mRNA_E-siliculosus-1a_F_contig1233.1459.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1233.1459.1
Unique NamemRNA_E-siliculosus-1a_F_contig1233.1459.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1233.1459.1 vs. uniprot
Match: D8LJ72_ECTSI (Photosystem II 11 kDa protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ72_ECTSI)

HSP 1 Score: 359 bits (921), Expect = 2.840e-123
Identity = 196/206 (95.15%), Postives = 199/206 (96.60%), Query Frame = 3 
Query:   42 MKTFAACTLALVAGDLAAAFTGPLAARTGATSVARASSSSAVCMSVADEAMSRKNAIAAFSAGAAAVLGAAAVPAAVFAAEEAAAPAPAAVSEDGPPNDWGLTKQYYPDASKMVRHMRYCTNMEKGDPNMADIANNCKKEMVEFVSNYRRSTNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYTDIERAIKRQR 659
            MKTFAACT+ALVAGDLAAAFTGPLAARTGATS     SSSAVCMSV DEAMSRKNAIAAFSAGAAAVLGAAAVPAAVFAAEEAAAPAPAAVSEDGPP+DWGLTKQYYPDASKMVRHMRYCTNMEKGDP MADIANNCKKEMVEFVSNYRRS+NINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYTDIERAIKRQR
Sbjct:    1 MKTFAACTIALVAGDLAAAFTGPLAARTGATSXXXXXSSSAVCMSVGDEAMSRKNAIAAFSAGAAAVLGAAAVPAAVFAAEEAAAPAPAAVSEDGPPSDWGLTKQYYPDASKMVRHMRYCTNMEKGDPYMADIANNCKKEMVEFVSNYRRSSNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYTDIERAIKRQR 206
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1233.1459.1 vs. uniprot
Match: A0A836C8X1_9STRA (Photosystem II Pbs27-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8X1_9STRA)

HSP 1 Score: 174 bits (442), Expect = 5.990e-51
Identity = 91/140 (65.00%), Postives = 110/140 (78.57%), Query Frame = 3 
Query:  276 AAEEAAAPAPA-AVSEDGPPN-----------DWGLTKQYYPDASKMVRHMRYCTNMEKGDPNMADIANNCKKEMVEFVSNYRRSTNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYTDIERAIKRQR 659
            AA  AAA APA A++ DG P            DWGLTK YY DASK+V HMRY T+MEKG  N+ ++A NC++EM++FVS YRR  N++GKLSYSNLYTSI+VLAGHYASYGPKFPVPEKRRKRL++EY+ I++AIKRQR
Sbjct:   45 AAAGAAAVAPALAIAADGTPAVEKVPLGPMPVDWGLTKDYYTDASKVVSHMRYATSMEKGAANIENVAKNCRQEMIDFVSYYRRFPNVSGKLSYSNLYTSINVLAGHYASYGPKFPVPEKRRKRLMEEYSQIDKAIKRQR 184
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1233.1459.1 vs. uniprot
Match: A0A836CEQ5_9STRA (Photosystem II Pbs27-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEQ5_9STRA)

HSP 1 Score: 171 bits (433), Expect = 1.960e-49
Identity = 88/126 (69.84%), Postives = 102/126 (80.95%), Query Frame = 3 
Query:  285 EAAAPAPAAVSEDGP-PNDWGLTKQYYPDASKMVRHMRYCTNMEKGDPNMADIANNCKKEMVEFVSNYRRSTNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYTDIERAIKRQR 659
            E AAPA A +   GP P DWGLTK YY DASK+V HMRY T++EKG   +   A NC++EM++FVS YRR  N++GKLSYSNLYTSI+VLAGHYASYGPKFPVPEKRRKRLL+EY  IE+AIKRQR
Sbjct:   74 EDAAPAKAPL---GPMPTDWGLTKDYYTDASKVVSHMRYATSLEKGAAGIEMTAKNCRQEMIDFVSYYRRFPNVSGKLSYSNLYTSINVLAGHYASYGPKFPVPEKRRKRLLEEYNQIEKAIKRQR 196
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1233.1459.1 vs. uniprot
Match: A0A7S3ZPN6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZPN6_9STRA)

HSP 1 Score: 163 bits (412), Expect = 4.100e-47
Identity = 80/125 (64.00%), Postives = 97/125 (77.60%), Query Frame = 3 
Query:  285 EAAAPAPAAVSEDGPPNDWGLTKQYYPDASKMVRHMRYCTNMEKGDPNMADIANNCKKEMVEFVSNYRRSTNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYTDIERAIKRQR 659
            EA APAP        P DWG+T  YY DA+K+V HMR  T++EKG PNM  IA NCKKEM++FVS YRR TN++GK S+S LYT+I+VLAGHY SYGPKFPVPEKRRKRL QEY ++E+ IK++R
Sbjct:   15 EAEAPAPVEF-----PKDWGITSDYYTDAAKVVAHMRLATSLEKGAPNMEMIALNCKKEMIDFVSFYRRFTNVSGKQSFSTLYTAINVLAGHYTSYGPKFPVPEKRRKRLFQEYAEVEKNIKKRR 134
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1233.1459.1 vs. uniprot
Match: A0A7S2UVY8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVY8_9STRA)

HSP 1 Score: 157 bits (396), Expect = 1.350e-43
Identity = 80/129 (62.02%), Postives = 100/129 (77.52%), Query Frame = 3 
Query:  279 AEEAAAPAPAAVSED-GP-PNDWGLTKQYYPDASKMVRHMRYCTNMEKGDPNMADIANNCKKEMVEFVSNYRRSTNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYTDIERAIKRQR 659
            AEEA APA A    D GP P D+ +  +YYPDA  +V++MRY T M+KG PNM  I  + +K+MV+FV+ YRR+  +NG+LSYS LYTSI+VLAGHYASYGPKFPVPEKRRKRLLQEY DIE+ +++ R
Sbjct:   90 AEEAVAPAAAPAKPDMGPVPTDFKVKGEYYPDAILLVKNMRYATLMDKGTPNMEQIGKSVRKQMVDFVAQYRRNNKVNGRLSYSTLYTSINVLAGHYASYGPKFPVPEKRRKRLLQEYNDIEKNMRKNR 218
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1233.1459.1 vs. uniprot
Match: A0A7R9U8B8_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8B8_9STRA)

HSP 1 Score: 156 bits (395), Expect = 1.420e-43
Identity = 76/120 (63.33%), Postives = 90/120 (75.00%), Query Frame = 3 
Query:  300 APAAVSEDGPPNDWGLTKQYYPDASKMVRHMRYCTNMEKGDPNMADIANNCKKEMVEFVSNYRRSTNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYTDIERAIKRQR 659
            APA+     PP DWGL+ QYY DA ++V HMRY T M K  PN   IA NCKKEM++FVS YRR  N+ GK S+S LYT+I+VLAGHY +YG KFPVPEKR+KRLLQEY +IE+ IKR R
Sbjct:   89 APASTELGPPPTDWGLSNQYYDDAVRVVNHMRYATIMPKSTPNYEAIATNCKKEMIDFVSFYRRFPNVAGKPSFSTLYTAINVLAGHYTNYGVKFPVPEKRKKRLLQEYAEIEKNIKRSR 208
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1233.1459.1 vs. uniprot
Match: A0A7S1XRA0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRA0_9STRA)

HSP 1 Score: 155 bits (393), Expect = 2.510e-43
Identity = 75/115 (65.22%), Postives = 91/115 (79.13%), Query Frame = 3 
Query:  318 EDGP-PNDWGLTKQYYPDASKMVRHMRYCTNMEKGDPNMADIANNCKKEMVEFVSNYRRSTNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYTDIERAIKRQR 659
            E GP P DWGLT +YY DA ++V HMRY T+M KG PN  +IA +CKKEM++FVS YRR  N+ GK S+S LYT+I+VLAGHY +YG KFPVPEKR+KRL QEY +IE+ IKRQR
Sbjct:   90 ELGPAPTDWGLTNEYYKDAPRVVSHMRYATSMPKGTPNYENIAKSCKKEMIDFVSFYRRFPNVAGKPSFSTLYTAINVLAGHYTNYGLKFPVPEKRKKRLFQEYAEIEKNIKRQR 204
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1233.1459.1 vs. uniprot
Match: W7TYA6_9STRA (Photosystem ii 11 kd protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYA6_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.290e-39
Identity = 73/129 (56.59%), Postives = 94/129 (72.87%), Query Frame = 3 
Query:  273 FAAEEAAAPAPAAVSEDGPPNDWGLTKQYYPDASKMVRHMRYCTNMEKGDPNMADIANNCKKEMVEFVSNYRRSTNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYTDIERAIKRQR 659
             AAEE   P  A V    PP ++ L+K+YY DA+++V HM+Y T M +  PN  +IA + K EM +FVS YRR  N+ GK S+S LYT+I+V+AGHYASYGPKFP+PEKRRKRL QE+T+I+R IKR R
Sbjct:   62 LAAEEGGVPTAAPVDLGVPPVNFDLSKEYYKDAAQVVNHMKYATFMNRDTPNYENIAKSVKNEMTDFVSYYRRFNNVAGKPSFSTLYTAINVMAGHYASYGPKFPIPEKRRKRLQQEFTEIDRNIKRNR 190
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1233.1459.1 vs. uniprot
Match: A0A7S3NKQ6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NKQ6_9STRA)

HSP 1 Score: 143 bits (361), Expect = 8.280e-39
Identity = 68/110 (61.82%), Postives = 86/110 (78.18%), Query Frame = 3 
Query:  330 PNDWGLTKQYYPDASKMVRHMRYCTNMEKGDPNMADIANNCKKEMVEFVSNYRRSTNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYTDIERAIKRQR 659
            P ++G+T+ YY DA+K+V HMR  T+++KG PN+  IA   KKEM  FV+ YRR T + GK S+S LYT+I+VLAGHY SYGPKFPVPEKRRKRL QEY +IE+ IKR+R
Sbjct:   74 PTNYGITQDYYTDAAKVVAHMRLATSLDKGSPNIEQIAIETKKEMNAFVAFYRRFTTVTGKQSFSTLYTAINVLAGHYTSYGPKFPVPEKRRKRLYQEYDEIEKNIKRKR 183
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1233.1459.1 vs. uniprot
Match: F0YDF6_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDF6_AURAN)

HSP 1 Score: 140 bits (352), Expect = 1.590e-38
Identity = 66/101 (65.35%), Postives = 83/101 (82.18%), Query Frame = 3 
Query:  357 YYPDASKMVRHMRYCTNMEKGDPNMADIANNCKKEMVEFVSNYRRSTNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYTDIERAIKRQR 659
            YY DA K+V HMR  T+++KG P+M  IA N KKEM++FV+ YRR TN++GK S+S LYT+I+VLAGHY SYGPKFPVPEKRRKRL QEY +IE+ IK++R
Sbjct:    2 YYTDAQKVVAHMRLATSLDKGAPDMEKIALNTKKEMIDFVAFYRRFTNVSGKQSFSTLYTAINVLAGHYTSYGPKFPVPEKRRKRLYQEYAEIEKNIKKRR 102
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1233.1459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ72_ECTSI2.840e-12395.15Photosystem II 11 kDa protein n=2 Tax=Ectocarpus T... [more]
A0A836C8X1_9STRA5.990e-5165.00Photosystem II Pbs27-domain-containing protein n=1... [more]
A0A836CEQ5_9STRA1.960e-4969.84Photosystem II Pbs27-domain-containing protein n=1... [more]
A0A7S3ZPN6_9STRA4.100e-4764.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2UVY8_9STRA1.350e-4362.02Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9U8B8_9STRA1.420e-4363.33Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1XRA0_9STRA2.510e-4365.22Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
W7TYA6_9STRA1.290e-3956.59Photosystem ii 11 kd protein n=2 Tax=Monodopsidace... [more]
A0A7S3NKQ6_9STRA8.280e-3961.82Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
F0YDF6_AURAN1.590e-3865.35Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1233contigE-siliculosus-1a_F_contig1233:15229..21046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size621
Model size852
Exons5
Ec32 orthologEc-02_005010.1
Ec32 ortholog descriptionphotosystem II 11 kDa protein
Hectar predicted targeting categorychloroplast
BRITEko00000,ko00001,ko00194
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2CXSW@1,2RZI3@2759
EggNOG free text desc.Photosystem II Pbs27
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006807,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009543,GO:0009579,GO:0009628,GO:0009642,GO:0009765,GO:0009987,GO:0010206,GO:0015979,GO:0016020,GO:0019538,GO:0019684,GO:0030091,GO:0031976,GO:0031977,GO:0031978,GO:0031984,GO:0034357,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0055035,GO:0071214,GO:0071478,GO:0071482,GO:0071484,GO:0071704,GO:0104004,GO:1901564
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG koko:K08902
Seed eggNOG ortholog2880.D8LJ72
Seed ortholog evalue3.9e-97
Seed ortholog score360.9
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927751.487218-UTR-E-siliculosus-1a_F_contig1233:15228..154181622927751.487218-UTR-E-siliculosus-1a_F_contig1233:15228..15418Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1233 15229..15418 -
1696318666.740495-UTR-E-siliculosus-1a_F_contig1233:15228..154181696318666.740495-UTR-E-siliculosus-1a_F_contig1233:15228..15418Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1233 15229..15418 -
1622927751.6221092-UTR-E-siliculosus-1a_F_contig1233:21005..210461622927751.6221092-UTR-E-siliculosus-1a_F_contig1233:21005..21046Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1233 21006..21046 -
1696318666.804701-UTR-E-siliculosus-1a_F_contig1233:21005..210461696318666.804701-UTR-E-siliculosus-1a_F_contig1233:21005..21046Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1233 21006..21046 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927751.507793-CDS-E-siliculosus-1a_F_contig1233:15418..154601622927751.507793-CDS-E-siliculosus-1a_F_contig1233:15418..15460Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1233 15419..15460 -
1696318666.7524772-CDS-E-siliculosus-1a_F_contig1233:15418..154601696318666.7524772-CDS-E-siliculosus-1a_F_contig1233:15418..15460Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1233 15419..15460 -
1622927751.5578892-CDS-E-siliculosus-1a_F_contig1233:16504..166631622927751.5578892-CDS-E-siliculosus-1a_F_contig1233:16504..16663Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1233 16505..16663 -
1696318666.7616186-CDS-E-siliculosus-1a_F_contig1233:16504..166631696318666.7616186-CDS-E-siliculosus-1a_F_contig1233:16504..16663Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1233 16505..16663 -
1622927751.573459-CDS-E-siliculosus-1a_F_contig1233:17591..176871622927751.573459-CDS-E-siliculosus-1a_F_contig1233:17591..17687Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1233 17592..17687 -
1696318666.7707338-CDS-E-siliculosus-1a_F_contig1233:17591..176871696318666.7707338-CDS-E-siliculosus-1a_F_contig1233:17591..17687Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1233 17592..17687 -
1622927751.5879214-CDS-E-siliculosus-1a_F_contig1233:19167..193441622927751.5879214-CDS-E-siliculosus-1a_F_contig1233:19167..19344Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1233 19168..19344 -
1696318666.785201-CDS-E-siliculosus-1a_F_contig1233:19167..193441696318666.785201-CDS-E-siliculosus-1a_F_contig1233:19167..19344Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1233 19168..19344 -
1622927751.6027195-CDS-E-siliculosus-1a_F_contig1233:20858..210051622927751.6027195-CDS-E-siliculosus-1a_F_contig1233:20858..21005Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1233 20859..21005 -
1696318666.7967403-CDS-E-siliculosus-1a_F_contig1233:20858..210051696318666.7967403-CDS-E-siliculosus-1a_F_contig1233:20858..21005Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1233 20859..21005 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1233.1459.1prot_E-siliculosus-1a_F_contig1233.1459.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1233 15419..21005 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1233.1459.1

>prot_E-siliculosus-1a_F_contig1233.1459.1 ID=prot_E-siliculosus-1a_F_contig1233.1459.1|Name=mRNA_E-siliculosus-1a_F_contig1233.1459.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=207bp
MKTFAACTLALVAGDLAAAFTGPLAARTGATSVARASSSSAVCMSVADEA
MSRKNAIAAFSAGAAAVLGAAAVPAAVFAAEEAAAPAPAAVSEDGPPNDW
GLTKQYYPDASKMVRHMRYCTNMEKGDPNMADIANNCKKEMVEFVSNYRR
STNINGKLSYSNLYTSISVLAGHYASYGPKFPVPEKRRKRLLQEYTDIER
AIKRQR*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1233:15229..21046-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1233.1459.1 ID=mRNA_E-siliculosus-1a_F_contig1233.1459.1|Name=mRNA_E-siliculosus-1a_F_contig1233.1459.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5818bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1233:15229..21046- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGCATTTGATCCGTTGATTGGAGTTAGCATCATCGAAGACCATGAAGACG
TTCGCCGCTTGCACGCTTGCTCTTGTCGCCGGCGACTTGGCTGCCGCTTT
CACGGGCCCCCTGGCTGCCCGCACGGGAGCTACCAGCGTTGCCCGTGCAT
CCTCGAGCTCGGCAGTGTGCATGTCCGTGGCAGACGAGGTGGGTTGCACA
AAACGCGTTACTGCTGTCTGTCTCGATGGGTGTGTGTGTGCTGCAGCAGG
CACGTAGAGACGCTGACAATTGCTGTCTCCTTCTTGGGTGTGCTTGCTGT
TGGGGTGGTGGTTAGGGCCCCTGCTGTCGTTCGCAAGTGCAGTTTTCTCG
TCTGTTGAAAGGTCACATGAACGGGATCGAGACTTGCAGTTAGAGAGCGA
GCGGGTAGGCAGTGTGTGCTGAACGTGCATCACACGGGAGCCCGAGCGAC
TCTGCGTCTCCCTCGCAGCAGGCGGCAGGTATACCGCACGCGAAGAGGGG
AAGCAGATGTAATCGAGAGAGCGATCGGCACGTGAGAAAAGCTGGTGCTC
TTCATGTTTTTCCGTGCATGATCAGACCTAAAAACACGCAGAAGCAGATC
TGATGCGGTTACGTACTCTGTGTCCCAGTGATATGCGTCAGGGTGGTCTT
GCAGCGGTAGATACCAAGGTCAGCAGTAGTTGCCGGCTATCTGGCCGTAC
AACGTAGGTTCGGATTGATCTTGTCGTAGTTCCAACAACCAAGAGCAGTT
GTGATACCTGCATCGGTACTGCGACTAGCAGTTATTGAGCGTAGGGGTGA
TGCCCGGTCGTGGGGTAAATGGATGATGGACAGACCGACCCATGTCATGG
TCGCCTTTTTCCCCACAGCAACTTAAAAGTTTTCCAACACGCGAGTCTCA
CGCACCGCGTGCAGCGCATACGGGTGTTGGGGGTTGCTGTGTGCTTGACC
CTCTCTTCACGCATGCTTCTTGTGCGTGATCCGTGCTGGCAGCTACGTAG
AATTTTGTTCACTGCAGGTGGTGAGTTGTTGCTCATTTTGTTCAACTACA
AGTCAGGAGGGTAAGGGTGCAACTGACGAAACAACACATGTTTCGGCCAA
AGGACGGGTTGCCTTTCCCCCCTCTCTCTGCACACCCCGACCCCATCTAT
TTTGTCGCGCTTCTGTATGCACTCTCGGGCTTCGAAATCGAGAATGGTTC
GTTGTTGTTTTGACACCACACAGACTAGTAGGTAACGTCTCGGGTCCCCC
CGCACTCGAAACAAGTACCACGTAGACTACACGTACTCCAGCTGGTAGCA
CGCAATCTGTCCTTTGATGGAGTATGCAATATGATGCGATAGACGTGTAC
TACCGGTAAAGATTGACTAAGACAACCCAAGTCTCCAGTCGGTGGTTTCA
GTCCACTTACTGCAAAGACTTCACCACATCCCTTTCGACTGAGGTTACAT
GTCGAACGGGTAGTCTTTCTGTGAGGTTGTGTTTACTTTATCTAAAGATT
GCGATGTTAGCAATGGCGATTGTCTGTACCAGGTATTGTACCTGGTATTA
TATTTTGAAGAAAAACAAGAACCATGGCCTGTTGCTGTTCCCGTAAGACT
GCGGGTCATCCCACACCTCCTACGCGGACCCCCGAAGCTCGATAGCGCCA
TGACCGAACTCTCCGCATCTTTTCTTCTTCGTGGCACTGCTGCTGCCAGC
AGGCCATGTCTCGGAAGAACGCGATCGCGGCGTTTTCCGCGGGGGCCGCG
GCGGTGCTCGGCGCGGCGGCGGTGCCGGCGGCGGTTTTCGCAGCGGAGGA
GGCGGCGGCTCCCGCCCCCGCCGCTGTCTCTGAGGACGGGCCACCGAACG
ACTGGGGATTGACCAAGCAGTATTACCCGGTGAGTCTTCTTTTTGGGGGA
AAATACGCGTGTGTTGTTGTTGTCTTCACACCAACAACCGTTCCGGTCTC
CGCTCAGTACCTTCTAGTATCTGTGCTGGTCCAACTGACGCGGACGCCTT
CCGTGGTCTTAAGCCAACAAACTACCCTAAAGAGGAGCACCTTTTTCTAG
AACGGAAAACGAAATATAGAGAGTCGTGGTGCTCGGAATTTACTGAAAAT
GATACGGTAAGGATGCGAGAGATGGCCCCCCCCCCCCGTTGACAATGCTC
GATTGCTCCACAGACACGTGGGTGCGGAAAGAACGTACGGAAAGCCGTCG
ACGAGAAGTTTTCAAATCCACAGCAGTTTGTGGCGTTGGCGCAAGCGTGG
TGGTGGAGCATGAGCTTTGAAAATCGGTCTTGGGGGGGTGATAGGATGAT
GTCTCTCTCGCGTCCTTACGGTGTTCCACATAGCGACAGGCAGCACTCTG
CCTCTGACCGTAATATAAACAGACCGGACCAGACGCATAATTATTCCACG
TGTTCATCGTGATTGAGTTTTGAGTTGAGGACGCCGTCTGGTACATGTGC
TATCCTTGCGTGTTGCTGTTGGCAGTGTGTCTTCGGTGAGTCTTGTCAAG
TGTTGGGAGTACGATTACTGAGACATGGGTGACACAGATAACCGCTCAAG
TTTGCTCTCCAATTGATACAAAGAAAATAATGGGCCTTGAGATGTGCTGC
TTTAGGCATGACACACGGCCGCTGCGAATTGCGCGCAAATGATCAACCAG
CCAGCCAACGTTTAATGCCTGCCTCATTTTTGGGCAGTCCATCACAATAC
CGTCAGCATGAAGCTAACCCTAAAATGCGAGAGCTGTAAACGCAGCAGTA
GTGCGTTATTCGTGGATCGTCAGCATTTACAAGTTTTGTAGACCACACGA
AATCCCGCAAGCACAGCCATGCAACAGATGCGGCAACAAAAGCGTGTGCA
AAATGGCCTCTACTCGCCGAAAATGACTGTTCTCACGACCGGGCCGACAA
TACAACTTAAGCTCTGTTTGGCAGCTGCGAGAGGTGTCAACCGTGTCTCT
TAAATGCGGTGGGATGATAGTCGCTGGGTGTACCACGGATTCGCGAGTCA
GAAACAAACACTCACAGGACAGGATTTAAGGCACCTTGCATGTCCTACGG
TTGTCGTCGGTGCTTGTCGCTTCTCACATTCCTTAGTAACAGCCCATCTC
GGTTAAGACGAGTTTTTTTCTAGCATGTCGAGGCTTTCTCATGGATAAGA
CTTGTCGCCTAGTATTAGTAGTAGACGTCGCCCCCCCCCCCCCCTCCGTT
TTTCCTCTTGGTGTGATTTGATCTGTCTTCGACTCCTCTTAGCGGAAACC
CGACTAGGGCACGAACGGTGATTGCACCCAGACGTGGTTGAAATCCAATG
CTAACCCACAGCTGACGGTTGTTGCTGTTGCCGCACCCCCCCTGGGTTTT
GCACTGCAGGATGCCTCCAAGATGGTTAGGCACATGAGGTACTGCACCAA
CATGGAGAAGGGAGACCCCAACATGGCGGATATTGCCAACAACTGCAAGA
AGGAGGTACAGTCCGTAGGTTGAGCTAGCTGCGATGCATAACCTATGTAG
CGTCAAGGCATGGAGAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCGCCCCCCCCCGCGC
NNNNNNNNNNCAAGAGGAGGGAGGGGCGGGGGGGTGGAGGAGGCTCCAAC
CCAAACCTTATGTGGCGCAAGGGAGGGGGCCCCCCCCCCCCCCCCCCCCC
CCCAGGCACGTACACACCGGGGAGCCCCATGTTTCGTTTTGACAAAGGAT
TTGGCGCGGGCAAAGGGGACGATTACTCTCGAGCACCCTCGCTGGTGTTG
ATGTTGATGTACGGTTTGGGGGTACTCGTGGATTTCGCGAGGAAACGTAG
TAATGCCCTCCGAGACCTGTTTGGGAACAGGATTGACCTGCCCACGTGTA
TCGGTGGAAGCAGTGTTGGCGCCCATTCGGACGAACAAAACGCTATCGCC
GAGGCCTTTCATCCTCACTCTGACTCTCTTGTGAGTTTTTTACGTCAGCG
CTGTTCGCATGATGTGGCGGATTGTACCGGCTCTCGATGGCTACTGCTTC
AGCTCTTCGTCCTCGGCTTTCCTGTAAGACCCCCCACCATTCATTTCCCC
TTCTGCCTATTCCGAGACCAACAGCTGCGAATTGTATTTCGCAAAAGCAC
AGACGACACAAAAGCCTTCTTTTTTTGTTGTTCCGCGGCCTTCAGGCGGA
CACACGGACACGGACCACGAAATTTTTTTCAACTAACACATCTTCTTGTA
CAATAAGACGACATGTTTTTACCCCATGGCACCCGTACAATGATATCACG
CCGCACCCATACACCCTTCCATCACAATCGCGGCTATCCACCCACTGTTG
CGTCCATCTTTCACGCACGCGCGACACATGCAGATGGTGGAGTTCGTGTC
TAACTACCGCCGCTCGACCAACATCAACGGCAAGCTGTCGTACTCCAACC
TCTACACGTCCATCTCGGTGCTGGCGGGACACTACGCCTCGTACGGCCCC
AAGTTCCCCGTACCCGAGAAGCGCCGGAAGCGCCTGTTGCAGGTGTGTGT
GTGTGTGCATTTTTTATTGTTAGCATCCACCGCGCTAACCGGCTGACCAA
TGAAAAGACGGCAATCTTATGCGGTTGAAAACACAAAACACTTTTATCTG
CCATGAACTGGGACCCCGTGAAGGGGCAGCATCGTTGTGTGTGTGTTTTT
TTTTTTTTGCTTCTTATTAGTATCGACCGGGCTAACCGGCTGACCAATGA
AAATTCGCCAGTCTCCGTGCGTATGAAACAAATACAAAATGCTTGTATGG
CCACGATCTGGGACCCCCGTGGTGTGTGTGTGTGTGTTGTTGATTGGTAG
TTATTATCACCGACCGCGCTAACTGACCAATGAAAATACGTCAGTCTCAG
CGCGGTTCAAAACACAAAATGCCTCCAAAGGCCACGATCTGGGACCCCGT
GACGTGTGTGTGTGTGTGTTGTTATTAGTTATATCATCGACCGCGCTAAC
TGACCAAATGAAAATACCGAAGTCTCAGCGCGGTTCAAAACACAAGAGGT
CTCTAAAGGCCACGATCTGGGACCCCGTGAGAGGGCGTGATGGGGGAGTC
TATGCTACTCTCCGGATCAAAGACACATACCATAGCAATGACGGAAGAAA
TTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCTTGAAAAATGTGCCACAG
TAGCGGGCGTGTGTTTCAGGGGGCGTTTCGGGGGCACACAGACGTGTTGA
GTATGCATGCACCAGGCGTTTTCACGGAGCGCCCTGTCGTAGACAACAAG
CAGCGCTTGACAATTTACGGGAATGTGCGTGTGATCTGGGTCCGGTGTTT
GTCGTCGTTCCTACATCGGCTCGCAGCATGGCCCGGAGTTCCGGTTTTAC
GGGGTCCTCTCCCAACGCCGTCGACACGAGTTGATCACCCCGTCGACAAA
AAAGTTCACGATGAACACATCTGACTGCTTGCAATGCCCTCGCTACGTGC
GTGCGTGAAACTGCTGCCGTTTTCTGTTGCCGCGCTCGTTTTTTTTTTTT
GCCCGCGTCGCTTGGTTCGTGTGTGCTTTTATGTAGGAGTACACCGACAT
CGAGCGAGCGATCAAGCGCCAGCGTTAACTTCGCGCCCGCGTCATCTCGT
CTTGTAGCTGCGGTGTTGTCGACGGTAAGACCGGCAGTTCATGGGAGCAT
GGCTGACGCTAGCCGAGTGGGCAGCCGTTTCGTAAAAAGAGGGACAAAGG
GTGTCCCCTCTGTTTTGCGGAAATTATAGTTCAGGTTCGCAATTAGGTAG
GCGGCTGCCACGTGGGGA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1233:15229..21046-

>mRNA_E-siliculosus-1a_F_contig1233.1459.1 ID=mRNA_E-siliculosus-1a_F_contig1233.1459.1|Name=mRNA_E-siliculosus-1a_F_contig1233.1459.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1242bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1233:15229..21046- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAGACGTTCGCCGCTTGCACGCTTGCTCTTGTCGCCGGCGACTTGGC
TGCCGCTTTCACGGGCCCCCTGGCTGCCCGCACGGGAGCTACCAGCGTTG
CCCGTGCATCCTCGAGCTCGGCAGTGTGCATGTCCGTGGCAGACGAGATG
AAGACGTTCGCCGCTTGCACGCTTGCTCTTGTCGCCGGCGACTTGGCTGC
CGCTTTCACGGGCCCCCTGGCTGCCCGCACGGGAGCTACCAGCGTTGCCC
GTGCATCCTCGAGCTCGGCAGTGTGCATGTCCGTGGCAGACGAGGCCATG
TCTCGGAAGAACGCGATCGCGGCGTTTTCCGCGGGGGCCGCGGCGGTGCT
CGGCGCGGCGGCGGTGCCGGCGGCGGTTTTCGCAGCGGAGGAGGCGGCGG
CTCCCGCCCCCGCCGCTGTCTCTGAGGACGGGCCACCGAACGACTGGGGA
TTGACCAAGCAGTATTACCCGGCCATGTCTCGGAAGAACGCGATCGCGGC
GTTTTCCGCGGGGGCCGCGGCGGTGCTCGGCGCGGCGGCGGTGCCGGCGG
CGGTTTTCGCAGCGGAGGAGGCGGCGGCTCCCGCCCCCGCCGCTGTCTCT
GAGGACGGGCCACCGAACGACTGGGGATTGACCAAGCAGTATTACCCGGA
TGCCTCCAAGATGGTTAGGCACATGAGGTACTGCACCAACATGGAGAAGG
GAGACCCCAACATGGCGGATATTGCCAACAACTGCAAGAAGGAGGATGCC
TCCAAGATGGTTAGGCACATGAGGTACTGCACCAACATGGAGAAGGGAGA
CCCCAACATGGCGGATATTGCCAACAACTGCAAGAAGGAGATGGTGGAGT
TCGTGTCTAACTACCGCCGCTCGACCAACATCAACGGCAAGCTGTCGTAC
TCCAACCTCTACACGTCCATCTCGGTGCTGGCGGGACACTACGCCTCGTA
CGGCCCCAAGTTCCCCGTACCCGAGAAGCGCCGGAAGCGCCTGTTGCAGA
TGGTGGAGTTCGTGTCTAACTACCGCCGCTCGACCAACATCAACGGCAAG
CTGTCGTACTCCAACCTCTACACGTCCATCTCGGTGCTGGCGGGACACTA
CGCCTCGTACGGCCCCAAGTTCCCCGTACCCGAGAAGCGCCGGAAGCGCC
TGTTGCAGGAGTACACCGACATCGAGCGAGCGATCAAGCGCCAGCGTTAA
GAGTACACCGACATCGAGCGAGCGATCAAGCGCCAGCGTTAA
back to top