mRNA_E-siliculosus-1a_F_contig12385.1488.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12385.1488.1
Unique NamemRNA_E-siliculosus-1a_F_contig12385.1488.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12385.1488.1 vs. uniprot
Match: D7FJL7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJL7_ECTSI)

HSP 1 Score: 423 bits (1087), Expect = 6.650e-135
Identity = 242/279 (86.74%), Postives = 246/279 (88.17%), Query Frame = 1 
Query:    1 LQEAFASVVVSWTHAGVRRSGLMTPVGQSQDLLDVLTDTHPVAAASAPAPRLCAPDPIPTPVSGAGRVSAVGDRTHASRPAVMGGHDTPRSRARRASARALDNGWPANGEELAATQAGAASTARQQEEVVHLAGAHMTSAPQLAARAPQSTARDYGRASGTSRPSAKAAPAASATLPSRGDVLAASLARIRGEASGGDHVGTGGIPATTSPARAAATGGCGSSEHALPSAMAEPVPWTAQLSCWRDASSFQDPPTTGSNGNGGATSSGGEFGGARSEGK 837
            L+EAFASVVVSWTHAGVRRSGL+TP  QSQDL  VLTDT+PV AASAPAPRLCAPD IPTPVSG GRVS VGDRTHA RPAVMGGH        RA ARALDNGWPANGEE AATQAG ASTARQQEEV HLAGAHMTSAPQLAARA QSTARDYGRASGTSRPSAKAAPAA ATLPSRG VLAASLAR RGEASGGDHV  GG PATTSPARAA TGG GSSEHA+PSAMAEPVP TAQLSCWR ASSFQDPP TGSNGNGGATSSGGEFGGARSEGK
Sbjct:  476 LEEAFASVVVSWTHAGVRRSGLVTPARQSQDLHAVLTDTYPVGAASAPAPRLCAPDAIPTPVSGEGRVSVVGDRTHALRPAVMGGH--------RAPARALDNGWPANGEEFAATQAGPASTARQQEEVAHLAGAHMTSAPQLAARAAQSTARDYGRASGTSRPSAKAAPAALATLPSRGGVLAASLARNRGEASGGDHVRIGGTPATTSPARAAETGGGGSSEHAVPSAMAEPVPSTAQLSCWRGASSFQDPPITGSNGNGGATSSGGEFGGARSEGK 746
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BLAST of mRNA_E-siliculosus-1a_F_contig12385.1488.1 vs. uniprot
Match: A0A6H5KW95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW95_9PHAE)

HSP 1 Score: 385 bits (988), Expect = 1.120e-122
Identity = 237/344 (68.90%), Postives = 243/344 (70.64%), Query Frame = 1 
Query:   28 VSWTHAGVRRSGLMTPVGQSQDLLDVLTDTHPVAAASAPAPRLCAPDPIPTPVSGAGRVSAVGDRTHASRPAVMGGHDTPRSRARRASARALDNGWPANGEELAATQAGAASTARQQEEVVHLAGAHMTSAPQLAARAPQSTARDYGRASGTSRPSAKAAPAASATLPSRGDVLAASLARIR--------------------------------------------------------------------------GEASGGDHVGTGGIPATTSPARAAATGGCGSSEHALPSAMAEPVPWTAQLSCWRDASSFQDPPTTGSNGNGGATSSGGEFGGARSEGK 837
            +SWT+AGVRRSGLM PV QSQDL  VLTDT+PVAAASAPAPRLCAPDPIPTPVSGAGRVSAVG RTHASRPAVMGGHDTPRSRARRAS RALDN WPANGEE AATQAGAASTARQQEEVVHLAGAHMTSAPQLAARA QSTAR Y  ASGTS P A+AAPAASATLPSR  VLAASL R R                                                                          GEASGGDHV TGG PATTSPA+AA TGG GS EHA+P AMAEPVP TAQLSCWRDASSFQDPP TGSNGNGGAT SGGEFGGARSEGK
Sbjct:    1 MSWTYAGVRRSGLMAPVVQSQDLRAVLTDTYPVAAASAPAPRLCAPDPIPTPVSGAGRVSAVGYRTHASRPAVMGGHDTPRSRARRASTRALDNRWPANGEEFAATQAGAASTARQQEEVVHLAGAHMTSAPQLAARAAQSTARHYPGASGTSSPPARAAPAASATLPSRRGVLAASLVRNRVGTGGSGLQEASRVPMASTAAAAGSPDHASGRRPTRTGKAGGGADPGAGPNATAAXXXXXXXXRSGAAIAPSNKGEASGGDHVETGGTPATTSPAQAAETGGGGSREHAVPPAMAEPVPSTAQLSCWRDASSFQDPPITGSNGNGGATPSGGEFGGARSEGK 344
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12385.1488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJL7_ECTSI6.650e-13586.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW95_9PHAE1.120e-12268.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12385contigE-siliculosus-1a_F_contig12385:1..1590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size837
Model size837
Exons3
Ec32 orthologEc-09_000280.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12385.1488.1prot_E-siliculosus-1a_F_contig12385.1488.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12385 1..1590 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927758.2426064-CDS-E-siliculosus-1a_F_contig12385:0..2641622927758.2426064-CDS-E-siliculosus-1a_F_contig12385:0..264Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12385 1..264 -
1696318668.8199902-CDS-E-siliculosus-1a_F_contig12385:0..2641696318668.8199902-CDS-E-siliculosus-1a_F_contig12385:0..264Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12385 1..264 -
1622927758.2522538-CDS-E-siliculosus-1a_F_contig12385:798..9451622927758.2522538-CDS-E-siliculosus-1a_F_contig12385:798..945Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12385 799..945 -
1696318668.8291504-CDS-E-siliculosus-1a_F_contig12385:798..9451696318668.8291504-CDS-E-siliculosus-1a_F_contig12385:798..945Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12385 799..945 -
1622927758.2610404-CDS-E-siliculosus-1a_F_contig12385:1164..15901622927758.2610404-CDS-E-siliculosus-1a_F_contig12385:1164..1590Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12385 1165..1590 -
1696318668.847644-CDS-E-siliculosus-1a_F_contig12385:1164..15901696318668.847644-CDS-E-siliculosus-1a_F_contig12385:1164..1590Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12385 1165..1590 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12385.1488.1

>prot_E-siliculosus-1a_F_contig12385.1488.1 ID=prot_E-siliculosus-1a_F_contig12385.1488.1|Name=mRNA_E-siliculosus-1a_F_contig12385.1488.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=279bp
LQEAFASVVVSWTHAGVRRSGLMTPVGQSQDLLDVLTDTHPVAAASAPAP
RLCAPDPIPTPVSGAGRVSAVGDRTHASRPAVMGGHDTPRSRARRASARA
LDNGWPANGEELAATQAGAASTARQQEEVVHLAGAHMTSAPQLAARAPQS
TARDYGRASGTSRPSAKAAPAASATLPSRGDVLAASLARIRGEASGGDHV
GTGGIPATTSPARAAATGGCGSSEHALPSAMAEPVPWTAQLSCWRDASSF
QDPPTTGSNGNGGATSSGGEFGGARSEGK
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mRNA from alignment at E-siliculosus-1a_F_contig12385:1..1590-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12385.1488.1 ID=mRNA_E-siliculosus-1a_F_contig12385.1488.1|Name=mRNA_E-siliculosus-1a_F_contig12385.1488.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1590bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12385:1..1590- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTCCAGGAGGCATTTGCGAGTGTGGTCGTGTCCTGGACCCATGCCGGTGT
CCGCCGGTCCGGCTTGATGACCCCAGTCGGACAGAGCCAGGACCTCCTTG
ACGTGTTGACGGACACCCACCCGGTCGCTGCTGCTTCCGCTCCCGCTCCC
CGACTGTGTGCGCCGGATCCTATCCCGACGCCCGTGAGCGGGGCAGGGCG
GGTGTCGGCCGTCGGAGATCGGACCCACGCCTCACGACCAGCAGTGATGG
GGGGACACGACACTCCACGGAGCAGGGCACGCAGGGCTTCCGCCAGGGCT
CTGGATAACGGATGGCCGGCCAACGGGGAAGAACTTGCTGCTACACAGGC
AGGGGCAGCAAGTACAGCAAGGCAGCAGGAGGAGGTCGTGCATTTGGCAG
GGGCACACATGACCTCTGCACCGCAGGTCTGTGTGTGAAGAATATCGTGT
TTTCGGTCAAGTAGGACAGAGTCATCCCGGTGTTTGGCGGGTCAACGTTC
CGAGAGCATGAAACGAGCGCCCGTAGGATTGTTGAGTGGAGTTGGCCGAT
GGTCGGTTGTCCCTTCTCTCCCTCTTCCGTTCTCACCTGTAAGCATACTC
GCGCCACTCTCATCATCGCGATCCTCGTTTCCCGGCGTTTTGCAGTTAGC
CGCACGAGCCCCACAATCCACTGCAAGGGACTACGGACGGGCCTCGGGTA
CGTCTAGGCCGTCGGCGAAGGCCGCCCCTGCGGCTTCGGCCACCCTGCCG
TCCCGCGGGGACGTGTTGGCAGCATCACTCGCAAGAATTCGGGTAGGCAC
CGGAGGAATTGGCGTGGATGAAGCCAGCCGCGTACCGATGGCCTCGACGG
CAGCCGCAGCGGGGTCTTCCGATCGTGCGCGTGGTCGGAGGCCTACGCGT
ACTGGCAAGGCTGGAGGTGGTGTTGGTGCTGGTGCTGGTCCTAATGCTAC
TGCCGCCGCCGCTGCTGCTGCTGCTGCTTCTGCTGCTGCTGCTGCTGCCG
CTGCAGCTGCTGCCGCTGCTGATGATGTTGCCCCTTCTGCTGCTGGGAAG
CGGGCGGCCATCGCGCCAAGCAACAAGGTGGGCGGAATCGTGCTTGCCGT
CGAGGCGCGTAGTATCTCTGTGCCCCTTGTGTGGTGAATTATCGAAGTGT
CGTCCTCGATCAATCTCCCGGGTGGACGGTCCTCTTGGATGCCTCGATTC
TTTTGCGGACCTAGCCCCCCGTGCCTAAGCCCTGTTTTGGTTTTGTTTTG
CCTTTCGTATTCGGATGGTTATTATCCTAGCCGTCGTTTTTTTGGCCAAA
CCTCTTCCACTCCCTCTGTCTTGCAGGGTGAAGCTTCTGGTGGAGATCAT
GTCGGGACTGGGGGGATACCTGCAACAACGTCGCCTGCACGAGCAGCTGC
GACGGGAGGGTGCGGGTCGAGCGAGCATGCTCTGCCGTCGGCAATGGCCG
AGCCAGTGCCTTGGACGGCACAATTGAGCTGCTGGCGAGACGCTAGTAGC
TTCCAGGACCCGCCGACTACGGGAAGCAACGGGAACGGCGGGGCGACGTC
CAGCGGGGGTGAATTTGGTGGCGCACGGAGCGAAGGGAAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12385:1..1590-

>mRNA_E-siliculosus-1a_F_contig12385.1488.1 ID=mRNA_E-siliculosus-1a_F_contig12385.1488.1|Name=mRNA_E-siliculosus-1a_F_contig12385.1488.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1674bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12385:1..1590- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTCCAGGAGGCATTTGCGAGTGTGGTCGTGTCCTGGACCCATGCCGGTGT
CCGCCGGTCCGGCTTGATGACCCCAGTCGGACAGAGCCAGGACCTCCTTG
ACGTGTTGACGGACACCCACCCGGTCGCTGCTGCTTCCGCTCCCGCTCCC
CGACTGTGTGCGCCGGATCCTATCCCGACGCCCGTGAGCGGGGCAGGGCG
GGTGTCGGCCGTCGGAGATCGGACCCACGCCTCACGACCAGCAGTGATGG
GGGGACACGACACTCCACGGAGCAGGGCACGCAGGGCTTCCGCCAGGGCT
CTGGATAACGGATGGCCGGCCAACGGGGAAGAACTTGCTGCTACACAGGC
AGGGGCAGCAAGTACAGCAAGGCAGCAGGAGGAGGTCGTGCATTTGGCAG
GGGCACACATGACCTCTGCACCGCAGCTCCAGGAGGCATTTGCGAGTGTG
GTCGTGTCCTGGACCCATGCCGGTGTCCGCCGGTCCGGCTTGATGACCCC
AGTCGGACAGAGCCAGGACCTCCTTGACGTGTTGACGGACACCCACCCGG
TCGCTGCTGCTTCCGCTCCCGCTCCCCGACTGTGTGCGCCGGATCCTATC
CCGACGCCCGTGAGCGGGGCAGGGCGGGTGTCGGCCGTCGGAGATCGGAC
CCACGCCTCACGACCAGCAGTGATGGGGGGACACGACACTCCACGGAGCA
GGGCACGCAGGGCTTCCGCCAGGGCTCTGGATAACGGATGGCCGGCCAAC
GGGGAAGAACTTGCTGCTACACAGGCAGGGGCAGCAAGTACAGCAAGGCA
GCAGGAGGAGGTCGTGCATTTGGCAGGGGCACACATGACCTCTGCACCGC
AGTTAGCCGCACGAGCCCCACAATCCACTGCAAGGGACTACGGACGGGCC
TCGGGTACGTCTAGGCCGTCGGCGAAGGCCGCCCCTGCGGCTTCGGCCAC
CCTGCCGTCCCGCGGGGACGTGTTGGCAGCATCACTCGCAAGAATTCGGT
TAGCCGCACGAGCCCCACAATCCACTGCAAGGGACTACGGACGGGCCTCG
GGTACGTCTAGGCCGTCGGCGAAGGCCGCCCCTGCGGCTTCGGCCACCCT
GCCGTCCCGCGGGGACGTGTTGGCAGCATCACTCGCAAGAATTCGGGGTG
AAGCTTCTGGTGGAGATCATGTCGGGACTGGGGGGATACCTGCAACAACG
TCGCCTGCACGAGCAGCTGCGACGGGAGGGTGCGGGTCGAGCGAGCATGC
TCTGCCGTCGGCAATGGCCGAGCCAGTGCCTTGGACGGCACAATTGAGCT
GCTGGCGAGACGCTAGTAGCTTCCAGGACCCGCCGACTACGGGAAGCAAC
GGGAACGGCGGGGCGACGTCCAGCGGGGGTGAATTTGGTGGCGCACGGAG
CGAAGGGAAGGGTGAAGCTTCTGGTGGAGATCATGTCGGGACTGGGGGGA
TACCTGCAACAACGTCGCCTGCACGAGCAGCTGCGACGGGAGGGTGCGGG
TCGAGCGAGCATGCTCTGCCGTCGGCAATGGCCGAGCCAGTGCCTTGGAC
GGCACAATTGAGCTGCTGGCGAGACGCTAGTAGCTTCCAGGACCCGCCGA
CTACGGGAAGCAACGGGAACGGCGGGGCGACGTCCAGCGGGGGTGAATTT
GGTGGCGCACGGAGCGAAGGGAAG
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