mRNA_E-siliculosus-1a_F_contig1237.1481.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1237.1481.1
Unique NamemRNA_E-siliculosus-1a_F_contig1237.1481.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1237.1481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1237contigE-siliculosus-1a_F_contig1237:34321..35063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size579
Model size743
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927756.6394675-UTR-E-siliculosus-1a_F_contig1237:34320..344841622927756.6394675-UTR-E-siliculosus-1a_F_contig1237:34320..34484Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1237 34321..34484 +
1696318668.0770683-UTR-E-siliculosus-1a_F_contig1237:34320..344841696318668.0770683-UTR-E-siliculosus-1a_F_contig1237:34320..34484Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1237 34321..34484 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927756.679641-CDS-E-siliculosus-1a_F_contig1237:34484..350631622927756.679641-CDS-E-siliculosus-1a_F_contig1237:34484..35063Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1237 34485..35063 +
1696318668.0873694-CDS-E-siliculosus-1a_F_contig1237:34484..350631696318668.0873694-CDS-E-siliculosus-1a_F_contig1237:34484..35063Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1237 34485..35063 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1237.1481.1prot_E-siliculosus-1a_F_contig1237.1481.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1237 34485..35063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1237.1481.1

>prot_E-siliculosus-1a_F_contig1237.1481.1 ID=prot_E-siliculosus-1a_F_contig1237.1481.1|Name=mRNA_E-siliculosus-1a_F_contig1237.1481.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=193bp
MINTCARHSRGHPTGTMAAPAHACRRIVKYQHVFNFRVLVRQVGGDFVAP
VGCRIHVCCIFICSRCCFVFLASFLRSRQKIVVIRLHCCSLPDAGGTRCS
REGLAVLPRHGVNKTRKLVFLEVCPTSTAAAVVGGSDRIGWMDIVTGLIW
SVACVFFYLHMKGRSLERREAAAGGEGQKKERKKKTLIIEQVC
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mRNA from alignment at E-siliculosus-1a_F_contig1237:34321..35063+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1237.1481.1 ID=mRNA_E-siliculosus-1a_F_contig1237.1481.1|Name=mRNA_E-siliculosus-1a_F_contig1237.1481.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=743bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1237:34321..35063+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGACGGTTTATACTACTAACTGTTTTAATAGGGTGTTCGTGTTTCGCGAT
AGGAAGTAGGCTTTAGGGGGAAAGGGTGTGTGAAGGCGAGAGATTCGCTT
CGGAACCGGTTTAAGATTCTAACAACGTTTTTCTACTCCTCCGGAAGATT
GACGCTGTCTTGCCATGATTAACACCTGCGCAAGACACAGCAGGGGACAC
CCCACCGGTACAATGGCGGCGCCGGCGCATGCATGCAGAAGGATTGTAAA
ATATCAACACGTGTTCAATTTTCGGGTACTGGTGCGGCAAGTAGGGGGGG
ATTTCGTGGCCCCTGTCGGGTGTCGGATTCATGTGTGTTGTATTTTTATA
TGTAGCCGGTGTTGTTTTGTTTTCCTGGCGAGCTTCCTACGCTCCAGGCA
AAAGATCGTTGTAATACGACTGCACTGCTGCTCCCTTCCCGACGCTGGCG
GCACCCGCTGTAGTCGCGAGGGTCTCGCCGTTTTGCCGAGGCACGGCGTG
AACAAAACAAGAAAATTGGTTTTTTTGGAGGTTTGTCCTACTAGTACTGC
TGCAGCAGTAGTAGGCGGATCGGATCGGATCGGATGGATGGATATTGTTA
CTGGATTGATTTGGTCGGTTGCGTGTGTTTTTTTTTATTTGCATATGAAG
GGACGGTCACTAGAACGACGAGAGGCGGCAGCAGGCGGGGAAGGACAGAA
GAAGGAACGAAAGAAGAAAACATTGATTATTGAACAAGTCTGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1237:34321..35063+

>mRNA_E-siliculosus-1a_F_contig1237.1481.1 ID=mRNA_E-siliculosus-1a_F_contig1237.1481.1|Name=mRNA_E-siliculosus-1a_F_contig1237.1481.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1158bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1237:34321..35063+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATTAACACCTGCGCAAGACACAGCAGGGGACACCCCACCGGTACAAT
GGCGGCGCCGGCGCATGCATGCAGAAGGATTGTAAAATATCAACACGTGT
TCAATTTTCGGGTACTGGTGCGGCAAGTAGGGGGGGATTTCGTGGCCCCT
GTCGGGTGTCGGATTCATGTGTGTTGTATTTTTATATGTAGCCGGTGTTG
TTTTGTTTTCCTGGCGAGCTTCCTACGCTCCAGGCAAAAGATCGTTGTAA
TACGACTGCACTGCTGCTCCCTTCCCGACGCTGGCGGCACCCGCTGTAGT
CGCGAGGGTCTCGCCGTTTTGCCGAGGCACGGCGTGAACAAAACAAGAAA
ATTGGTTTTTTTGGAGGTTTGTCCTACTAGTACTGCTGCAGCAGTAGTAG
GCGGATCGGATCGGATCGGATGGATGGATATTGTTACTGGATTGATTTGG
TCGGTTGCGTGTGTTTTTTTTTATTTGCATATGAAGGGACGGTCACTAGA
ACGACGAGAGGCGGCAGCAGGCGGGGAAGGACAGAAGAAGGAACGAAAGA
AGAAAACATTGATTATTGAACAAGTCTGCATGATTAACACCTGCGCAAGA
CACAGCAGGGGACACCCCACCGGTACAATGGCGGCGCCGGCGCATGCATG
CAGAAGGATTGTAAAATATCAACACGTGTTCAATTTTCGGGTACTGGTGC
GGCAAGTAGGGGGGGATTTCGTGGCCCCTGTCGGGTGTCGGATTCATGTG
TGTTGTATTTTTATATGTAGCCGGTGTTGTTTTGTTTTCCTGGCGAGCTT
CCTACGCTCCAGGCAAAAGATCGTTGTAATACGACTGCACTGCTGCTCCC
TTCCCGACGCTGGCGGCACCCGCTGTAGTCGCGAGGGTCTCGCCGTTTTG
CCGAGGCACGGCGTGAACAAAACAAGAAAATTGGTTTTTTTGGAGGTTTG
TCCTACTAGTACTGCTGCAGCAGTAGTAGGCGGATCGGATCGGATCGGAT
GGATGGATATTGTTACTGGATTGATTTGGTCGGTTGCGTGTGTTTTTTTT
TATTTGCATATGAAGGGACGGTCACTAGAACGACGAGAGGCGGCAGCAGG
CGGGGAAGGACAGAAGAAGGAACGAAAGAAGAAAACATTGATTATTGAAC
AAGTCTGC
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