mRNA_E-siliculosus-1a_F_contig12056.1317.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig12056.1317.1 vs. uniprot
Match: D1J6Z8_ECTSI (Uncharacterized protein ycf33 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J6Z8_ECTSI) HSP 1 Score: 121 bits (303), Expect = 7.330e-35 Identity = 63/64 (98.44%), Postives = 63/64 (98.44%), Query Frame = 1
Query: 1 MVFWDNLLRYPRFFVSSMIGLILVLINPLIVVLKKFDDKKLIYIVFISGLIALFCILKEMLNLE 192
MVFWDNLLRYPRFFVSSMIGLILVLINPLI VLKKFDDKKLIYIVFISGLIALFCILKEMLNLE
Sbjct: 1 MVFWDNLLRYPRFFVSSMIGLILVLINPLIAVLKKFDDKKLIYIVFISGLIALFCILKEMLNLE 64
BLAST of mRNA_E-siliculosus-1a_F_contig12056.1317.1 vs. uniprot
Match: A0A344PFF7_9PHAE (Uncharacterized protein ycf33 n=3 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A344PFF7_9PHAE) HSP 1 Score: 106 bits (264), Expect = 6.580e-29 Identity = 50/64 (78.12%), Postives = 59/64 (92.19%), Query Frame = 1
Query: 1 MVFWDNLLRYPRFFVSSMIGLILVLINPLIVVLKKFDDKKLIYIVFISGLIALFCILKEMLNLE 192
M+FWDNLLRYPRFF+SSMIGLIL+LINP++V+LKKFDDKK+IYI FIS ++ LFCILK MLN E
Sbjct: 1 MIFWDNLLRYPRFFLSSMIGLILILINPIVVILKKFDDKKIIYIFFISVVVTLFCILKAMLNFE 64
BLAST of mRNA_E-siliculosus-1a_F_contig12056.1317.1 vs. uniprot
Match: A0A5A4MNY1_9PHAE (Uncharacterized protein ycf33 n=1 Tax=Hapterophycus canaliculatus TaxID=2567908 RepID=A0A5A4MNY1_9PHAE) HSP 1 Score: 104 bits (260), Expect = 2.680e-28 Identity = 49/64 (76.56%), Postives = 59/64 (92.19%), Query Frame = 1
Query: 1 MVFWDNLLRYPRFFVSSMIGLILVLINPLIVVLKKFDDKKLIYIVFISGLIALFCILKEMLNLE 192
MVFWDN+LRYPRFF+SSMIGLILVLINP++V+LKKFDDKK+IY+ FI L++LFCILK MLN +
Sbjct: 1 MVFWDNILRYPRFFLSSMIGLILVLINPIVVILKKFDDKKIIYVFFIGVLVSLFCILKAMLNFD 64
BLAST of mRNA_E-siliculosus-1a_F_contig12056.1317.1 vs. uniprot
Match: A0A1I9LW10_9PHAE (Uncharacterized protein ycf33 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW10_9PHAE) HSP 1 Score: 102 bits (254), Expect = 2.210e-27 Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = 1
Query: 1 MVFWDNLLRYPRFFVSSMIGLILVLINPLIVVLKKFDDKKLIYIVFISGLIALFCILKEMLNLE 192
M+FWDNLLRYPRFF+SSM+GLILVLINP+I+ LKKFDDKK+IYI LI LFCILKEMLN E
Sbjct: 1 MIFWDNLLRYPRFFISSMLGLILVLINPMIIWLKKFDDKKIIYIXXXXXLITLFCILKEMLNFE 64
BLAST of mRNA_E-siliculosus-1a_F_contig12056.1317.1 vs. uniprot
Match: A0A6B7F270_9PHAE (Uncharacterized protein ycf33 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7F270_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 8.680e-25 Identity = 47/64 (73.44%), Postives = 54/64 (84.38%), Query Frame = 1
Query: 1 MVFWDNLLRYPRFFVSSMIGLILVLINPLIVVLKKFDDKKLIYIVFISGLIALFCILKEMLNLE 192
MVFWDNLLRYPRFF+SSMIGLILV+INP+I KKF+DKK+IY+ LI LFCILKEMLN +
Sbjct: 1 MVFWDNLLRYPRFFISSMIGLILVVINPIINQFKKFNDKKIIYLFLFISLITLFCILKEMLNFD 64
BLAST of mRNA_E-siliculosus-1a_F_contig12056.1317.1 vs. uniprot
Match: A0A8F0JYS8_9PHAE (Uncharacterized protein ycf33 n=8 Tax=Laminariales TaxID=2886 RepID=A0A8F0JYS8_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 1.230e-24 Identity = 46/64 (71.88%), Postives = 56/64 (87.50%), Query Frame = 1
Query: 1 MVFWDNLLRYPRFFVSSMIGLILVLINPLIVVLKKFDDKKLIYIVFISGLIALFCILKEMLNLE 192
MVFWDNLLRYPRFF+SSMIGLIL+L+ P+I LKKF+DK++++ IS LI LFCILKEMLN+E
Sbjct: 1 MVFWDNLLRYPRFFISSMIGLILILLTPIINQLKKFNDKRIVFFFLISILITLFCILKEMLNIE 64
BLAST of mRNA_E-siliculosus-1a_F_contig12056.1317.1 vs. uniprot
Match: A0A0S0GM32_COSCS (Uncharacterized protein ycf33 n=12 Tax=Laminariales TaxID=2886 RepID=A0A0S0GM32_COSCS) HSP 1 Score: 90.5 bits (223), Expect = 1.190e-22 Identity = 43/64 (67.19%), Postives = 55/64 (85.94%), Query Frame = 1
Query: 1 MVFWDNLLRYPRFFVSSMIGLILVLINPLIVVLKKFDDKKLIYIVFISGLIALFCILKEMLNLE 192
MVFWDNLLRYPRFF+SSM+GL+L+L+ P++ LKKF+DKK+I+ IS LI LFCILK ML++E
Sbjct: 1 MVFWDNLLRYPRFFISSMLGLVLILLTPILEQLKKFNDKKIIFFFVISILITLFCILKGMLSME 64
BLAST of mRNA_E-siliculosus-1a_F_contig12056.1317.1 vs. uniprot
Match: A0A0R6M2R2_UNDPI (Uncharacterized protein ycf33 n=4 Tax=Laminariales TaxID=2886 RepID=A0A0R6M2R2_UNDPI) HSP 1 Score: 90.1 bits (222), Expect = 1.690e-22 Identity = 46/64 (71.88%), Postives = 53/64 (82.81%), Query Frame = 1
Query: 1 MVFWDNLLRYPRFFVSSMIGLILVLINPLIVVLKKFDDKKLIYIVFISGLIALFCILKEMLNLE 192
MVFWDNLLRYPRFF+SSM+GLIL+L+ P+I LKKF DKK+IY IS LI LF ILKEML+ E
Sbjct: 1 MVFWDNLLRYPRFFISSMLGLILILLTPIIEQLKKFKDKKIIYFFLISILITLFYILKEMLSTE 64
BLAST of mRNA_E-siliculosus-1a_F_contig12056.1317.1 vs. uniprot
Match: A0A8F0F926_9PHAE (Uncharacterized protein ycf33 n=2 Tax=Laminariaceae TaxID=33636 RepID=A0A8F0F926_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 4.840e-22 Identity = 42/64 (65.62%), Postives = 54/64 (84.38%), Query Frame = 1
Query: 1 MVFWDNLLRYPRFFVSSMIGLILVLINPLIVVLKKFDDKKLIYIVFISGLIALFCILKEMLNLE 192
M+FWDNLLRYPRFF+SSM+GLIL+L+ P+I KKF+DKK+I+ IS LI LFCILK ML+++
Sbjct: 1 MIFWDNLLRYPRFFISSMLGLILILLTPIIEQFKKFNDKKIIFFFLISILITLFCILKGMLSID 64
BLAST of mRNA_E-siliculosus-1a_F_contig12056.1317.1 vs. uniprot
Match: A0A8F0F9R8_9PHAE (Uncharacterized protein ycf33 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9R8_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 9.400e-20 Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 1
Query: 1 MVFWDNLLRYPRFFVSSMIGLILVLINPLIVVLKKFDDKKLIYIVFISGLIALFCILKEMLNLE 192
M+FWDNLLRYPRFF+SSM+GLIL+L+ P++ LKKF+D+K+ IS L LF ILK MLN+E
Sbjct: 1 MIFWDNLLRYPRFFISSMVGLILILVTPILDQLKKFNDRKIYIFFLISFLFGLFSILKGMLNVE 64 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12056.1317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig12056.1317.1 >prot_E-siliculosus-1a_F_contig12056.1317.1 ID=prot_E-siliculosus-1a_F_contig12056.1317.1|Name=mRNA_E-siliculosus-1a_F_contig12056.1317.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=65bp MVFWDNLLRYPRFFVSSMIGLILVLINPLIVVLKKFDDKKLIYIVFISGLback to top mRNA from alignment at E-siliculosus-1a_F_contig12056:10..204- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig12056.1317.1 ID=mRNA_E-siliculosus-1a_F_contig12056.1317.1|Name=mRNA_E-siliculosus-1a_F_contig12056.1317.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=195bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12056:10..204- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12056:10..204- >mRNA_E-siliculosus-1a_F_contig12056.1317.1 ID=mRNA_E-siliculosus-1a_F_contig12056.1317.1|Name=mRNA_E-siliculosus-1a_F_contig12056.1317.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=390bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12056:10..204- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |