mRNA_E-siliculosus-1a_F_contig1224.1410.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1224.1410.1 vs. uniprot
Match: D7FTM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM1_ECTSI) HSP 1 Score: 541 bits (1394), Expect = 1.260e-179 Identity = 408/449 (90.87%), Postives = 413/449 (91.98%), Query Frame = 1
Query: 1 HRAGHFRVLYPTAENVTRLWPIFRSPRFLNGVLARWVLTGGLTNPTNRQDIGLIAERLATLGKSQGGKGLSSTSGGMIAAGGSKGPKGKGRGLWEETTSNXXXXXXXXXXXXARLGDELPGSSPWSGSGGERPASSATSRASRPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--RVDGRRADKVAAAPGGGRGAVTGHNVVGGAERPSRVVPRLQLRRAESRLALAPSLLTLRTPVVLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-RPPSTHRLDGSGISRGGNPSGEVATAVAGNGDDPFATGLMPFRYAGATSSTDGPASFRSFSGASLRCRAVALADSRPQGASGRIVDSVASVSNGGAPPSDAEPARGGGARESTKAGALATREELFPGAAAASGRGLSVADCVRP 1338
HRAGHFRVLYPTAENVTRLWPIFRSPRFLNGVLARWVLTGGLTNPTNRQDIGLIAERLATL KSQGGKGLSST G+IA GGSKGPKGKGRGLWEET SN ARLGDELPGSSPWSGSGGERPASSATSRASRPS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RVDGRRADKVAAAPGGGRGAV GHNVVGGAERPSRVVPRLQLRRAESRLALAPSLLTLRTPVVLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RPPSTHRLDGSG EVATAVAGNGDDPFATGL+ FRYAGATSSTDGPASFRSFSGASLRCRAV+LADSR QGASGRIVDS+ASV+NGGAPPSDAEPARGGGAREST AGAL TREELFPGAAAASGRGLSVADCVRP
Sbjct: 696 HRAGHFRVLYPTAENVTRLWPIFRSPRFLNGVLARWVLTGGLTNPTNRQDIGLIAERLATLAKSQGGKGLSSTGSGVIAGGGSKGPKGKGRGLWEETNSNATTVVATRGGGVARLGDELPGSSPWSGSGGERPASSATSRASRPSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVDGRRADKVAAAPGGGRGAVAGHNVVGGAERPSRVVPRLQLRRAESRLALAPSLLTLRTPVVLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPSTHRLDGSGTK-------EVATAVAGNGDDPFATGLVSFRYAGATSSTDGPASFRSFSGASLRCRAVSLADSRQQGASGRIVDSMASVTNGGAPPSDAEPARGGGARESTNAGALTTREELFPGAAAASGRGLSVADCVRP 1137
BLAST of mRNA_E-siliculosus-1a_F_contig1224.1410.1 vs. uniprot
Match: A0A6H5K6N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N2_9PHAE) HSP 1 Score: 456 bits (1172), Expect = 5.030e-152 Identity = 402/578 (69.55%), Postives = 407/578 (70.42%), Query Frame = 1
Query: 1 HRAGHFRVLYPTAENVTRLWPIFRSPRFLNGVLARWVLTGGLTNPTNRQDIGLIAERLATLGKSQGGKGLSSTSGGMIAAGGSKGPKGKGRGLWEETTSNXXXXXXXXXXXXARLGDELPGSSPWSGSGGERPASSATSRASRPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVDGRRADKVAAAPGGGRGAVTGHNVVGGAERPSRVVPRLQLRRAESRLALAPSLLTLRTPVVLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPSTHRLDGSGISRGGNPSG------------------------------------------------------------------------------------------------------------------------------------EVATAVAGNGDDPFATGLMPFRYAGATSSTDGPASFRSFSGASLRCRAVALADSRPQGASGRIVDSVASVSNGGAPPSDAEPARGGGARESTKAGALATREELFPGAAAASGRGLSVADCVRP 1338
HRAGHFRVLYPTAENVTRLWPIFRSPRFLNGVLARWVLTGGLTNPTNRQDIGLIAERLATLGKSQGGK LSSTSGGMIA GGSKGPKGKGRGLWEETTSNXXXXXXXXXXXXARLGDELPG+SPWSGSGGERPASSATSRASRPS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXX XXXXXXXXXX R GAV GHNVVGGAERPSRVVPRLQLRRAE+RLALAPSLLTLRTPVVLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX THRLDGSG SRGGNPS EVATAV+GNGDDPFATGLMPFRYAGAT STDGPASFRSFSGASLRC AVALAD R QGAS RIVDS+ASVSNGGAPPSDAEPARGGGARESTKA ALATREELF GAAAASGRG +VADCVRP
Sbjct: 101 HRAGHFRVLYPTAENVTRLWPIFRSPRFLNGVLARWVLTGGLTNPTNRQDIGLIAERLATLGKSQGGKALSSTSGGMIAGGGSKGPKGKGRGLWEETTSNXXXXXXXXXXXXARLGDELPGASPWSGSGGERPASSATSRASRPSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHRXXXGXXXXXXXXXXXXXXR-------------GAVAGHNVVGGAERPSRVVPRLQLRRAETRLALAPSLLTLRTPVVLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTHRLDGSGNSRGGNPSDSGGGSGAPPSVVSLEVKPLGFTSALSTGEKWGPQVAAFPAPLLCLPGAAEVVKKTNATPRRRSLQQHQDHEQVFAKSNSRVPALPDGCGGXXXXXXATAVSPRGVRQAVTGRNSNDQICFPRPPCRAAGRAEEVATAVSGNGDDPFATGLMPFRYAGATLSTDGPASFRSFSGASLRCHAVALADWRQQGASSRIVDSMASVSNGGAPPSDAEPARGGGARESTKAEALATREELFLGAAAASGRGRNVADCVRP 665 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1224.1410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1224.1410.1 >prot_E-siliculosus-1a_F_contig1224.1410.1 ID=prot_E-siliculosus-1a_F_contig1224.1410.1|Name=mRNA_E-siliculosus-1a_F_contig1224.1410.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=447bp HRAGHFRVLYPTAENVTRLWPIFRSPRFLNGVLARWVLTGGLTNPTNRQDback to top mRNA from alignment at E-siliculosus-1a_F_contig1224:2190..3929- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1224.1410.1 ID=mRNA_E-siliculosus-1a_F_contig1224.1410.1|Name=mRNA_E-siliculosus-1a_F_contig1224.1410.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1740bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1224:2190..3929- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1224:2190..3929- >mRNA_E-siliculosus-1a_F_contig1224.1410.1 ID=mRNA_E-siliculosus-1a_F_contig1224.1410.1|Name=mRNA_E-siliculosus-1a_F_contig1224.1410.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2682bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1224:2190..3929- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |