mRNA_E-siliculosus-1a_F_contig1237.1476.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1237.1476.1
Unique NamemRNA_E-siliculosus-1a_F_contig1237.1476.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1237.1476.1 vs. uniprot
Match: D8LL38_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL38_ECTSI)

HSP 1 Score: 213 bits (541), Expect = 6.170e-60
Identity = 127/145 (87.59%), Postives = 128/145 (88.28%), Query Frame = 2 
Query:  194 RTDGGNLVEIVAEFQGRLRRQVQAALADGXXXXXXX----TCSADVGDDDGRIRRGSTSAAVARSSSFSQVTTVGLVDDGDAPPRARLRRQAPADSRGASLITHRRLKDGPFSGRAXXXXXXXXXXGGRGGGDVLDELEKRIGSV 616
            RTDGGNLVEIVAEFQGRLRRQVQAALADG XXXXXX    TCSADVGDDDGRIRRGSTSAAVA+SSSFSQVTTVGLVDDGDAPPRARLRRQAPADSRGASLITHRRL DGPFSGRA          GGRGGGDVL ELEKRIGSV
Sbjct: 1061 RTDGGNLVEIVAEFQGRLRRQVQAALADGDXXXXXXXXXXTCSADVGDDDGRIRRGSTSAAVAQSSSFSQVTTVGLVDDGDAPPRARLRRQAPADSRGASLITHRRLNDGPFSGRAA---------GGRGGGDVLGELEKRIGSV 1196
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1237.1476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LL38_ECTSI6.170e-6087.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1237contigE-siliculosus-1a_F_contig1237:3327..3985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size468
Model size659
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1237.1476.1prot_E-siliculosus-1a_F_contig1237.1476.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1237 3478..3945 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927756.7768774-UTR-E-siliculosus-1a_F_contig1237:3326..34771622927756.7768774-UTR-E-siliculosus-1a_F_contig1237:3326..3477Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1237 3327..3477 +
1696318668.137322-UTR-E-siliculosus-1a_F_contig1237:3326..34771696318668.137322-UTR-E-siliculosus-1a_F_contig1237:3326..3477Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1237 3327..3477 +
1622927756.806098-UTR-E-siliculosus-1a_F_contig1237:3945..39851622927756.806098-UTR-E-siliculosus-1a_F_contig1237:3945..3985Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1237 3946..3985 +
1696318668.156491-UTR-E-siliculosus-1a_F_contig1237:3945..39851696318668.156491-UTR-E-siliculosus-1a_F_contig1237:3945..3985Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1237 3946..3985 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927756.7892332-CDS-E-siliculosus-1a_F_contig1237:3477..39451622927756.7892332-CDS-E-siliculosus-1a_F_contig1237:3477..3945Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1237 3478..3945 +
1696318668.1473773-CDS-E-siliculosus-1a_F_contig1237:3477..39451696318668.1473773-CDS-E-siliculosus-1a_F_contig1237:3477..3945Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1237 3478..3945 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1237.1476.1

>prot_E-siliculosus-1a_F_contig1237.1476.1 ID=prot_E-siliculosus-1a_F_contig1237.1476.1|Name=mRNA_E-siliculosus-1a_F_contig1237.1476.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=156bp
MRASEDGAGGGGGGRTDGGNLVEIVAEFQGRLRRQVQAALADGGGGGGGG
TCSADVGDDDGRIRRGSTSAAVARSSSFSQVTTVGLVDDGDAPPRARLRR
QAPADSRGASLITHRRLKDGPFSGRAKDGPFSGRAAGGRGGGDVLDELEK
RIGSV*
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mRNA from alignment at E-siliculosus-1a_F_contig1237:3327..3985+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1237.1476.1 ID=mRNA_E-siliculosus-1a_F_contig1237.1476.1|Name=mRNA_E-siliculosus-1a_F_contig1237.1476.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=659bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1237:3327..3985+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTTGCTGCTGCCGGTGGAGACATCATCTTCGAGGGGCGCCGCCGCCGTGT
TGTCCCGGGAGGGATGCGTGCGCGGGGAGGGGGGTGGTAACCACGACGCG
AGAGAGAACCCGCCGGCACCGATAGCGGGACGGCCGGCACGACGCACGGC
GATGCGTGCAAGCGAGGACGGAGCAGGTGGTGGTGGTGGTGGCCGTACTG
ACGGCGGAAATCTGGTGGAGATCGTCGCCGAGTTCCAGGGCCGCCTGAGG
CGGCAGGTCCAAGCGGCGCTCGCGGACGGCGGCGGCGGCGGCGGCGGCGG
CACTTGTTCTGCTGATGTCGGTGACGACGACGGCAGAATAAGAAGGGGGT
CGACCTCCGCTGCCGTGGCGCGGTCCTCTTCCTTTTCGCAAGTGACGACG
GTCGGGCTCGTGGACGATGGTGATGCTCCTCCTCGCGCTCGATTGCGGCG
GCAAGCCCCGGCGGACAGCCGGGGGGCGAGTTTGATCACCCATCGGCGGC
TGAAAGACGGGCCGTTTTCTGGCCGCGCGAAAGACGGGCCGTTTTCTGGC
CGCGCGGCCGGGGGCAGGGGTGGCGGTGACGTTCTCGACGAGCTTGAGAA
GCGCATCGGTAGCGTTTGACTGTAAAGTTTGTTGTCGGCGTTAAAAATTA
AGGATTATC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1237:3327..3985+

>mRNA_E-siliculosus-1a_F_contig1237.1476.1 ID=mRNA_E-siliculosus-1a_F_contig1237.1476.1|Name=mRNA_E-siliculosus-1a_F_contig1237.1476.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=936bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1237:3327..3985+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGTGCAAGCGAGGACGGAGCAGGTGGTGGTGGTGGTGGCCGTACTGA
CGGCGGAAATCTGGTGGAGATCGTCGCCGAGTTCCAGGGCCGCCTGAGGC
GGCAGGTCCAAGCGGCGCTCGCGGACGGCGGCGGCGGCGGCGGCGGCGGC
ACTTGTTCTGCTGATGTCGGTGACGACGACGGCAGAATAAGAAGGGGGTC
GACCTCCGCTGCCGTGGCGCGGTCCTCTTCCTTTTCGCAAGTGACGACGG
TCGGGCTCGTGGACGATGGTGATGCTCCTCCTCGCGCTCGATTGCGGCGG
CAAGCCCCGGCGGACAGCCGGGGGGCGAGTTTGATCACCCATCGGCGGCT
GAAAGACGGGCCGTTTTCTGGCCGCGCGAAAGACGGGCCGTTTTCTGGCC
GCGCGGCCGGGGGCAGGGGTGGCGGTGACGTTCTCGACGAGCTTGAGAAG
CGCATCGGTAGCGTTTGAATGCGTGCAAGCGAGGACGGAGCAGGTGGTGG
TGGTGGTGGCCGTACTGACGGCGGAAATCTGGTGGAGATCGTCGCCGAGT
TCCAGGGCCGCCTGAGGCGGCAGGTCCAAGCGGCGCTCGCGGACGGCGGC
GGCGGCGGCGGCGGCGGCACTTGTTCTGCTGATGTCGGTGACGACGACGG
CAGAATAAGAAGGGGGTCGACCTCCGCTGCCGTGGCGCGGTCCTCTTCCT
TTTCGCAAGTGACGACGGTCGGGCTCGTGGACGATGGTGATGCTCCTCCT
CGCGCTCGATTGCGGCGGCAAGCCCCGGCGGACAGCCGGGGGGCGAGTTT
GATCACCCATCGGCGGCTGAAAGACGGGCCGTTTTCTGGCCGCGCGAAAG
ACGGGCCGTTTTCTGGCCGCGCGGCCGGGGGCAGGGGTGGCGGTGACGTT
CTCGACGAGCTTGAGAAGCGCATCGGTAGCGTTTGA
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