mRNA_E-siliculosus-1a_F_contig124.1497.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig124.1497.1 vs. uniprot
Match: D7FZW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW0_ECTSI) HSP 1 Score: 645 bits (1665), Expect = 1.060e-227 Identity = 440/496 (88.71%), Postives = 450/496 (90.73%), Query Frame = 1
Query: 40 GGQQHWGGPLGRIVGQLRRPEGESESNGGGAAAATAPLQPEGRAGGRDGSTARGGVFGPGRGIGRGGMGMTKGGGFAGGGYADRNSRRHSTGDTANGDGGSAKKRGRGGWKKDYEVIASVESKAGEPAAEAAAAGSVENADARYVGYEELPTDMRPQVRDVLAFKTLSLNEETWTPELSPYRTAEVTAFDASSGLVRLLPASIEDDNKDGXXXXXXGLVNGCTKGHTAGQQQQGSSSGIAESNPEEGRVPTSNGHNRGGVSGDSKGTEDPAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEASPEPITDVGSKARSTSSGEVGGAEEDRALREGEEELEYSSLANVRVVRGPSTGELEKRKQALQKWNSLGPGGGILGGSAAGXXXXXXXXXXXXXXXXXXXXXASLPSATPKKAGRGGRXXXXXXXXXXXXGSSRKQGXXXXXASPKSVGKKQGAARGTLAVAGLLGK----LPAGGGGGAAGEATAPSSAV 1515
GGQQHWGGPLGRIVGQLRRPEGESESNGGGAAAA APL+PEGRAGGR STARGGVFGPGRGIGRGGMGMT+GGG AGGGYA++N+RRHSTGDTANGDGGSAKKRGRGGWKKDYEVIASVESKAGE AAEAAAAGSVEN DARYV YEELPTDMRPQV DVLAFKTLSLNEETWTPELSPYRTAEVTAFD SSGLVRLLPASIEDDNKDGXXXXXX LVNGCTKGHTAGQQQQGSSSGI ESN EEGRVPTSNGHN+GGVSG+SKG EDPAAV XXXXXXXXXXXXXXXXXXXXXXXXXXXX +KARSTSSG+VGGAEEDR LREGEEELEYSSLANVRVVRGPS GELEKRKQAL KWNSLGPGGGILGG XXXXXXXXXXXXXXXXXXXX ASLPSATPKKAGRGGRXXXXXXXXXX GS+RKQG ASPKSVGKKQGAARGTLAVAGLLGK LP GGGGGAAGEATAPSSAV
Sbjct: 33 GGQQHWGGPLGRIVGQLRRPEGESESNGGGAAAAIAPLEPEGRAGGRGDSTARGGVFGPGRGIGRGGMGMTRGGGAAGGGYANKNTRRHSTGDTANGDGGSAKKRGRGGWKKDYEVIASVESKAGEAAAEAAAAGSVENGDARYVVYEELPTDMRPQVCDVLAFKTLSLNEETWTPELSPYRTAEVTAFDTSSGLVRLLPASIEDDNKDGXXXXXXXLVNGCTKGHTAGQQQQGSSSGITESNTEEGRVPTSNGHNQGGVSGNSKGMEDPAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKARSTSSGKVGGAEEDRELREGEEELEYSSLANVRVVRGPSMGELEKRKQALHKWNSLGPGGGILGGXXXXXXXXXXXXXXXXXXXXXXXXPASLPSATPKKAGRGGRXXXXXXXXXXACGSARKQGGKGKGASPKSVGKKQGAARGTLAVAGLLGKCAGKLPTGGGGGAAGEATAPSSAV 528
BLAST of mRNA_E-siliculosus-1a_F_contig124.1497.1 vs. uniprot
Match: A0A6H5L4H0_9PHAE (Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H0_9PHAE) HSP 1 Score: 591 bits (1523), Expect = 9.830e-200 Identity = 418/496 (84.27%), Postives = 425/496 (85.69%), Query Frame = 1
Query: 40 GGQQHWGGPLGRIVGQLRRPEGESESNGGGAAAATAPLQPEGRAGGRDGSTARGGVFGPGRGIGRGGMGMTKGGGFAGGGYADRNSRRHSTGDTANGDGGSAKKRGRGGWKKDYEVIASVESKAGEPAAEAAAAGSVENADARYVGYEELPTDMRPQVRDVLAFKTLSLNEETWTPELSPYRTAEVTAFDASSGLVRLLPASIEDDNKDGXXXXXXGLVNGCTKGHTAGQQQQGSSSGIAESNPEEGRVPTSNGHNRGGVSGDSKGTEDPAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEASPEPITDVGSKARSTSSGEVGGAEEDRALREGEEELEYSSLANVRVVRGPSTGELEKRKQALQKWNSLGPGGGILGGSAAGXXXXXXXXXXXXXXXXXXXXXASLPSATPKKAGRGGRXXXXXXXXXXXXGSSRKQGXXXXXASPKSVGKKQGAARGTLAVAGLLGK----LPAGGGGGAAGEATAPSSAV 1515
GGQQHWGGPLGRIVGQLRRPEGESESNGGGAAAATAPL+PEGRAG GGVFGPG GMGMT+GGGFAGG YADRN+RRHSTG TANGDGGSAKKRGRGGWKKDYEVIASVESKAGE AAEAAAAGSVENADARYVGYEELPTDMRPQVRDVLAFKTLSLNEETWTPELSPYR AEV AFDASSGLVRL PAS EDDNKDG VN CTKGHT GQQQQGSSS IAESN EEG VPTSNGHN GG GDSKG E PAAV XXXXXXXXXXXXXXXXXXXXXXXXXXXA S EP TD +KARSTSSGEVGGAEEDR LREGEEELEYSSLANVRVVRGPS GEL+KRKQALQKWNSLGPGGGILGGS XXXXXXXXXXXXXXXXXXXXX KKAGRGG+XXXXXXXXXXXXGS+RKQG XXASPKSVGKKQGAARGTLAVAGLLGK LP GGG GAA E TAPSSAV
Sbjct: 494 GGQQHWGGPLGRIVGQLRRPEGESESNGGGAAAATAPLEPEGRAGXXXXXXXVGGVFGPGXXXXXXGMGMTRGGGFAGGRYADRNTRRHSTGHTANGDGGSAKKRGRGGWKKDYEVIASVESKAGEAAAEAAAAGSVENADARYVGYEELPTDMRPQVRDVLAFKTLSLNEETWTPELSPYRMAEVIAFDASSGLVRLRPASTEDDNKDGGGAGSGAFVNDCTKGHTVGQQQQGSSSIIAESNTEEGSVPTSNGHNEGGFGGDSKGMEYPAAVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVSAEPTTDGRNKARSTSSGEVGGAEEDRELREGEEELEYSSLANVRVVRGPSMGELKKRKQALQKWNSLGPGGGILGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-KKAGRGGKXXXXXXXXXXXXGSARKQGGKGXXASPKSVGKKQGAARGTLAVAGLLGKCAGKLPTGGGRGAAEEGTAPSSAV 988
BLAST of mRNA_E-siliculosus-1a_F_contig124.1497.1 vs. uniprot
Match: A0A662WRN2_9STRA (Coilin n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WRN2_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 5.030e-6 Identity = 44/123 (35.77%), Postives = 67/123 (54.47%), Query Frame = 1
Query: 304 HSTGDTANGDGGSAKKRGRGG--WKKDYEVIASVESKAGEPAAEAAAAGSVENADARYVGYEELPTDMRPQVRDVLAFKTLSLNEETWTPELSPYRTAEVTAFDASSGLVRLLPASIEDDNKD 666
H GD A+ +G + K++G+ WK+ Y V+ASV K E + AA+ + A Y P+ R QV+DVLAFKTL+L ETW P LS ++ +V D+S + + ++ N+D
Sbjct: 228 HGNGDMASSNGITPKRKGKWEERWKRPYVVVASVLDKKPEDSDGAASTADLTTMLAAYP--TSSPSPSRFQVKDVLAFKTLTLCLETWQPVLSEWQCGQVQTVDSSGSTIDVSNWTLAASNED 348
BLAST of mRNA_E-siliculosus-1a_F_contig124.1497.1 vs. uniprot
Match: A0A662WP95_9STRA (Coilin n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WP95_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 1.380e-5 Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = 1
Query: 280 YADRNSRRHSTGDTANGDGGSAKKRGRGG--WKKDYEVIASVESKAGEPAAEAAAAGSVENADARYVGYEELPTDMRPQVRDVLAFKTLSLNEETWTPELSPYRTAEVTAFDASSGLV 627
Y + H GD A+ +G + K++G+ WK+ Y V+A+V K E + AA+A + A Y P+ R QV+DVLAFKTL+L ETW P LS ++ +V D+S +
Sbjct: 181 YERSSESTHGNGDMASSNGIAPKRKGKWEERWKRPYVVVATVLDKKLEDSDGAASAADLTTMLAAYP--TSSPSSSRFQVKDVLAFKTLTLCLETWQPVLSDWQCGQVQTVDSSGSTI 296 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig124.1497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig124.1497.1 >prot_E-siliculosus-1a_F_contig124.1497.1 ID=prot_E-siliculosus-1a_F_contig124.1497.1|Name=mRNA_E-siliculosus-1a_F_contig124.1497.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=506bp GGRGRGGGGVGLGGGQQHWGGPLGRIVGQLRRPEGESESNGGGAAAATAPback to top mRNA from alignment at E-siliculosus-1a_F_contig124:8592..11263- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig124.1497.1 ID=mRNA_E-siliculosus-1a_F_contig124.1497.1|Name=mRNA_E-siliculosus-1a_F_contig124.1497.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2672bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig124:8592..11263- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig124:8592..11263- >mRNA_E-siliculosus-1a_F_contig124.1497.1 ID=mRNA_E-siliculosus-1a_F_contig124.1497.1|Name=mRNA_E-siliculosus-1a_F_contig124.1497.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3036bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig124:8592..11263- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |