mRNA_E-siliculosus-1a_F_contig1218.1379.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1218.1379.1 vs. uniprot
Match: D8LD61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD61_ECTSI) HSP 1 Score: 633 bits (1632), Expect = 1.220e-215 Identity = 328/339 (96.76%), Postives = 332/339 (97.94%), Query Frame = 3
Query: 72 MASQERGRREQPSRSHGKKMPAYRPPSDFRVNVEAGLRTTLSLGLVFLWLGFGPFGGGLSFFAGVTAIVCVGGSAGQTISRSLMMTHGALVGAICAILPRWLMQWGRFPAGAGFFAAVFLVLRSRRLTSLGKKFGCVGVTLLVLGKMSDDGLTLSWWGSVATFVRVHVEGGVTALVASLLPYPRLATREGALRAQFMCHSLSSAVDACVTGFIKARDETSISRARLLCLQVRQNLEIIRMELGWSRLELGLLFGGFCAGGMQSANALEELSEVMEQVLQGVRGMRQSMVDMHRTRAQASFSRVVGSSLRDVSRAVDVTLEATSRRSALLPASILACCHR 1088
MA+Q RREQ SRSHGKKMPAYRPPSDFRVNVEAGLRTTLSLGLVFLWLGFGPFGGGLSFFAGVTAIVCVGGSAGQTISRSLMMTHGALVGAICAILPRWLMQWGRFPAGAGFFAAVFLVLRSRRLTSLGKKFGCVGVTLLVLGKMSDDGLTLSWWGSVATFVRVH+EGGVTALVASLLPYPRLATREGALRAQFMCHSLSSAVDA VTGFIK RDETSISRARLLCLQVRQNLEIIRMELGWSRLELGLLFGGFCAGGMQSANALEELSE+MEQVLQGVRGMRQSMVDMHRTRAQASFSRVVGSSLR VS+AVDVTLEATSRRSALLPASILACCHR
Sbjct: 1 MANQGHDRREQTSRSHGKKMPAYRPPSDFRVNVEAGLRTTLSLGLVFLWLGFGPFGGGLSFFAGVTAIVCVGGSAGQTISRSLMMTHGALVGAICAILPRWLMQWGRFPAGAGFFAAVFLVLRSRRLTSLGKKFGCVGVTLLVLGKMSDDGLTLSWWGSVATFVRVHIEGGVTALVASLLPYPRLATREGALRAQFMCHSLSSAVDARVTGFIKGRDETSISRARLLCLQVRQNLEIIRMELGWSRLELGLLFGGFCAGGMQSANALEELSELMEQVLQGVRGMRQSMVDMHRTRAQASFSRVVGSSLRGVSKAVDVTLEATSRRSALLPASILACCHR 339
BLAST of mRNA_E-siliculosus-1a_F_contig1218.1379.1 vs. uniprot
Match: A0A6H5JZ72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ72_9PHAE) HSP 1 Score: 184 bits (467), Expect = 5.520e-50 Identity = 96/101 (95.05%), Postives = 99/101 (98.02%), Query Frame = 3
Query: 786 RMELGWSRLELGLLFGGFCAGGMQSANALEELSEVMEQVLQGVRGMRQSMVDMHRTRAQASFSRVVGSSLRDVSRAVDVTLEATSRRSALLPASILACCHR 1088
RMELGWSRLELGLLFGGFCAGGMQSANALEELSE+MEQVLQGVRGM QSMVDMHRTRAQ SFSRVVGSSLRDVS+AVD+TLEATSRRSALLPASILACCHR
Sbjct: 4 RMELGWSRLELGLLFGGFCAGGMQSANALEELSELMEQVLQGVRGMLQSMVDMHRTRAQVSFSRVVGSSLRDVSKAVDLTLEATSRRSALLPASILACCHR 104
BLAST of mRNA_E-siliculosus-1a_F_contig1218.1379.1 vs. uniprot
Match: A0A836CDY4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDY4_9STRA) HSP 1 Score: 160 bits (404), Expect = 1.260e-39 Identity = 107/296 (36.15%), Postives = 157/296 (53.04%), Query Frame = 3
Query: 132 PAYRPPSDFRVNVEAGLRTTLSLGLVFLWLGFGPFGGGLSFFAGVTAIVCVGGSAGQTISRSLMMTHGALVGAICAILPRWLMQWGRFPAGAGFFAAVFLVLRSRRLTSLGKKFGCVGVTLLVLGKMSDDGLTLSWWGSVA-TFVRVHVEGGVTALVASLLPYPRLATREGALRAQFMCHSLSSAVDACVTGFIKARDETSISRARLLCLQVRQNLEIIRMELGWSRLELGLLFGGFCAGGMQSANALEELSEVMEQVLQGVRGMRQSMVDMHRTRAQASFSRVVGSSLRDVSRAV 1016
P Y S+FR +EA RT L+ + +W+ F + F + AIV +AG T+ L + HG + A A++ + + + G F FL+LR RRL LG++ GC L+ +S L + W S ++R VEGG+ +L+ASLLPYPRLA REGALR+Q+MC+ L ACV GF+ RDE ISRA LL Q+R N I+ G +EL +LF G AGG+ + +S+ M ++ V GMRQ+++ + Q+ F + L+D A+
Sbjct: 43 PVYVAESEFRRGLEASFRTALATLISLVWITFRADPHPVIFINTILAIVTTLDTAGATLVAQLSVLHGVSLAAALAVITELVARNSAWGTGMCIFIGNFLILRRRRLDVLGRRLGCA---TLLAAALSFRTLGVDGWSSYLWAWLRGIVEGGICSLLASLLPYPRLAIREGALRSQYMCYLLQRGTSACVDGFLAGRDERMISRAGLLAEQMRLNCARIKGLHGACYMELNVLFWGQ-AGGLAPVELMGLVSQNMAPRVECVEGMRQALIALEHDAEQSGFIEHLWPHLQDTKHAL 334
BLAST of mRNA_E-siliculosus-1a_F_contig1218.1379.1 vs. uniprot
Match: A0A836CQ15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQ15_9STRA) HSP 1 Score: 135 bits (341), Expect = 2.530e-31 Identity = 87/213 (40.85%), Postives = 120/213 (56.34%), Query Frame = 3
Query: 138 YRPPSDFRVNVEAGLRTTLSLGLVFLWLGFGPFGGGLSFFAGVTAIVCVGGSAGQTISRSLMMTHGALVGAICAILPRWLMQWGRFPAGAGFFAAVFLVLRSRRLTSLGKKFGCVGVTLLVLGKMSDDGLTLSWWGSVATFVRVHVEGGVTALVASLLPYPRLATREGALRAQFMCHSLSSAVDACVTGFIKARDETSISRARLLCLQVRQNL 776
++ S+FR ++EA LRT L+ W GP L+FF+ V AIV +AG TI+ SL HGAL GA A L R + + AG F FL++R RRL SLG+K CV + + VL +D +W S+ ++ + EGGV A +A ++PYPRLA REGALRAQ+ C + A+ +CV GF R ++ LL Q+R NL
Sbjct: 10 FKAESEFRRSLEAALRTGLAAAASIAWAEVGPIRNPLNFFSPVVAIVVTLDTAGGTIAASLGCLHGALSGAFFAFLIRLIADQNCWVAGLLMFIGFFLIVRRRRLNSLGRKIACVTLIVAVLTFERED--VTAWIMSMLSWYKSVFEGGVWATLALMVPYPRLALREGALRAQYTCKLMQRAMVSCVEGFKMGR--RVLTDMDLLIEQMRLNL 218 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1218.1379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1218.1379.1 >prot_E-siliculosus-1a_F_contig1218.1379.1 ID=prot_E-siliculosus-1a_F_contig1218.1379.1|Name=mRNA_E-siliculosus-1a_F_contig1218.1379.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=339bp MASQERGRREQPSRSHGKKMPAYRPPSDFRVNVEAGLRTTLSLGLVFLWLback to top mRNA from alignment at E-siliculosus-1a_F_contig1218:270..7538- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1218.1379.1 ID=mRNA_E-siliculosus-1a_F_contig1218.1379.1|Name=mRNA_E-siliculosus-1a_F_contig1218.1379.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7269bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1218:270..7538- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1218:270..7538- >mRNA_E-siliculosus-1a_F_contig1218.1379.1 ID=mRNA_E-siliculosus-1a_F_contig1218.1379.1|Name=mRNA_E-siliculosus-1a_F_contig1218.1379.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2034bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1218:270..7538- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |