mRNA_E-siliculosus-1a_F_contig1211.1347.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1211.1347.1
Unique NamemRNA_E-siliculosus-1a_F_contig1211.1347.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1211.1347.1 vs. uniprot
Match: D7FTS3_ECTSI (CAB/ELIP/HLIP superfamily of protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTS3_ECTSI)

HSP 1 Score: 437 bits (1123), Expect = 1.030e-147
Identity = 226/228 (99.12%), Postives = 228/228 (100.00%), Query Frame = 1 
Query:    1 MKAVFALCAAMVAGAQAFVPTTTAFSGARVASPSSASAATTTPRMAAGSFSVFDNAQAEFAAEFPEYSKYGWGPTAKAERWNGRHAMFGWAAIIATGYCQAHNLIPDANVALDPKVWGTLAYTTGTETITNERAIIMMGHVHALAVSVCATVAPLSFQDKLFLDVDAGEKDAPAPGLIPSFVPGLTPEAEIFNGRMAMMGLVVTATTALTTGQSFLEVVNAGLGGLLM 684
            MKAVFALCAAMVAGAQAFVPTTTAFSGARVASP+SASAATTTPRMAAGSFSVFDNAQAEFAAEFPEYSKYGWGPTAKAERWNGRHAMFGWAAIIATGYCQAHNLIPDA+VALDPKVWGTLAYTTGTETITNERAIIMMGHVHALAVSVCATVAPLSFQDKLFLDVDAGEKDAPAPGLIPSFVPGLTPEAEIFNGRMAMMGLVVTATTALTTGQSFLEVVNAGLGGLLM
Sbjct:    1 MKAVFALCAAMVAGAQAFVPTTTAFSGARVASPASASAATTTPRMAAGSFSVFDNAQAEFAAEFPEYSKYGWGPTAKAERWNGRHAMFGWAAIIATGYCQAHNLIPDADVALDPKVWGTLAYTTGTETITNERAIIMMGHVHALAVSVCATVAPLSFQDKLFLDVDAGEKDAPAPGLIPSFVPGLTPEAEIFNGRMAMMGLVVTATTALTTGQSFLEVVNAGLGGLLM 228
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BLAST of mRNA_E-siliculosus-1a_F_contig1211.1347.1 vs. uniprot
Match: A0A6U4CWQ9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CWQ9_9STRA)

HSP 1 Score: 227 bits (578), Expect = 3.120e-66
Identity = 111/178 (62.36%), Postives = 136/178 (76.40%), Query Frame = 1 
Query:  151 SVFDNAQAEFAAEFPEYSKYGWGPTAKAERWNGRHAMFGWAAIIATGYCQAHNLIPDANVALDPKVWGTLAYTTGTETITNERAIIMMGHVHALAVSVCATVAPLSFQDKLFLDVDAGEKDAPAPGLIPSFVPGLTPEAEIFNGRMAMMGLVVTATTALTTGQSFLEVVNAGLGGLLM 684
            SVFD+A  +F  +FPE+ + GWGPT KAERWNGRHAMFGW AI+ATGY QAH LIPD +  LD K WGTLA   G  TITN RA+I++GH+HAL +SVCAT+APLSFQDKLFL+   GE D PA GLIP+   GLT  AE++NGR+AM+GL+V    ++ +G   L VV+AGLGGLL+
Sbjct:   60 SVFDDATTDFGKQFPEFYQLGWGPTTKAERWNGRHAMFGWVAIVATGYAQAHGLIPDFDKPLDLKEWGTLAIIAGKTTITNGRAVILIGHIHALMMSVCATIAPLSFQDKLFLE--EGEADEPAAGLIPAMDTGLTKSAELWNGRVAMLGLIVLVACSVGSGTPVLNVVDAGLGGLLL 235
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BLAST of mRNA_E-siliculosus-1a_F_contig1211.1347.1 vs. uniprot
Match: A0A6U4CP98_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CP98_9STRA)

HSP 1 Score: 227 bits (578), Expect = 1.600e-65
Identity = 111/178 (62.36%), Postives = 136/178 (76.40%), Query Frame = 1 
Query:  151 SVFDNAQAEFAAEFPEYSKYGWGPTAKAERWNGRHAMFGWAAIIATGYCQAHNLIPDANVALDPKVWGTLAYTTGTETITNERAIIMMGHVHALAVSVCATVAPLSFQDKLFLDVDAGEKDAPAPGLIPSFVPGLTPEAEIFNGRMAMMGLVVTATTALTTGQSFLEVVNAGLGGLLM 684
            SVFD+A  +F  +FPE+ + GWGPT KAERWNGRHAMFGW AI+ATGY QAH LIPD +  LD K WGTLA   G  TITN RA+I++GH+HAL +SVCAT+APLSFQDKLFL+   GE D PA GLIP+   GLT  AE++NGR+AM+GL+V    ++ +G   L VV+AGLGGLL+
Sbjct:  112 SVFDDATTDFGKQFPEFYQLGWGPTTKAERWNGRHAMFGWVAIVATGYAQAHGLIPDFDKPLDLKEWGTLAIIAGKTTITNGRAVILIGHIHALMMSVCATIAPLSFQDKLFLE--EGEADEPAAGLIPAMDTGLTKSAELWNGRVAMLGLIVLVACSVGSGTPVLNVVDAGLGGLLL 287
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BLAST of mRNA_E-siliculosus-1a_F_contig1211.1347.1 vs. uniprot
Match: A0A7S2MHN0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MHN0_9STRA)

HSP 1 Score: 214 bits (545), Expect = 1.240e-61
Identity = 109/177 (61.58%), Postives = 132/177 (74.58%), Query Frame = 1 
Query:  151 SVFDNAQAEFAAEFPEYSKYGWGPTAKAERWNGRHAMFGWAAIIATGYCQAHNLIPDANVALDPKVWGTLAYTTGTETITNERAIIMMGHVHALAVSVCATVAPLSFQDKLFLDVDAGEKDAPAPGLIPSFVPGLTPEAEIFNGRMAMMGLVVTATTALTTGQSFLEVVNAGLGGLL 681
            SVF +A  EFA ++P  +KYGWGP+ KAERWNGRHAMFGW AI+ TGYCQAH+LIPDA+  LD K WGTLA  +G  TI+NERAII++ HVHAL VSVCAT+AP+   D L L+   GE D PA G+ P F  GLT  AE++NGRMAMMGL+  ++ +L TG SFL  V+  LGGLL
Sbjct:   47 SVFTDATTEFANDYPMMAKYGWGPSTKAERWNGRHAMFGWFAIVCTGYCQAHHLIPDADKLLDLKEWGTLATISGKATISNERAIILIAHVHALMVSVCATMAPM--MDTLLLE--PGEADEPAAGVFPPFETGLTSAAELWNGRMAMMGLITASSYSLMTGTSFLNTVDLWLGGLL 219
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BLAST of mRNA_E-siliculosus-1a_F_contig1211.1347.1 vs. uniprot
Match: A0A835Z6M5_9STRA (CAB/ELIP/HLIP superfamily of protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6M5_9STRA)

HSP 1 Score: 212 bits (540), Expect = 6.190e-61
Identity = 116/224 (51.79%), Postives = 149/224 (66.52%), Query Frame = 1 
Query:   10 VFALCAAMVAGAQAFVPTTTAFSGARVASPSSASAATTTPRMAAGSFSVFDNAQAEFAAEFPEYSKYGWGPTAKAERWNGRHAMFGWAAIIATGYCQAHNLIPDANVALDPKVWGTLAYTTGTETITNERAIIMMGHVHALAVSVCATVAPLSFQDKLFLDVDAGEKDAPAPGLIPSFVPGLTPEAEIFNGRMAMMGLVVTATTALTTGQSFLEVVNAGLGGLL 681
            VFAL A ++A   AF+P T A S    A       A   P  ++   SVF +A   F+ ++P++ K GWGPT KAERWNGRHAMFGW  I+ATGY +AH LIPD  VAL+ K WGTL+   G +TI+NERA++++ +VHAL +S+CA  APLSFQD L   +  G+KD PA GLIP+ VPGLT EAE+ NGR+AM+GLV+    +L TG  FL  V+  LG  L
Sbjct:    3 VFALFALLLASVSAFMPATPASSFVAKAG------AAVKPSASSMQMSVFTDATEAFSKDYPDFYKAGWGPTTKAERWNGRHAMFGWVLIVATGYAKAHGLIPDPEVALNLKEWGTLSILAGPQTISNERAVVLIANVHALFMSLCAAFAPLSFQDPLL--IPKGQKDEPAAGLIPAIVPGLTKEAELLNGRLAMLGLVLVMGHSLATGTPFLNSVDLFLGNRL 218
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BLAST of mRNA_E-siliculosus-1a_F_contig1211.1347.1 vs. uniprot
Match: A0A7S2W341_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W341_9STRA)

HSP 1 Score: 200 bits (509), Expect = 2.160e-56
Identity = 100/177 (56.50%), Postives = 126/177 (71.19%), Query Frame = 1 
Query:  154 VFDNAQAEFAAEFPEYSKYGWGPTAKAERWNGRHAMFGWAAIIATGYCQAHNLIPDANVALDPKVWGTLAYTTGTETITNERAIIMMGHVHALAVSVCATVAPLSFQDKLFLDVDAGEKDAPAPGLIPSFVPGLTPEAEIFNGRMAMMGLVVTATTALTTGQSFLEVVNAGLGGLLM 684
            VFDNA A+F  ++PE+S  GWGP+ KAERWNGRHAMFGW  II TGY QAH LIP+ +  LD K WGTLA  +GT+TI+NERAII++ +VHA  V + A  APLS+ D L L+   GE D    G+ P F  G+T  AE++NGRMAMMG+V T + +L TG  F++ VN  LGGLL+
Sbjct:   48 VFDNAVAKFKEDYPEFSAAGWGPSTKAERWNGRHAMFGWFFIICTGYAQAHGLIPEGDKLLDLKEWGTLATISGTKTISNERAIILIANVHAFMVGILAAFAPLSYMDTLLLE--DGEADEEPAGVFPPFDTGITSAAELWNGRMAMMGIVTTTSYSLLTGTPFMQTVNLWLGGLLI 222
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BLAST of mRNA_E-siliculosus-1a_F_contig1211.1347.1 vs. uniprot
Match: A0A7S1BP97_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BP97_9STRA)

HSP 1 Score: 200 bits (508), Expect = 7.180e-56
Identity = 100/176 (56.82%), Postives = 126/176 (71.59%), Query Frame = 1 
Query:  154 VFDNAQAEFAAEFPEYSKYGWGPTAKAERWNGRHAMFGWAAIIATGYCQAHNLIPDANVALDPKVWGTLAYTTGTETITNERAIIMMGHVHALAVSVCATVAPLSFQDKLFLDVDAGEKDAPAPGLIPSFVPGLTPEAEIFNGRMAMMGLVVTATTALTTGQSFLEVVNAGLGGLL 681
            VF++A  E+ AE+P+++K+GWGP+ KAERWNGRHAMFGW  I+A+ Y   HNLIP+A++ALD K WGTLA  +G  TITNERA+I++ +VHAL VS  A +AP SF D+L L    GE D    GL+P  V GLTPEAEI NGRMAMMGL+    T+       ++VVN  LGGLL
Sbjct:   78 VFEDAMGEWKAEYPKFAKFGWGPSTKAERWNGRHAMFGWFVIVASAYAHGHNLIPNADMALDLKQWGTLATISGKSTITNERAVILIANVHALFVSFLAAMAPSSFADQLLLK--EGEVDEEPYGLVPPLVTGLTPEAEIMNGRMAMMGLIALVGTSAINQMPMVDVVNEWLGGLL 251
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BLAST of mRNA_E-siliculosus-1a_F_contig1211.1347.1 vs. uniprot
Match: A0A8J6CBU4_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CBU4_DIALT)

HSP 1 Score: 197 bits (502), Expect = 2.210e-55
Identity = 106/198 (53.54%), Postives = 134/198 (67.68%), Query Frame = 1 
Query:  106 ASAATTTPRMAAGSFSVFDNAQAEFAAEFPEYSKYGWGPTAKAERWNGRHAMFGWAAIIATGYCQAHNLIPDANVALDPKVWGTLAYTTGTETITNERAIIMMGHVHALAVSVCATVAPLSFQDKLFLDVDAGEKDAPAPGLIPSFVP-----GLTPEAEIFNGRMAMMGLVVTATTALTTGQSFLEVVNAGLGGLLM 684
            A A+  + R A  + SVF+ A A F  +FPE+SK G+GPT KAERWNGRHAMFGW  I+ATGY Q+HNLIP+ +  LD   WG LA      +ITN RAII++ HVHAL VS+ ++++P  FQD L L++ A E+D  A GL   FVP     GLT  AE+ NGR+AM+GL+     +L TGQ  LEVVN GLGGLL+
Sbjct:   29 AKASAVSARAAPRAASVFEGAMANFEKDFPEFSKRGFGPTTKAERWNGRHAMFGWVVILATGYAQSHNLIPNFDAPLDLSAWGPLARQGDYSSITNGRAIILIAHVHALFVSLASSLSPFGFQDSLTLNMKAAERDEAAYGL---FVPIPGQAGLTAAAEMMNGRLAMLGLIAAVGASLATGQPLLEVVNTGLGGLLL 223
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BLAST of mRNA_E-siliculosus-1a_F_contig1211.1347.1 vs. uniprot
Match: A0A7S3Q4Z5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q4Z5_9STRA)

HSP 1 Score: 195 bits (496), Expect = 1.570e-54
Identity = 101/198 (51.01%), Postives = 129/198 (65.15%), Query Frame = 1 
Query:  100 SSASAATTTPRMAAGSFSVFDNAQAEFAAEFPEYSKYGWGPTAKAERWNGRHAMFGWAAIIATGYCQAHNLIPDANVALDPKVWGTLAYTTGTETITNERAIIMMGHVHALAVSVCATVAPLSFQDKLFLDVDAGE-----KDAPAPGLIPSFVPGLTPEAEIFNGRMAMMGLVVTATTALTTGQSFLEVVNAGLGGL 678
            S+ S  T  P ++  S  VFD A A++ AE+P+++K+GWGP+ +AE+WNGRHAMFGW  I AT Y + H LIPDA+  L+ K WGTLA  +G  TITNERAII+M +VH   V + AT+ PL F D L LD + GE     K   A G++P    GLT EAEI NGRMAMMGL+    T+   G+  L VVN  +GGL
Sbjct:   24 STLSVRTAAPVVSETSLEVFDKAMADWEAEYPQFAKWGWGPSVQAEKWNGRHAMFGWVFICATAYAKGHGLIPDADTVLNLKEWGTLATISGKNTITNERAIILMANVHCFCVGLLATICPLPFSDPLLLDPNQGEMYEKAKATKAYGVLPEMKTGLTEEAEIMNGRMAMMGLITLTATSFIEGKDMLTVVNDWVGGL 221
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BLAST of mRNA_E-siliculosus-1a_F_contig1211.1347.1 vs. uniprot
Match: A0A7S3JY58_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JY58_9STRA)

HSP 1 Score: 193 bits (490), Expect = 8.630e-54
Identity = 97/179 (54.19%), Postives = 124/179 (69.27%), Query Frame = 1 
Query:  151 SVFDNAQAEFAAEFPEYSKYGWGPTAKAERWNGRHAMFGWAAIIATGYCQAHNLIPDANVALDPKVWGTLAYTTG-TETITNERAIIMMGHVHALAVSVCATVAPLSFQDKLFLDVDAGEKDAPAPGLIPSFVPGLTPEAEIFNGRMAMMGLVVTATTALTTGQSFLEVVNAGLGGLLM 684
            S F  A  +F +++P ++ YGWG + KAERWNGRHAMFGW  II TGY Q+H LIPDA+  LD  VWGTLA  T    TITNERAII++ ++HAL VS+CA  AP   QDKL L+   GE D    G+IP F PGL P+AE+ NGR+AM+G+   +  +L  G  F++VVN+ LGGLL+
Sbjct:   37 SPFTEATDKFKSDYPSFAAYGWGVSPKAERWNGRHAMFGWFFIICTGYAQSHGLIPDADKTLDLSVWGTLAQITPRVSTITNERAIILVANIHALMVSLCAAFAPFPTQDKLLLE--PGEADEDPAGIIPKFTPGLNPDAEMINGRLAMLGITTVSAYSLIYGVPFMDVVNSMLGGLLL 213
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1211.1347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTS3_ECTSI1.030e-14799.12CAB/ELIP/HLIP superfamily of protein n=2 Tax=Ectoc... [more]
A0A6U4CWQ9_9STRA3.120e-6662.36Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6U4CP98_9STRA1.600e-6562.36Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2MHN0_9STRA1.240e-6161.58Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835Z6M5_9STRA6.190e-6151.79CAB/ELIP/HLIP superfamily of protein n=1 Tax=Tribo... [more]
A0A7S2W341_9STRA2.160e-5656.50Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1BP97_9STRA7.180e-5656.82Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A8J6CBU4_DIALT2.210e-5553.54Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A7S3Q4Z5_9STRA1.570e-5451.01Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S3JY58_9STRA8.630e-5454.19Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1211contigE-siliculosus-1a_F_contig1211:16074..22081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size687
Model size2019
Exons3
Ec32 orthologEc-14_001030.1
Ec32 ortholog descriptionCAB/ELIP/HLIP superfamily of protein
Hectar predicted targeting categorychloroplast
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2C7IH@1,2S16Q@2759
EggNOG free text desc.Chlorophyll A-B binding protein
Seed eggNOG ortholog2880.D7FTS3
Seed ortholog evalue1.9e-121
Seed ortholog score441.8
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1211.1347.1prot_E-siliculosus-1a_F_contig1211.1347.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1211 16074..20749 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927731.1695788-CDS-E-siliculosus-1a_F_contig1211:16073..161211622927731.1695788-CDS-E-siliculosus-1a_F_contig1211:16073..16121Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1211 16074..16121 +
1696318658.241872-CDS-E-siliculosus-1a_F_contig1211:16073..161211696318658.241872-CDS-E-siliculosus-1a_F_contig1211:16073..16121Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1211 16074..16121 +
1622927731.194571-CDS-E-siliculosus-1a_F_contig1211:19247..195441622927731.194571-CDS-E-siliculosus-1a_F_contig1211:19247..19544Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1211 19248..19544 +
1696318658.2507036-CDS-E-siliculosus-1a_F_contig1211:19247..195441696318658.2507036-CDS-E-siliculosus-1a_F_contig1211:19247..19544Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1211 19248..19544 +
1622927731.2246315-CDS-E-siliculosus-1a_F_contig1211:20407..207491622927731.2246315-CDS-E-siliculosus-1a_F_contig1211:20407..20749Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1211 20408..20749 +
1696318658.2578588-CDS-E-siliculosus-1a_F_contig1211:20407..207491696318658.2578588-CDS-E-siliculosus-1a_F_contig1211:20407..20749Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1211 20408..20749 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927731.247069-UTR-E-siliculosus-1a_F_contig1211:20749..220811622927731.247069-UTR-E-siliculosus-1a_F_contig1211:20749..22081Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1211 20750..22081 +
1696318658.2651126-UTR-E-siliculosus-1a_F_contig1211:20749..220811696318658.2651126-UTR-E-siliculosus-1a_F_contig1211:20749..22081Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1211 20750..22081 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1211.1347.1

>prot_E-siliculosus-1a_F_contig1211.1347.1 ID=prot_E-siliculosus-1a_F_contig1211.1347.1|Name=mRNA_E-siliculosus-1a_F_contig1211.1347.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=229bp
MKAVFALCAAMVAGAQAFVPTTTAFSGARVASPSSASAATTTPRMAAGSF
SVFDNAQAEFAAEFPEYSKYGWGPTAKAERWNGRHAMFGWAAIIATGYCQ
AHNLIPDANVALDPKVWGTLAYTTGTETITNERAIIMMGHVHALAVSVCA
TVAPLSFQDKLFLDVDAGEKDAPAPGLIPSFVPGLTPEAEIFNGRMAMMG
LVVTATTALTTGQSFLEVVNAGLGGLLM*
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mRNA from alignment at E-siliculosus-1a_F_contig1211:16074..22081+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1211.1347.1 ID=mRNA_E-siliculosus-1a_F_contig1211.1347.1|Name=mRNA_E-siliculosus-1a_F_contig1211.1347.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6008bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1211:16074..22081+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAGGCTGTCTTTGCTCTGTGCGCGGCGATGGTGGCGGGCGCCCAGGT
GCGTTGTAAGCTTTCGATTTTCATGCTCCGTATGTCATGTGCGTGCGTGT
GGGGTGAAGTTTTGTTTTCATGATAGGTACGTGTGTCTCGGCTGCCCGCC
GGGCTGACACCCAACCAGGGTTGGCATGATGGGGCTCACCGGACAACCGC
GTGTGCAAACTTCTCCTGTGCCTCGCTTCCGTGTCGATTGTTGCGTCTGG
GATCGCGTCCGAAACGGAGCGAGTTGTCAGCTCGGCACATTTCGTTGAGT
TTTTGACCCCTCTCCTTTTGTCTTGGAAAAATAAGGCAACAAGGGTGCAA
GCATGGACTCGAACGGTTTGATGTGTGTTGCGGCGAAGGAGAGGGCCGCT
GGGGTGTTTGGCCGTCTCATCGTAGACACAATTGTACACCTTCAGCTTCG
GTACAGCTTCAGACCCACGGCTGCCCCTACGACAAGAAAAACAACGCATG
CAAGAACCACACAGCAAAGCTGTGGTCCCACCCCAATGTGCACTGCCGAC
CAAGCTTGATGTGTCCGCATGCATCTGCTGTTGCTGTCGTGAAACCTACC
CAGTGACTCCGTCCTCGGTTGGTACATGAGTACCACGTTTGTTATGGTAT
CATTTGAACCCTGCCTAGAAGGTGTCATATTCCAATCGCTCAGCGATAGC
TCGAACTGCACAGCGGTGAATTCCAGTTTGGCGTGTTGCGTGACATGCTA
CATGTACCACCCCGGGTAAATTCCTATGTTGTTCAACGTGCCCAGTCCAC
TCATGGTAGATAACTGGACCTCGGATCGGCGGGGGCCTGTACCAACGACG
CATGATTATCCGCCGATGTCATGTTCGTTCCCTGAAAAAGCAAGGCAACG
CTTGCCTACATGCACCCATACTGCCGGCCCACGGGCTGCGCTTCACAGCT
GTAGCTCATGGGTACATATTGCATACGTCAATTCGATGCCAAATATGTGG
GCCGGCTGGCGTCGCTGATCCTAGTGTAAAGGCTTTCGTTCAGGCTCAGA
GTGACCAGTACCCAGCGGGGGTTTTCTCGCCACTTGCTGCTGTAAAGACT
TCCAAGACATGCCTTCGATTGGGTATTATCTCGAACGGGTAGTCTTGCCT
AACTCTGTGTTGTGTGTGATTTGCCTCTGAATGTTCGCTGAGAGCTGTTC
AGATTCACCCCTTTTGGCCAGTACTTCGAAGTATCAGCTGTTACCTCAAA
ACCTTTGAAATGTCAACCGCGCAGTAGGTGGGCGTGCGCGTGAAGCAGGT
GCTTGCGTGTGAACGCATGCGAAACCCGACTTGGTTGTTGACAGCGGGAA
AGCGTTTGCTCAACCGATGATTACGGCTGACGACATGCATGGAACTGACA
ACTATTCTTCGTGGCCCCGGATCGTATCATACCATAGCTCCTCTCACTGG
AGAAAAGCCAAAGGCGGTGCGATAAGGCAGAATCCCAGTAGACAGCAGTA
TGCATGCCGTTGTTTGTATGCCAAAAGATTGCATGTTCTAGTACATTTTT
TTTTTCTTCTGTTTTGGGTCGTTGACGTTTGCTGGGCTGTTCGAGTCAAA
AACACGTCAGTTTGCGTGAGCTTGGGAAACGTCACACTGCAGCTGGCAGC
TAGCTAGCTGTGGGATGGTCCTGCTGCCTGCTTTATTTTCGTCTTGCATC
ACCCGCTCATCACACTGCTCTCATCACACTCCGGAAGGATCAATTTGCAC
TTTTATTGAAGCGTTACAAATGGCATGTACGTTTTTGTGGGTGGTTCTAG
AGTTGGTTGGAGGCGGTCCGTCCCATGACCCCTCCTCTGATGCTCAACAG
CTTGTAGGGGGCGGGGGCGTTGTGCATTTTCGGAAAGCACACACTGTGTG
TGCACGGGGTTCGGGAGAAACAAACGATAAAACTTGACTTCGATCTCCTT
GATGGAGAGTTTCATGAGGGCTCGCACACTCACCAACGTTATGTATTTGG
AGATAATGTTGCGATGTTAATCGAGATTTTCTATAAAACACAGAGATTGT
GCACAGCTGTACCGCTGCCGTCAGATTACGAGCTGGCAGCAGCAGTTTTG
AAGTTCGTATTGTACTACTCAACACAAGGAAATTGGGAATTCCCCACGAG
CGCTGATAGCACCTCCAAAGCAGGTTCGCGTTGTACGGGCGGCATCCGCC
CCCAGACATAACACGGCGGTTGTCCGCCGCTCATTGGATTTGCTGCCCTG
CGCTATATGCGGACTAGATGCCCCCTTCTCCCCCTGTGTGAGGCCTGTCC
GTTGGTGTTTGCTTGAGGTGTCGCATGTAAATGTCTCCATCGCGACCTTT
CGGCCAAAGACATTTTGCAGCAGCGACTGCTTTGTGTTTGTCTGCTGCAT
GAAACGTCCGGTACTTGCTCTTAAGACAACAGCATCACCGTCTACCCTGA
AGTCTCTTTCGAGCCACCTCATAAGTTCGTTCGATGAGAAAAGAACATGA
ATGCAACACTGCCAAAGGTCGAATGTTTTTTGTGTCGTTTGTCGTCCAGT
TTGGGCGTCAGCCTTGAAACCGTTTGGTTTACCATGGGTTGTTGTGGATG
CACCAGCCGCAGTCTGGCTCTGTCTTGCTCCCGAATTCGCACGAAAAATT
TTTCATTGTTCTTCACTTGAGAACGTTAGCCTACGAATCCAGACCGAGAG
TTCAGCAAGTACAATGAGGCTACTGCTGTCATCATTTCGCTTGATCGCAC
TGAGAGTTATTACCTGTCGTTCTTGACCTGGGAGCCCGAGTTTGGGTGCG
CATTTCCAGTTTATGACCCAGCTTCACAAAAATGAAATCTTGTCGTTCCT
TACACAACAGTGCTTGCCTCGGTGTTATCGCGAGAAGGACCCAGCCGTGT
TGTTTGTATGGTTGGGGTTTGGCCCGCCAGCGGTAACAAGTCGTTCACTC
TCGATGTGGACTTGTGCTTTGTGCGCACGAACCTGGAAGCACGATTTGCA
AACAACCTCGACAGGATCCTCACACTCCGCATGCCCATCGTGTCTGATTG
TGTGGCCCCATTCCCTCCACTCACGTGTCTTGAAAACTGCATAAGCTGAC
CCGTCCACTGCGCGCTCCCCCGTCTCTCTCTCTCTCTCTTTCTCTCTCTC
TCTCTCTCCCGGAACACGAAACAGGCGTTCGTGCCCACCACGACCGCCTT
CAGCGGAGCCCGCGTGGCCTCGCCCTCCTCCGCGTCCGCCGCCACCACCA
CCCCTCGCATGGCCGCGGGTAGCTTCAGCGTGTTCGACAACGCGCAGGCG
GAGTTCGCGGCGGAGTTCCCGGAGTACTCCAAGTACGGCTGGGGCCCCAC
CGCTAAGGCCGAGCGGTGGAACGGGCGCCACGCCATGTTCGGGTGGGCGG
CGATCATCGCGACCGGCTACTGCCAGGCGCACAACCTCATCCCCGACGCG
AATGTAGCGCTGGACCCCAAGGTGGGCACTCGCCGTGTTTTGGCTGGTTG
TTGCCGGCGGTTATGTTTTCTTGGCGCTGCGGATGTGCGCAAGGTTGTCC
CCCCCCCCCCCCCCCCCGCCCGGGGGTCGTTGCCGGGCCCTGCCGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGTGGGGCGCCAGGGNNNNNNNNNNTTGT
TGTTGTGTGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGT
GGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGTGCGTGTTGGGCAAGCTGAATGTACTGCAATATGT
GGTTGGTTGATGGGGCGGTAGGCGGAGCTAGAATTGTCCCTTTAACCATT
GCTTGAATTGTGGGGGGCGGCCGGGGGGGGGGCTAGGGCTATAGCCGTGC
CTGGATGTGTCTGTGCTCACTCCCGCACAGGTTTGGGTGTTGCGTCGCCG
TGCAGAGTATGTTAGTTGGCCACATCTCGATATCGTCTCCCCAAAACCAA
AAACATTCCCCAAACCAAGAACAATTAATTAATTAAATAAAGACACCCCA
TATAATTGTATGCAACGTTTGAGCACCCGTCCCCGGAACTCCTGCCGACA
ACAATATACGGGAAGGCACATCAAGCGTTGTATAATTCTCGTGTGGTTAA
GAAATGAATAATAGAACGTGTTTTTCAGATGTCGTGCCTAGCCCTGACCT
CGGACTTGATCCTTGGCTCTTAATTATGTCGTAGTCATGATCTCGGGCGA
GCTACACCAACCTTCGCTGGACAAACCCTCACGCCCATCCCTTGCATTGG
ACGCTGGACCCCCGCTGCGTGTGACACATGGCAGGTGTGGGGAACCCTTG
CCTACACCACGGGCACCGAGACCATCACCAACGAGAGGGCCATCATCATG
ATGGGGCACGTTCACGCGCTGGCGGTGTCCGTGTGCGCGACGGTAGCGCC
GCTGTCCTTCCAGGACAAGCTCTTCCTTGACGTGGACGCCGGCGAGAAGG
ACGCCCCGGCACCGGGACTCATCCCGTCGTTCGTGCCCGGCCTTACCCCC
GAGGCCGAGATCTTCAACGGCCGCATGGCGATGATGGGCCTCGTGGTGAC
GGCGACCACCGCGCTCACCACCGGGCAGTCTTTCCTCGAGGTCGTTAACG
CGGGCCTCGGCGGACTCCTCATGTAAACGATTTTGTTTTTGTTTTTTTTG
GGCTGATTTGAAACAAAAAAAAACGATATTTTTCACGTTTTTTTTTCTTG
TTCTTGGTCTTTGAAAAATACCTGGTAGCGTTTATCGCGCGGCTTGTGGG
GGGCGGGGCGGTGGCCGACGAAGGAGACTAACAATATGGCGATGTCGGCG
GCTGCTGCTATTGCTGCTGGTTGTTTATGTTGCAAGAAAAGAAATAGACA
TAGGAGGTGCGGGTGGAGGGAACGTTTGCCGTGGCGTGTTTGGCGTGTGA
TTGCCGGGAGGCCGATGTGTCTCGGCAACCAGTCACTTTGATGACCGATT
TACCACCTTTGGGCAAAGAACGGGGGTTCCGCGAGCGAAGTCTATGGCAT
GACCCCCCTTGGTCCCTTCTGGCGACGCGACGCTGGCGCTTGGCTGCGAG
AGGCGGTACCAGGGGTTACATATGAAGTTAGACCGACTCACCGGACTATC
GTGGAATACTCTCGACCGGTGTTGTTGCCGAGCTCTCGTTCATTTATCCA
TCAGTTGTTTGGAGAACGATGAATGGGCTTTTAGAGGCAAGGGGGGCGGG
AGTCGGGGCGGGTTTTATGGAGAACATCGAGCGTACGTCAAGTTATACAT
AGAGGCGTTTGTAGAGGCTGGGGCTGCAGCTGTCTGGCGTTGACCCCCCC
CCCCCCTCCCCCCCCCAACCATTGAATCCGTTTGTGGTTGGTTGATGCCT
GGTCTGTCCGGAGCTTGTCTCCTCGTGTCTTGTTTTGCTTCTCGCTGGCG
CTGTCTGCCGGCGGGTTCTTGACTTGGTTTGTCTCCAAAGGGTAAATCCT
GGTCTTAAGTTATTCCTGGGTCACGTTGCTGTCCTGCAGAGACAAGCTAG
ATCTGGAGAACAATAAGAAAAAAGTGACGATGGACCGAAGAAAATGGTTG
CCGGGTGCGAAAACCCTCTGCGCGATGAGGCTGGCACTGGCTGCTTTCGT
GACAAAAAAGTAACGGTGGCAATGGAGCCACTGTGTGTACATTTTAGCAT
CACACGTCATCACAAGAGGCTTTTCCCGTTCGAGGTGATTGTCTGCGAAT
TCGTTGAAGTCTTGCAGTAACAGTGAGGGTCGAGGGACACCTGCTTTGAC
ACTGGATGAAGTTCAGTTTTACTTGGGCACCCCGCACCGGAGCTTCGTTC
CTCGATCTGGAGGTCAGAGGTTACCCTGTGTAGTTGTTTTTGGCCACGCG
CTCTCGAGTTGTGTGAAGAGCGGGCCATGAAATATCCATCGCCGTGCTAC
ACCTGCTGCCGTCAATTCAAACCAGACTCTTACCATATGCGGTTTCGTGG
TGGAGGAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1211:16074..22081+

>mRNA_E-siliculosus-1a_F_contig1211.1347.1 ID=mRNA_E-siliculosus-1a_F_contig1211.1347.1|Name=mRNA_E-siliculosus-1a_F_contig1211.1347.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1374bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1211:16074..22081+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAGGCTGTCTTTGCTCTGTGCGCGGCGATGGTGGCGGGCGCCCAGAT
GAAGGCTGTCTTTGCTCTGTGCGCGGCGATGGTGGCGGGCGCCCAGGCGT
TCGTGCCCACCACGACCGCCTTCAGCGGAGCCCGCGTGGCCTCGCCCTCC
TCCGCGTCCGCCGCCACCACCACCCCTCGCATGGCCGCGGGTAGCTTCAG
CGTGTTCGACAACGCGCAGGCGGAGTTCGCGGCGGAGTTCCCGGAGTACT
CCAAGTACGGCTGGGGCCCCACCGCTAAGGCCGAGCGGTGGAACGGGCGC
CACGCCATGTTCGGGTGGGCGGCGATCATCGCGACCGGCTACTGCCAGGC
GCACAACCTCATCCCCGACGCGAATGTAGCGCTGGACCCCAAGGCGTTCG
TGCCCACCACGACCGCCTTCAGCGGAGCCCGCGTGGCCTCGCCCTCCTCC
GCGTCCGCCGCCACCACCACCCCTCGCATGGCCGCGGGTAGCTTCAGCGT
GTTCGACAACGCGCAGGCGGAGTTCGCGGCGGAGTTCCCGGAGTACTCCA
AGTACGGCTGGGGCCCCACCGCTAAGGCCGAGCGGTGGAACGGGCGCCAC
GCCATGTTCGGGTGGGCGGCGATCATCGCGACCGGCTACTGCCAGGCGCA
CAACCTCATCCCCGACGCGAATGTAGCGCTGGACCCCAAGGTGTGGGGAA
CCCTTGCCTACACCACGGGCACCGAGACCATCACCAACGAGAGGGCCATC
ATCATGATGGGGCACGTTCACGCGCTGGCGGTGTCCGTGTGCGCGACGGT
AGCGCCGCTGTCCTTCCAGGACAAGCTCTTCCTTGACGTGGACGCCGGCG
AGAAGGACGCCCCGGCACCGGGACTCATCCCGTCGTTCGTGCCCGGCCTT
ACCCCCGAGGCCGAGATCTTCAACGGCCGCATGGCGATGATGGGCCTCGT
GGTGACGGCGACCACCGCGCTCACCACCGGGCAGTCTTTCCTCGAGGTCG
TTAACGCGGGCCTCGGCGGACTCCTCATGTAAGTGTGGGGAACCCTTGCC
TACACCACGGGCACCGAGACCATCACCAACGAGAGGGCCATCATCATGAT
GGGGCACGTTCACGCGCTGGCGGTGTCCGTGTGCGCGACGGTAGCGCCGC
TGTCCTTCCAGGACAAGCTCTTCCTTGACGTGGACGCCGGCGAGAAGGAC
GCCCCGGCACCGGGACTCATCCCGTCGTTCGTGCCCGGCCTTACCCCCGA
GGCCGAGATCTTCAACGGCCGCATGGCGATGATGGGCCTCGTGGTGACGG
CGACCACCGCGCTCACCACCGGGCAGTCTTTCCTCGAGGTCGTTAACGCG
GGCCTCGGCGGACTCCTCATGTAA
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