mRNA_E-siliculosus-1a_F_contig12396.1495.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12396.1495.1
Unique NamemRNA_E-siliculosus-1a_F_contig12396.1495.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12396.1495.1 vs. uniprot
Match: D7FS13_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS13_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.080e-23
Identity = 53/73 (72.60%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    1 VRYLSLYHSRFLRFLTGHAPRVVSIAMSRTEDPFMTGSED--MRL--IMTPQFLAVLEFPPGHGVPYVAYDQQ 207
            VRYLSLY +RFLRF TGH  +VVSIAMS T+D FMTGS D  +RL  +  PQ LAVLEFPPGHG PYVAYDQQ
Sbjct:  110 VRYLSLYDNRFLRFFTGHTDKVVSIAMSPTDDHFMTGSADKTVRLWHLSRPQCLAVLEFPPGHGTPYVAYDQQ 182
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BLAST of mRNA_E-siliculosus-1a_F_contig12396.1495.1 vs. uniprot
Match: A0A090M349_OSTTA (WD40/YVTN repeat-like-containing domain n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M349_OSTTA)

HSP 1 Score: 54.7 bits (130), Expect = 5.060e-7
Identity = 30/73 (41.10%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:    1 VRYLSLYHSRFLRFLTGHAPRVVSIAMSRTEDPFMTGSEDMRL----IMTPQFLAVLEFPPGHGVPYVAYDQQ 207
            VRY SL+ + ++R+  GH+  V SIAMS T D F+T   D+ +    + TP+  A +  P    +PYVAYD Q
Sbjct:   98 VRYHSLHDNTYVRYFKGHSDAVTSIAMSATNDNFLTAGADLTVRLWDLRTPKCCAAI--PQCPAIPYVAYDAQ 168
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BLAST of mRNA_E-siliculosus-1a_F_contig12396.1495.1 vs. uniprot
Match: A0A7S0Z9J6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0Z9J6_9CHLO)

HSP 1 Score: 51.2 bits (121), Expect = 8.320e-6
Identity = 32/73 (43.84%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:    1 VRYLSLYHSRFLRFLTGHAPRVVSIAMSRTEDPFMTGSED--MRL--IMTPQFLAVLEFPPGHGVPYVAYDQQ 207
            VRY SL+ + +LR+  GH   V S+AMS T D F++ S D  +RL  + TP   AV+   P   +P VAYD Q
Sbjct:  105 VRYHSLHDNTYLRYFKGHTDAVTSLAMSATNDNFLSASADRTVRLWDLRTPTCCAVIPDTP--AIPTVAYDAQ 175
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BLAST of mRNA_E-siliculosus-1a_F_contig12396.1495.1 vs. uniprot
Match: W7TLY5_9STRA (Wd repeat-containing protein 82 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLY5_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 4.190e-5
Identity = 21/40 (52.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 VRYLSLYHSRFLRFLTGHAPRVVSIAMSRTEDPFMTGSED 120
            +RYLSLY +++LRF +GH  RV  +AMS T+D F++ S D
Sbjct:  137 IRYLSLYDNQYLRFFSGHEARVTGLAMSYTDDRFLSASMD 176
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12396.1495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FS13_ECTSI1.080e-2372.60Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A090M349_OSTTA5.060e-741.10WD40/YVTN repeat-like-containing domain n=2 Tax=Os... [more]
A0A7S0Z9J6_9CHLO8.320e-643.84Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]
W7TLY5_9STRA4.190e-552.50Wd repeat-containing protein 82 n=2 Tax=Monodopsid... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12396contigE-siliculosus-1a_F_contig12396:575..1531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size207
Model size209
Exons2
Hectar predicted targeting categorymitochondrion
BRITEko00000,ko00001,ko03019,ko03036
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsKOG1446@1,KOG1446@2759
EggNOG free text desc.histone H3-K4 trimethylation
GOsGO:0000785,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006325,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008213,GO:0008287,GO:0009987,GO:0016043,GO:0016569,GO:0016570,GO:0016571,GO:0018022,GO:0018023,GO:0018193,GO:0018205,GO:0019538,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0034708,GO:0034968,GO:0035097,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0048188,GO:0051276,GO:0051568,GO:0070013,GO:0071704,GO:0071840,GO:0072357,GO:0080182,GO:1901564,GO:1902494,GO:1903293,GO:1990234
KEGG Pathwayko03015,map03015
KEGG koko:K08870,ko:K14962
Preferred nameWDR82
Seed eggNOG ortholog2880.D7FS13
Seed ortholog evalue8.4e-20
Seed ortholog score102.4
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927761.0509906-CDS-E-siliculosus-1a_F_contig12396:574..6961622927761.0509906-CDS-E-siliculosus-1a_F_contig12396:574..696Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12396 575..696 +
1696318669.3655422-CDS-E-siliculosus-1a_F_contig12396:574..6961696318669.3655422-CDS-E-siliculosus-1a_F_contig12396:574..696Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12396 575..696 +
1622927761.0685718-CDS-E-siliculosus-1a_F_contig12396:1445..15301622927761.0685718-CDS-E-siliculosus-1a_F_contig12396:1445..1530Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12396 1446..1530 +
1696318669.3752227-CDS-E-siliculosus-1a_F_contig12396:1445..15301696318669.3752227-CDS-E-siliculosus-1a_F_contig12396:1445..1530Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12396 1446..1530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12396.1495.1prot_E-siliculosus-1a_F_contig12396.1495.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12396 575..1530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12396.1495.1

