCACGGTGTCTAGCGTGCC
ATCCCCTGTACGGGAAGTCTCAGACAAATATTCCGGGACCCAGCAACTTG
GCAGTACAAGCGCCTCTGGAGATTCGTAGGCTTTCGTATTGTAACTAACC
ATTTGCACTGTTTGCGTCTGAACAAATATACTTTCTTTTCCCCACCACCT
CGATTTGGAACCCCTGTAACGCTTGATACTGGTCGCCATATTGCGTCGCA
ATTTGTTTCAGGGGCGGGGCGGGGGGCAGGATGATGAAAACCCCAAAGTA
CCAAAACGTTGGCAACGCCAGAGGCACAAGATAATAGAGCTTGAGGGGGT
TGTCCTCTAACTACATTTTTCCTGTTCTCGAAATATCTTTGGCCAGAAAC
CTCCAACATATGGTGCACAACGAACCAAATTCGAAACCGTGCAAGAAGCA
GGCGGCGCGTACTTGCTGTGTAGCTGGTGTCGTTTGGGGTGGTTTGACAA
CATATTTGTGGTCATAAGGCGATCGTAGCCTGAAGATCCCAAACGATGTC
GACTCAGACGCACCACGAGACACATTCATCGACTACCCTTGATTTAGTAG
CACAAATACTCCCAAACACATGAGAAACGTTTCCATGCCTAACCACCCGC
ACAAATGCGTTCGTTAATACATCAAAGTGAAAGCCTCGCTAACGTTCTTT
GGCGATGCTTCGTTCTAGAAAACAGAACACATCAGTGCCCATGCAGTCTC
TCTGTGGACAGAATTATTTCCTGGCTAATGGAACGTGTGTAGAGAAACAA
AATCCGGGCGGTAAGAGGTTTACAGCGTGCAAACGCGAACCATACTCGAT
GGAAACGTTTGACATTCACAGATGGCATGTGGTTCGTACTTCTTCCAATG
TCCTTCCAAAAAACGACTCGTACAAAGGTGTCGCATGCTCACGAGGACAG
GCTAGTGCGGGAAAAACAGCTTCTTGCTACCATAAAGGACCTGAACGAAG
AGCGCGAGAGCGAAAAGGTATAGTCTTCTGCTAGATTTGTGTTTGTGTAT
CTTTCTGCCCCGCCAACAGGCCAAAGGAAACATTTTCAGTCGCGCCGTGG
ACGGAAGCGAGCGACACAAACTTTTGCGTACCTGTCAAAGATGCGCGCAT
TTCTATGCAAATCAGCACGGTGAGGCGCCTAACGATCTAGCAAGTAGGCA
CCTCGGCTGTGTCAAGCGCTCGGCATCGGGTGATTTCTGCACCAATCTTA
GCAGGCACTGCCCGGTGCGGGCCCACCTTTACCCGAAGCCGGCATCCTTT
GGGATTGACGCTACTGACGCACTGGAAATCATGTTCGTATCCTGTCAAGC
GCATCAGGCACGGAAGCGTTGGCCGCGGCAATGGCAACCCGAAATCTCGC
TTCTTCCCTCCACAACCAGTGTCCGGCCATTTTCGCCATGAGAGCCTCGT
ATTTCCACCGTTCTACATACCCTTCGTCAAAGTTCCCCAGCGGCGACACA
ACCACGTTGAACCCCCATGACCACCTCGTGGACTACCATTCACTAATCCC
TGGCAGATACGGCTGGAGGAGAAACTGGCGACCCTCGACGTCGAGCTTAC
GGCTATCAAAGAATACCAAGAAAACTCACAAATCTACGAGCAGACGGTAC
GAGGCTACCGTGAAGGCGTTGTCGCTCTGGTGGTTATACTTTTGGATCGG
CCGCGCGGCCTGCAATGTAGCACCCTGTGGCTTTGGGTGGCAGCACCTGC
ATTGAATCACCGCTATCGCGGACAGCATTTGCTGAAACAGCCGTAAACGG
GCGTTGTTTTTGGTGTAAATTTGGTAGTTCCCTAGTATTTCTGATGAGTT
CCCCCCGCTTGGTTCCGGACAGCGTATGTTAATCATATCATCAACATGTG
TACATGTTCGAGCTTGCAAGAGGGATACTTTATTCTTTTGTTGCACGCCC
AAACGTCAGCACGGAAACCGAGCGTTTTGCTCTTCCATACTTGCTAGGAG
TATGGGTTGGAACACGTCTGTCGTCTGGTGCAGACATGCTTTTCTCACCA
TGCTCAGTGCGGCAAGCGGGTTCGTACCCCTAGCCATTCCTGTGATTTCC
CAGTCACACAAGGCACCGTGATGGACTGCAACACCTCGTGTAGCGCTTAT
CTTGGTCGTTCTGGTCCGCAAAATTGGCCCAAAACGGCACTAGCAGTACT
CCCTAACTTCGTTTTATGGTGCACGTCTCGCGCGTAGTCAAGTTCGCTGT
TTTTGTTTTCATCGTCAATCATCACTTTTTTCGTGGTGCGGCTCGCTAAC
GCAGTTGAAAGACATGGAGGCCAAAATCGCTGGCTGCAAGGACGCCTTCA
ATGAAGAGATGGCCTTGCTAAACTCCCAGCTGGAGGAGGAGTGGGAGACT
GGCCGCCGAGACAAAGAGGAGCGGCGGAAGATCACGAAAAAGGCG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig124:61945..65539+ >mRNA_E-siliculosus-1a_F_contig124.1503.1 ID=mRNA_E-siliculosus-1a_F_contig124.1503.1|Name=mRNA_E-siliculosus-1a_F_contig124.1503.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1236bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig124:61945..65539+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCGAAGAAGGCAGGAAAAAAAGCGAAGGTCAAGGTGCCAGAGATCGA
CCCAGATTCGCCAGAATGGATCGAGGAGGTTGCTCGGAAGCAAAGCCAAG
CATACGACATGGTGCAGCGAGCCATGACTCGAAGCCAGATGTCGAAGAAG
GCAGGAAAAAAAGCGAAGGTCAAGGTGCCAGAGATCGACCCAGATTCGCC
AGAATGGATCGAGGAGGTTGCTCGGAAGCAAAGCCAAGCATACGACATGG
TGCAGCGAGCCATGACTCGAAGCCAGATCGAAGTGGTGCTAGCCACCCGA
GACAACTTGGTGATCCAAAGGGCGGAACTTGAAACCAAGGCCAAGCAGCA
GTCGCAGGACCAGAGCGACATCTACCAGTACCTTCGAAAGAAACTCAAAG
ACAATTACGTCGCAATCGCCGAGCTCGAAACTCAGATCGAAGTGGTGCTA
GCCACCCGAGACAACTTGGTGATCCAAAGGGCGGAACTTGAAACCAAGGC
CAAGCAGCAGTCGCAGGACCAGAGCGACATCTACCAGTACCTTCGAAAGA
AACTCAAAGACAATTACGTCGCAATCGCCGAGCTCGAAACTCAGGTGTCG
CATGCTCACGAGGACAGGCTAGTGCGGGAAAAACAGCTTCTTGCTACCAT
AAAGGACCTGAACGAAGAGCGCGAGAGCGAAAAGGTGTCGCATGCTCACG
AGGACAGGCTAGTGCGGGAAAAACAGCTTCTTGCTACCATAAAGGACCTG
AACGAAGAGCGCGAGAGCGAAAAGATACGGCTGGAGGAGAAACTGGCGAC
CCTCGACGTCGAGCTTACGGCTATCAAAGAATACCAAGAAAACTCACAAA
TCTACGAGCAGACGATACGGCTGGAGGAGAAACTGGCGACCCTCGACGTC
GAGCTTACGGCTATCAAAGAATACCAAGAAAACTCACAAATCTACGAGCA
GACGTTGAAAGACATGGAGGCCAAAATCGCTGGCTGCAAGGACGCCTTCA
ATGAAGAGATGGCCTTGCTAAACTCCCAGCTGGAGGAGGAGTGGGAGACT
GGCCGCCGAGACAAAGAGGAGCGGCGGAAGATCACGAAAAAGGCGTTGAA
AGACATGGAGGCCAAAATCGCTGGCTGCAAGGACGCCTTCAATGAAGAGA
TGGCCTTGCTAAACTCCCAGCTGGAGGAGGAGTGGGAGACTGGCCGCCGA
GACAAAGAGGAGCGGCGGAAGATCACGAAAAAGGCG back to top
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