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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1216.1374.1 vs. uniprot
Match: D7G7Z2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z2_ECTSI) HSP 1 Score: 159 bits (401), Expect = 1.880e-41 Identity = 243/284 (85.56%), Postives = 245/284 (86.27%), Query Frame = 1
Query: 1 MSGVDKLLEIGGSIDVRDTAQRTLLHRACEEASITTVSXXXXXXXXXXXXXXXXXXXXXXXXXXXRLDIVRLLVEKAGADSRARAKVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAIGPKGHRPLHLAAKEERAVIVELLIGRKADLHAKDDRGRDALHYTDSRRCKERIREAQRREERAAEAQRQLALQKKREXXXXRREQELLDRVDLRARARR 852
MSGVDKLLEIGGSIDVRDTAQRTLLHRACEEASI TV XXXXXXXXXXXXXXXXXXXXXXXXXXXRL+IVRLLVEKAGADSRARAKVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AIGPKGHR DALHYTDSRRCKERIREAQRREERAAEAQRQLALQKKR+ RREQELLDRVDLRARARR
Sbjct: 229 MSGVDKLLEIGGSIDVRDTAQRTLLHRACEEASIATVXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLEIVRLLVEKAGADSRARAKVMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIGPKGHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDALHYTDSRRCKERIREAQRREERAAEAQRQLALQKKRDDENRRREQELLDRVDLRARARR 512
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 855 |
| Model size | 855 |
| Exons | 5 |
| Ec32 ortholog | Ec-06_009530.1 |
| Ec32 ortholog description | Ankyrin repeat-containing domain |
| Hectar predicted targeting category | other localisation |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| COG Functional cat. | G |
| EggNOG OGs | COG0666@1,KOG4177@2759 |
| EggNOG free text desc. | response to abiotic stimulus |
| Seed eggNOG ortholog | 2880.D7G7Z2 |
| Seed ortholog evalue | 3.7e-37 |
| Seed ortholog score | 162.2 |
| Taxonomic scope | Eukaryota |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1216.1374.1 >prot_E-siliculosus-1a_F_contig1216.1374.1 ID=prot_E-siliculosus-1a_F_contig1216.1374.1|Name=mRNA_E-siliculosus-1a_F_contig1216.1374.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=285bp
MSGVDKLLEIGGSIDVRDTAQRTLLHRACEEASITTVSRLLELGATVNAT
EKRKQTPLHRACERGRLDIVRLLVEKAGADSRARAKVMHEPLHVACLGNW
GQVVKFLLSEGNVDVEAVDKNGMRSLHLAVQRNRLEAIRELLKHGCDVEA
TMPDGLTRPLHMACASGYEKAATLLLDHHAEIGAIGPKGHRPLHLAAKEE
RAVIVELLIGRKADLHAKDDRGRDALHYTDSRRCKERIREAQRREERAAE
AQRQLALQKKREEENRRREQELLDRVDLRARARR* back to topmRNA from alignment at E-siliculosus-1a_F_contig1216:16422..18973- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1216.1374.1 ID=mRNA_E-siliculosus-1a_F_contig1216.1374.1|Name=mRNA_E-siliculosus-1a_F_contig1216.1374.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2552bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1216:16422..18973- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGCGGAGTTGACAAGCTTCTGGAGATCGGCGGGTCGATCGACGTCAG
GGACACCGCTCAACGCACGCTGTTGCATCGAGCCTGCGAGGAGGTGAGCT
GCCTTTTCTTGGATAGAGAAGTGCTACGGCGGTTGCATTCATATGTCGAT
GTCTGTGCAACAATCACAGGGTGTCCACTACGCTGGTGGCAGTGGTTGTG
TCGTGAACATGGATCAAGGATTTTCGTTGACCACCGCCGCCGTTTTGGAG
ATAACCCGGTGAGGTCCCGTTGTCGCCGTCGTGCGGAACACGGTTCGCAC
TACAAATCTTACAGTTGCTAAATTATTATTTTTTCTTGGCGATGTGCTAC
CCAGGAGAATGGGCCAAGTTTAGCAACGAAAACTGTTGTGGTACAGGTTT
ACGCCATGAGCACCACGTATCCGAAACGTCGATGTACCCTTGGGACGGAG
ATGTTGTCAATTTACGCACCACGTGTCGGAATTATTCGTGTTTCGGTTTC
CGCCCGTGCGATAGGCAAGTATCACCACAGTGTCCAGGCTTTTGGAGCTC
GGAGCCACCGTGAACGCCACTGAGAAACGCAAGCAGACGCCACTCCATCG
TGCGTGCGAGCGGGGCCGCTTGGACATAGTCAGGTACCCCCCCCCAAGCA
CCTCGCTTTTTAACGAGACAGGAGGTTGGTTGAAGAGTCTAGGGACGTTC
ACCATCGTGCGTGCACGACATACGCACGTCTGCGCGGTTCGGTGGGTAAC
ACTGCCGGTTGAGTCACCAAGGGTGACAGGTGTTGTGAGCGTCCTGCCCC
CGATAAGAAGTCGTGCAATGTGCTCGTGCTAGCTCAGTTTTCACCCCATA
CAAGAACACACACTGCAGGAGATATCGTAGCACGAGCTTACACGTAGTTT
CGATTTCAACAGCCGAAGAATACAACCGTGATATTGCCCAGCTGTTTGCT
TTCCTTCAGTGCCAGCACCACCCGCCTCTGTTCCTCGCGAAGGACCACGA
TCCACGTCATACTCAGCACTGCGATCGCCGGACGACGATGTTTGTGACCT
CATGTACTCTGCAAGGTTATTGGTCGAGAAGGCAGGAGCTGACAGTCGCG
CCCGGGCGAAGGTCATGCATGAGCCGCTGCACGTGGCGTGCCTCGGAAAC
TGGGGACAGGTGGTGAAGTTCTTGCTCAGCGAAGGGAACGTGGACGTTGA
GGCAGTCGACAAAAATGGCATGAGGAGCCTGCACCTGGCCGTCCAAAGGA
ACAGGCTGGAGGCCATTCGGGAGTTGCTCAAGCACGGGTGCGGAGGTTTA
TCAGTCGCGGTTGCGTTAATGCACGTTGGGCAGCTTGGCCGCCCGACGTT
CAATAGCGAACGAGTAATGAGAACGTGTTTTTAATGTCTGATGACTCTCG
AGTGCCTCACTTTTGACAGTCTGGCTTCGTCGATCCAGTGAAAAATTATA
TTTGTTCACAGCGACGACATTTTTTCGACTGCGTGCAGCCATGCCTTTGT
TGGCGTGGGTCTCGATCGCTCTTAATCCCGACAGCTTTGCCAAACACGCC
GCTTTCGAGTAGACCAAGACCGCGCAACACCGACCCACACGACGTGTGAC
AACAACAACGTGGGGTGTGGCAACCTTATTCGCAGGTGCGACGTCGAGGC
CACGATGCCTGACGGGCTTACGCGACCCCTGCACATGGCTTGCGCTAGCG
GGTACGAGAAGGCCGCAACGCTCCTGCTGGACCACCACGCCGAAATCGGC
GCAATAGGTCCCAAAGGGCATCGTCCCCTACACCTGGCTGCCAAGGAGGA
GCGAGCCGTCATTGTTGAGGTGAGAAAAAACAACGACTTCATGATTGTCT
GCTCTCCCACCTTTGTATGTGTTGTTATTTCGTGGGTTGACAGCTCACCT
GAGGAGTATAGCCCCGGTGATATATTTCCCCAGAACAATGAAACTGCTTA
GGGCGGACAGGGTCTTCTCCCGTAGACGGCGCTCGTAAGGCGTTCCGAGG
TCGTAGTGGTCTGAGCCCGTCATGCAGGGCAGACGGGTTTTTCCTTGTAC
CGGCAAGGACAGGCCAAGAGCGCCGTCATCCACGCTGCTGTTGGTTGGTG
TGTCTGGGCAGGAGTGAAAATGGGCTGTTGTCGGTCGGGGGAAAACCAGG
GGATGTAGACACGAGGCAGACATATGCTGTGTCTTCGCTCGCTCGCCCAA
AAAACCAGGCACTTGCTGAGGCAAAGCTCCCACCACCTCCCTCCCGAGGA
ACAGGTGCTGGTCATGACACTTGACGATGAGCCCACAAACCCCCCACCAT
ACCTTGGCGCCGTAGCTTCTGATAGGGCGAAAAGCGGATTTGCACGCCAA
GGATGACAGGGGGCGAGACGCTCTACACTACACCGACAGCCGGAGGTGCA
AGGAAAGGATTCGGGAGGCGCAGCGGAGGGAGGAGCGGGCTGCCGAGGCG
CAGAGGCAGCTGGCTCTCCAGAAGAAGAGGGAGGAGGAGAACCGGCGAAG
GGAGCAGGAGCTGCTGGACAGGGTCGACCTGCGGGCGAGAGCACGGCGAT
AG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1216:16422..18973- >mRNA_E-siliculosus-1a_F_contig1216.1374.1 ID=mRNA_E-siliculosus-1a_F_contig1216.1374.1|Name=mRNA_E-siliculosus-1a_F_contig1216.1374.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1710bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1216:16422..18973- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGCGGAGTTGACAAGCTTCTGGAGATCGGCGGGTCGATCGACGTCAG
GGACACCGCTCAACGCACGCTGTTGCATCGAGCCTGCGAGGAGATGAGCG
GAGTTGACAAGCTTCTGGAGATCGGCGGGTCGATCGACGTCAGGGACACC
GCTCAACGCACGCTGTTGCATCGAGCCTGCGAGGAGGCAAGTATCACCAC
AGTGTCCAGGCTTTTGGAGCTCGGAGCCACCGTGAACGCCACTGAGAAAC
GCAAGCAGACGCCACTCCATCGTGCGTGCGAGCGGGGCCGCTTGGACATA
GTCAGGCAAGTATCACCACAGTGTCCAGGCTTTTGGAGCTCGGAGCCACC
GTGAACGCCACTGAGAAACGCAAGCAGACGCCACTCCATCGTGCGTGCGA
GCGGGGCCGCTTGGACATAGTCAGGTTATTGGTCGAGAAGGCAGGAGCTG
ACAGTCGCGCCCGGGCGAAGGTCATGCATGAGCCGCTGCACGTGGCGTGC
CTCGGAAACTGGGGACAGGTGGTGAAGTTCTTGCTCAGCGAAGGGAACGT
GGACGTTGAGGCAGTCGACAAAAATGGCATGAGGAGCCTGCACCTGGCCG
TCCAAAGGAACAGGCTGGAGGCCATTCGGGAGTTGCTCAAGCACGGGTTA
TTGGTCGAGAAGGCAGGAGCTGACAGTCGCGCCCGGGCGAAGGTCATGCA
TGAGCCGCTGCACGTGGCGTGCCTCGGAAACTGGGGACAGGTGGTGAAGT
TCTTGCTCAGCGAAGGGAACGTGGACGTTGAGGCAGTCGACAAAAATGGC
ATGAGGAGCCTGCACCTGGCCGTCCAAAGGAACAGGCTGGAGGCCATTCG
GGAGTTGCTCAAGCACGGGTGCGACGTCGAGGCCACGATGCCTGACGGGC
TTACGCGACCCCTGCACATGGCTTGCGCTAGCGGGTACGAGAAGGCCGCA
ACGCTCCTGCTGGACCACCACGCCGAAATCGGCGCAATAGGTCCCAAAGG
GCATCGTCCCCTACACCTGGCTGCCAAGGAGGAGCGAGCCGTCATTGTTG
AGGTGCGACGTCGAGGCCACGATGCCTGACGGGCTTACGCGACCCCTGCA
CATGGCTTGCGCTAGCGGGTACGAGAAGGCCGCAACGCTCCTGCTGGACC
ACCACGCCGAAATCGGCGCAATAGGTCCCAAAGGGCATCGTCCCCTACAC
CTGGCTGCCAAGGAGGAGCGAGCCGTCATTGTTGAGCTTCTGATAGGGCG
AAAAGCGGATTTGCACGCCAAGGATGACAGGGGGCGAGACGCTCTACACT
ACACCGACAGCCGGAGGTGCAAGGAAAGGATTCGGGAGGCGCAGCGGAGG
GAGGAGCGGGCTGCCGAGGCGCAGAGGCAGCTGGCTCTCCAGAAGAAGAG
GGAGGAGGAGAACCGGCGAAGGGAGCAGGAGCTGCTGGACAGGGTCGACC
TGCGGGCGAGAGCACGGCGATAGCTTCTGATAGGGCGAAAAGCGGATTTG
CACGCCAAGGATGACAGGGGGCGAGACGCTCTACACTACACCGACAGCCG
GAGGTGCAAGGAAAGGATTCGGGAGGCGCAGCGGAGGGAGGAGCGGGCTG
CCGAGGCGCAGAGGCAGCTGGCTCTCCAGAAGAAGAGGGAGGAGGAGAAC
CGGCGAAGGGAGCAGGAGCTGCTGGACAGGGTCGACCTGCGGGCGAGAGC
ACGGCGATAG back to top
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