mRNA_E-siliculosus-1a_F_contig1238.1486.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1238.1486.1 vs. uniprot
Match: D8LIJ3_ECTSI (DUF4149 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIJ3_ECTSI) HSP 1 Score: 380 bits (976), Expect = 1.970e-129 Identity = 203/207 (98.07%), Postives = 206/207 (99.52%), Query Frame = 3
Query: 75 MGVLDLMLPWITRAAVLVSVVLLTLTTLRRHSDIPLSQATLRVAHLCSFSVWFGTSVWVSFIAGIVLMRAVTMETFGLAQAKLFDAYFKFSLLCLAVAGFTGAALSSSSSAQSDGDGGSTVGATPFLVAVACVVANLVFFSPQTTITMMERNRVCKELGVDRKSPDPQVRKLSKRFGMFHGIANLINLVALACGAVHLCALAERLSL 695
MGVLDLMLPWITRAA+LVSVVLLTLTTLRRHSDIPLSQATLRVAHLCSFSVWFGTSVWVSFIAGIVLMRAVTMETFGLAQAKLFDAYFKFSLLCLAVAGFTGAALSSSSSA+SDGD GSTVGATPFLVAVACVVANLVFFSPQTTITMMER+RVCKELGVDRKSPDPQVRKLSKRFGMFHGIANLINLVALACGAVHLCALAERLSL
Sbjct: 1 MGVLDLMLPWITRAAILVSVVLLTLTTLRRHSDIPLSQATLRVAHLCSFSVWFGTSVWVSFIAGIVLMRAVTMETFGLAQAKLFDAYFKFSLLCLAVAGFTGAALSSSSSARSDGDDGSTVGATPFLVAVACVVANLVFFSPQTTITMMERSRVCKELGVDRKSPDPQVRKLSKRFGMFHGIANLINLVALACGAVHLCALAERLSL 207
BLAST of mRNA_E-siliculosus-1a_F_contig1238.1486.1 vs. uniprot
Match: A0A1E7FD76_9STRA (DUF4149 domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FD76_9STRA) HSP 1 Score: 120 bits (302), Expect = 2.590e-28 Identity = 76/179 (42.46%), Postives = 102/179 (56.98%), Query Frame = 3
Query: 195 LRVAHLCSFSVWFGTSVWVSFIAGIVLMRAVTMETFGLAQAKLFDAYFKFSLLCLAVA-GFTGAALSSSSSAQSDGDGGSTVGATPFLVAVACVVANLVFFSPQTTITMMERNRVCKELGVD-----------RKSPDPQVRKLSKRFGMFHGIANLINLVALACGAVHLCALAERLSL 695
L + HL +FS WFG SVWVSF AGIV+ + + TFG Q+KLF AYF FS + +A G +G LSS+S+ +V +AC++ NL +F P TT M +R+ V K LG +K+ DPQ++ LSK FGM HG++ L+NL AL G V L AER+ L
Sbjct: 47 LMLIHLLAFSSWFGCSVWVSFPAGIVMFKTLPRHTFGRLQSKLFPAYFLFSAGAIIIAIGTSGDLLSSTSNXXXXXXXXXXXIPYSLIVILACILINLFYFEPATTRVMYQRHAVEKRLGTGHEIGQLRPTDPKKANDPQLKALSKTFGMLHGVSTLLNLAALGFGCVWLSKCAERMVL 225
BLAST of mRNA_E-siliculosus-1a_F_contig1238.1486.1 vs. uniprot
Match: A0A7S4ATM5_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ATM5_9STRA) HSP 1 Score: 113 bits (283), Expect = 1.070e-25 Identity = 72/173 (41.62%), Postives = 98/173 (56.65%), Query Frame = 3
Query: 207 HLCSFSVWFGTSVWVSFIAGIVLMRAVTMETFGLAQAKLFDAYFKFSLLCLAVAGFTGAALSSSSSAQSDGDGGSTVGATPFLVAV-ACVVANLVFFSPQTTITMMERNRVCKELGVD-----------RKSPDPQVRKLSKRFGMFHGIANLINLVALACGAVHLCALAERL 689
HL +FS WFG SVWVSFIAGIV+ + + FG Q+KLF AYF FS + VA T +AL+ S S ST L+A+ AC + NL++F P TT M +R+ V K LG +K+ DPQ++ LSK FGM HG++ L+NL +L G A+++
Sbjct: 50 HLLAFSSWFGCSVWVSFIAGIVMFKTLPRHVFGRLQSKLFPAYFVFSAGAIVVAIATSSALTKSREEAS-----STNNIPYSLIAILACTLLNLLYFEPATTKVMFQRHAVEKRLGTGHEIGKIRPDDPKKANDPQLKALSKTFGMLHGVSTLLNLGSLGFGCAWFSKCADQM 217
BLAST of mRNA_E-siliculosus-1a_F_contig1238.1486.1 vs. uniprot
Match: A0A7S4MCN5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MCN5_9STRA) HSP 1 Score: 112 bits (279), Expect = 3.170e-25 Identity = 77/195 (39.49%), Postives = 109/195 (55.90%), Query Frame = 3
Query: 117 AVLVSVVLLTLTTLRRHSDIPLSQATLRVAHLCSFSVWFGTSVWVSFIAGIVLMRAVTMETFGLAQAKLFDAYFKFSLLCLAVAGFTGAALSSSSSAQSDGDGGSTVGATPFLVAVACVVANLVFFSPQTTITMMERNRVCKELGVDR-----------KSPDPQVRKLSKRFGMFHGIANLINLVALACGAVHL 668
AVL + L T T+L S++ + L + HL +FS WFG SVWVSF++G+V+ R + FG Q++LF AYF++S + +AVA T AL ++ LV +A V+ NL+F P+TT M +R+ V K LG K+ DP++R LSK+FGM HGI++L NL AL G V L
Sbjct: 23 AVLAACALGTRTSL--ESEVGHHRHYLVLVHLLAFSSWFGCSVWVSFVSGLVMFRNLPRHVFGRLQSRLFPAYFQYSAVTVAVAILTAGALGWRTNV--------------LLVVMATVLLNLLFLEPETTRIMYKRHAVEKRLGTGHEVGQLKPDDPVKANDPELRALSKKFGMLHGISSLTNLAALGFGCVWL 201
BLAST of mRNA_E-siliculosus-1a_F_contig1238.1486.1 vs. uniprot
Match: A0A7R9VXI6_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VXI6_9STRA) HSP 1 Score: 110 bits (276), Expect = 9.320e-25 Identity = 73/177 (41.24%), Postives = 102/177 (57.63%), Query Frame = 3
Query: 195 LRVAHLCSFSVWFGTSVWVSFIAGIVLMRAVTMETFGLAQAKLFDAYFKFSLLCLAVAGFTGAALSSSSSAQSDGDGGSTVGATPFLVAV-ACVVANLVFFSPQTTITMMERNRVCKELGVDR-----------KSPDPQVRKLSKRFGMFHGIANLINLVALACGAVHLCALAERL 689
L + HL +FS WFG SVWVSF+AG+V+ R + FG Q++LF YF+FS L +AVA F+ A+ G + G LVAV V+ NL+F P+TT M +R+ V K LG K+ DP++R LSK+FGM HG+++L+NL AL G V L A+++
Sbjct: 51 LLLVHLLAFSSWFGCSVWVSFVAGLVMFRNLPRHVFGRLQSRLFPVYFRFSALNVAVAIFSAGAV-----------GWNAYG----LVAVMGTVLLNLLFLEPETTRIMFKRHTVEKRLGTGHEVGQLKPDDLEKANDPELRALSKKFGMLHGMSSLMNLAALGFGCVWLNFCAKQM 212
BLAST of mRNA_E-siliculosus-1a_F_contig1238.1486.1 vs. uniprot
Match: A0A7S1BIS9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BIS9_9STRA) HSP 1 Score: 100 bits (248), Expect = 9.180e-21 Identity = 70/197 (35.53%), Postives = 105/197 (53.30%), Query Frame = 3
Query: 135 VLLTLTTLRRHSDIPLSQATLRVAHLCSFSVWFGTSVWVSFIAGIVLMRAVTMETFGLAQAKLFDAYFKFSLLCLAVAGFTGAALSSSSSAQSDGDGGSTVGATPFLVAVACVVANLVFFSPQTTITMMERNRVCKELGVDR-----------KSPDPQVRKLSKRFGMFHGIANLINLVALACGAVHLCALAERLS 692
