mRNA_E-siliculosus-1a_F_contig12111.1349.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12111.1349.1
Unique NamemRNA_E-siliculosus-1a_F_contig12111.1349.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12111.1349.1 vs. uniprot
Match: A0A6H5K4H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H2_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 7.430e-8
Identity = 28/49 (57.14%), Postives = 29/49 (59.18%), Query Frame = 1 
Query:    1 FGPGFNEPLAGVVSSWPSLRKLVLGNTFNQPIAQVSWPSSLQELSLGEG 147
            FGPGFNEPLAGVV+SWPSLRK                    QELSLGEG
Sbjct:  316 FGPGFNEPLAGVVASWPSLRKXXXXXXXXXXXXXXXXXXXXQELSLGEG 364
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BLAST of mRNA_E-siliculosus-1a_F_contig12111.1349.1 vs. uniprot
Match: A0A6H5L2G4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2G4_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 5.970e-6
Identity = 25/47 (53.19%), Postives = 27/47 (57.45%), Query Frame = 1 
Query:    1 FGPGFNEPLAGVVSSWPSLRKLVLGNTFNQPIAQVSWPSSLQELSLG 141
            FGPGFNEPLAGVVSSWPSLRK                 +SL+ L  G
Sbjct:  322 FGPGFNEPLAGVVSSWPSLRKXXXXXXXXXXXXXXXXXASLRALEFG 368
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12111.1349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K4H2_9PHAE7.430e-857.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2G4_9PHAE5.970e-653.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12111contigE-siliculosus-1a_F_contig12111:1548..1703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size156
Model size156
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927731.344286-CDS-E-siliculosus-1a_F_contig12111:1547..17031622927731.344286-CDS-E-siliculosus-1a_F_contig12111:1547..1703Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12111 1548..1703 -
1696318658.2801151-CDS-E-siliculosus-1a_F_contig12111:1547..17031696318658.2801151-CDS-E-siliculosus-1a_F_contig12111:1547..1703Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12111 1548..1703 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12111.1349.1prot_E-siliculosus-1a_F_contig12111.1349.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12111 1548..1703 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12111.1349.1

>prot_E-siliculosus-1a_F_contig12111.1349.1 ID=prot_E-siliculosus-1a_F_contig12111.1349.1|Name=mRNA_E-siliculosus-1a_F_contig12111.1349.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=52bp
FGPGFNEPLAGVVSSWPSLRKLVLGNTFNQPIAQVSWPSSLQELSLGEGF
HN
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mRNA from alignment at E-siliculosus-1a_F_contig12111:1548..1703-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12111.1349.1 ID=mRNA_E-siliculosus-1a_F_contig12111.1349.1|Name=mRNA_E-siliculosus-1a_F_contig12111.1349.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=156bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12111:1548..1703- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTTGGGCCTGGCTTCAACGAGCCTCTTGCCGGTGTGGTGTCTTCCTGGCC
GTCGCTGCGGAAACTCGTCCTCGGGAACACTTTCAACCAACCAATCGCCC
AAGTATCGTGGCCATCCTCATTGCAGGAGCTCTCCCTGGGCGAAGGATTC
CACAAT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12111:1548..1703-

>mRNA_E-siliculosus-1a_F_contig12111.1349.1 ID=mRNA_E-siliculosus-1a_F_contig12111.1349.1|Name=mRNA_E-siliculosus-1a_F_contig12111.1349.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=312bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12111:1548..1703- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTTGGGCCTGGCTTCAACGAGCCTCTTGCCGGTGTGGTGTCTTCCTGGCC
GTCGCTGCGGAAACTCGTCCTCGGGAACACTTTCAACCAACCAATCGCCC
AAGTATCGTGGCCATCCTCATTGCAGGAGCTCTCCCTGGGCGAAGGATTC
CACAATTTTGGGCCTGGCTTCAACGAGCCTCTTGCCGGTGTGGTGTCTTC
CTGGCCGTCGCTGCGGAAACTCGTCCTCGGGAACACTTTCAACCAACCAA
TCGCCCAAGTATCGTGGCCATCCTCATTGCAGGAGCTCTCCCTGGGCGAA
GGATTCCACAAT
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