>prot_E-siliculosus-1a_F_contig12396.1495.1 ID=prot_E-siliculosus-1a_F_contig12396.1495.1|Name=mRNA_E-siliculosus-1a_F_contig12396.1495.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=69bp
VRYLSLYHSRFLRFLTGHAPRVVSIAMSRTEDPFMTGSEDMRLIMTPQFL
AVLEFPPGHGVPYVAYDQQ
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mRNA from alignment at E-siliculosus-1a_F_contig12396:575..1531+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12396.1495.1 ID=mRNA_E-siliculosus-1a_F_contig12396.1495.1|Name=mRNA_E-siliculosus-1a_F_contig12396.1495.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=957bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12396:575..1531+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTGCGATACTTGTCGCTGTACCACAGCCGCTTTCTCCGATTCTTGACCGG
GCACGCTCCCAGGGTTGTCTCGATCGCCATGAGTCGCACTGAAGACCCCT
TCATGACCGGCTCCGAGGACATGTGAGAGAGAGAGAAATTGGAGACAGAC
AGAAACCAAAAGACAAATGTCGTGCGGCGATAGATATATTGTCCTATTGA
GCCCAGTCCGCCCGACGGAGGAGGAGAAAGAAAGGGATACTCTACTCTGC
TCTCCCGCAACAAGTTTCTGTCAACGAGCTCTTTTTTGGACCCTCACCTC
TCCTGCTTCGGACGATTGAGGGATTGCGTGAAATACCTTGATCGTGTTTG
AGCCCACAGGCTGGCTACCCGGAATCTCGAGTGCTTGTGCCTCCTTTTTG
TTTGCTTGGCTTCGCAAGATACAGTACTTGGGGAGTGAGGAAGCGAGGAG
CTCGGCGTCGCCTGTATTCTCCACAACACGGTGCTGGTGCATCGCTACCG
GTTTCCAGTGCCTCGCAGTGGGCAGTTGGTGTTACCGCGTTGAGGGGGGA
GGGATGGAGTGTTTCTACTTACCTGTGCGGTTGTGTGCTAGCAGGTTTTT
AGCACGCGTTCGTTCAGAAGACATGCTCCACGGAGAGACGGGGGTGAAGT
CCTACCAATGTCGCGATTACCTCACAGGATCCCCTTCCCCATACATGTGT
ATTCCGCATCGCGATTCACGGAAACCTCCTCGAAATGAACTTTGCGCTCA
ACGTCCTTGCGGCACCCCCCCTCATGTACCCCCGCCGCCCCGCTTTTCCG
TTGTGCGGGGGTCTCTTCTGGGCCGGCACGATCGATTTCTATGGGGCCGA
CTCATCGGCCGACTGCGGTAGGCGCCTAATTATGACACCGCAGTTCCTGG
CGGTGTTGGAGTTCCCCCCGGGCCACGGAGTGCCGTACGTGGCGTACGAC
CAGCAGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12396:575..1531+

>mRNA_E-siliculosus-1a_F_contig12396.1495.1 ID=mRNA_E-siliculosus-1a_F_contig12396.1495.1|Name=mRNA_E-siliculosus-1a_F_contig12396.1495.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=414bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12396:575..1531+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTGCGATACTTGTCGCTGTACCACAGCCGCTTTCTCCGATTCTTGACCGG
GCACGCTCCCAGGGTTGTCTCGATCGCCATGAGTCGCACTGAAGACCCCT
TCATGACCGGCTCCGAGGACATGTGCGATACTTGTCGCTGTACCACAGCC
GCTTTCTCCGATTCTTGACCGGGCACGCTCCCAGGGTTGTCTCGATCGCC
ATGAGTCGCACTGAAGACCCCTTCATGACCGGCTCCGAGGACATGCGCCT
AATTATGACACCGCAGTTCCTGGCGGTGTTGGAGTTCCCCCCGGGCCACG
GAGTGCCGTACGTGGCGTACGACCAGCAGGCGCCTAATTATGACACCGCA
GTTCCTGGCGGTGTTGGAGTTCCCCCCGGGCCACGGAGTGCCGTACGTGG
CGTACGACCAGCAG
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