+L+ T+L SD P S+ L + HL + + WFG SVWVS +AG+V RA+ FG A+LF YF FS + +++A +A + G G L VA ANL++ P+TT M R+ V + LG K+ DP++R L+K+FGM HGI+ L+NL+A+ G V LA++++
Sbjct: 38 ILILATSLAPPSD-PRSRKALLLLHLLACASWFGCSVWVSCVAGLVTFRALPRHVFGRLMARLFPVYFNFSAVTVSLA-----------AAAARGLGWPIAWLAAILGTVA---ANLLYLEPETTRVMFLRHVVERRLGTGHEVGQLKPSDPAKANDPELRALTKKFGMLHGISTLLNLMAMGFGCVWFSILAQKIT 219
BLAST of mRNA_E-siliculosus-1a_F_contig1238.1486.1 vs. uniprot
Match: A0A0G4GGW2_9ALVE (DUF4149 domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GGW2_9ALVE) HSP 1 Score: 97.8 bits (242), Expect = 1.650e-19 Identity = 65/181 (35.91%), Postives = 93/181 (51.38%), Query Frame = 3
Query: 207 HLCSFSVWFGTSVWVSFIAGIVLMRAVTMETFGLAQAKLFDAYFKFSLLCLAV--------AGFTGAALSSSSSAQSDGDGGSTVGATPFLVAV-ACVVANLVFFSPQTTITMMERNRVCKELGVDR-----------KSPDPQVRKLSKRFGMFHGIANLINLVALACGAVHLCALAERL 689
HL F+ WFG SVWVSF+AG+V+ ++ FG QAKLF YF+FS+LC++V A F G++ Q + L+AV ++ NL++F P TT M R+ V + LG K+ DP++ LS RFG HG + +NL+ L G H+C + RL
Sbjct: 99 HLFFFASWFGCSVWVSFVAGLVMFYSLPRHVFGQLQAKLFPRYFQFSVLCISVCLALEVCAAKFRGSSKCMPREQQMN------------LIAVWGILLLNLLYFEPVTTKVMFLRHAVERRLGTGHEVGQLRPWDPVKAKDPELVSLSARFGKLHGCSTSLNLLGLGLGCWHICWIGARL 267
BLAST of mRNA_E-siliculosus-1a_F_contig1238.1486.1 vs. uniprot
Match: A0A0G4ETH3_VITBC (DUF4149 domain-containing protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ETH3_VITBC) HSP 1 Score: 95.1 bits (235), Expect = 4.260e-19 Identity = 56/156 (35.90%), Postives = 90/156 (57.69%), Query Frame = 3
Query: 216 SFSVWFGTSVWVSFIAGIVLMRAVTMETFGLAQAKLFDAYFKFSLLCLAVAGFTGAALSSSSSAQSDGDGGSTVGATPFLVAVACVVANLVFFSPQTTITMMERNRVCKELG-----------VDRKSPDPQVRKLSKRFGMFHGIANLINLVALA 650
S+ + FG+ VWVS ++GI++ R V TFG Q+KLF AYF+ S +C ++ A L S+ G +++A + NLV+ PQTT TM ER+ + +ELG V++ + ++++L+K+FGM+HGI++L NL+ LA
Sbjct: 42 SWGILFGSQVWVSLVSGIIMFRTVPRHTFGKLQSKLFPAYFQLSTICSSLLTIATAVLMPSNRLLHTCAG----------LSLASSLVNLVYLEPQTTATMYERHAIERELGIGVSMKDDPASVEKAKANTELQRLNKKFGMYHGISSLSNLIGLA 187
BLAST of mRNA_E-siliculosus-1a_F_contig1238.1486.1 vs. uniprot
Match: A0A8J1W0M4_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J1W0M4_9DINO) HSP 1 Score: 92.4 bits (228), Expect = 1.090e-17 Identity = 63/183 (34.43%), Postives = 97/183 (53.01%), Query Frame = 3
Query: 207 HLCSFSVWFGTSVWVSFIAGIVLMRAVTMETFGLAQAKLFDAYFKFSLLCLAVAGFT----GAALSSSSSAQSDGDGGSTVGATP------FLVAVACVVANLVFFSPQTTITMMERNRVCKELGVDR-----------KSPDPQVRKLSKRFGMFHGIANLINLVALACGAVHLCALAERLS 692
H+ F+ WFG S+WVSF+AG+V+ + FG QAKLF YF+FS++ ++ A G+ L ++ A+ TV A P + ++ NL++F P+TT M ER++V +LG K+ DP++ LSKRFG HGI+ +NL+AL G H + ++S
Sbjct: 80 HVFCFASWFGCSMWVSFVAGLVMFNNLPRHVFGRLQAKLFPRYFQFSVIFVSCALLPHLVPGSVLERTALAK-------TV-ALPQNQQFNLAAIIGILLLNLLYFEPRTTAVMFERHKVEVKLGTGHEIGQLKPSDPAKANDPELVALSKRFGKLHGISTSLNLIALCLGVWHAVWIGSQVS 254
BLAST of mRNA_E-siliculosus-1a_F_contig1238.1486.1 vs. uniprot
Match: A0A8J1YZS9_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J1YZS9_9DINO) HSP 1 Score: 89.4 bits (220), Expect = 1.610e-16 Identity = 61/180 (33.89%), Postives = 91/180 (50.56%), Query Frame = 3
Query: 207 HLCSFSVWFGTSVWVSFIAGIVLMRAVTMETFGLAQAKLFDAYFKFS--------LLCLAVAGFTGAALSSSSSAQSDGDGGSTVGATPFLVAVACVVANLVFFSPQTTITMMERNRVCKELGVDR-----------KSPDPQVRKLSKRFGMFHGIANLINLVALACGAVHLCALAERL 689
H+ F+ WFG S+WVSF+AG+V+ + FG QA LF YF++S LL A+ AA +S+S+ G+ +G +A V+ NL+ F P+TT M R++V LG K+ DP++ LSK+FG HG++ +NL+ L G H L R+
Sbjct: 92 HVFCFATWFGCSMWVSFVAGLVMFHNLPRHVFGRLQAALFPRYFQYSAIFVAACVLLDQAMPYVMPAARTSTSNQLGTTQLGNLIGI------LAIVLLNLLVFEPKTTAVMFARHKVEVRLGTGHEIGQLRPSDPEKANDPELVALSKKFGALHGVSTTLNLIGLCLGTWHCVWLGSRI 265 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1238.1486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1238.1486.1 >prot_E-siliculosus-1a_F_contig1238.1486.1 ID=prot_E-siliculosus-1a_F_contig1238.1486.1|Name=mRNA_E-siliculosus-1a_F_contig1238.1486.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=208bp MGVLDLMLPWITRAAVLVSVVLLTLTTLRRHSDIPLSQATLRVAHLCSFSback to top mRNA from alignment at E-siliculosus-1a_F_contig1238:26591..29076+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1238.1486.1 ID=mRNA_E-siliculosus-1a_F_contig1238.1486.1|Name=mRNA_E-siliculosus-1a_F_contig1238.1486.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2486bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1238:26591..29076+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1238:26591..29076+ >mRNA_E-siliculosus-1a_F_contig1238.1486.1 ID=mRNA_E-siliculosus-1a_F_contig1238.1486.1|Name=mRNA_E-siliculosus-1a_F_contig1238.1486.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1248bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1238:26591..29076+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |