mRNA_E-siliculosus-1a_F_contig1205.1314.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1205.1314.1
Unique NamemRNA_E-siliculosus-1a_F_contig1205.1314.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1205.1314.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.160e-22
Identity = 52/79 (65.82%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:  103 SSDGWGPAVASGDATKLTELVLVWSGSKPERALSILRSCISLMEKEVACSAPASSLLHWPHTTPGPTRNSCLNAFTVAL 339
            S D WG AVA+GDATKL ELVLVWSGS+PE ALS+LR C+ L+E+E A S P SS L  P  T GPTR+SCL   TVAL
Sbjct:   66 SPDKWGLAVATGDATKLAELVLVWSGSRPEAALSLLRECVLLLEEEAAFSVPDSSPLQSPSCTLGPTRSSCLKTLTVAL 144
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1205.1314.1 vs. uniprot
Match: D7FUL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 4.630e-21
Identity = 52/74 (70.27%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:  118 GPAVASGDATKLTELVLVWSGSKPERALSILRSCISLMEKEVACSAPASSLLHWPHTTPGPTRNSCLNAFTVAL 339
            G AVASG ATKL ELVLVWS SKPERALSI R+C+SL+EKE A SA  SS L    T PGP R+SCLNA  VAL
Sbjct:   71 GSAVASGAATKLAELVLVWSVSKPERALSIARTCVSLLEKEDAHSASGSSPLXXXSTAPGPGRSSCLNAIVVAL 144
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1205.1314.1 vs. uniprot
Match: D7FH80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH80_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 4.880e-21
Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:  109 DGWGPAVASGDATKLTELVLVWSGSKPERALSILRSCISLMEKEVACSAPASSLLHWPHTTPG 297
            D WGPAVASGDATKL ELVL+WSG KPERALS++R C+S++EKEVA S P SS L    TT G
Sbjct:   13 DEWGPAVASGDATKLAELVLLWSGLKPERALSVIRDCVSVLEKEVALSTPGSSPLRATPTTLG 75
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1205.1314.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 1.980e-16
Identity = 41/66 (62.12%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:  142 ATKLTELVLVWSGSKPERALSILRSCISLMEKEVACSAPASSLLHWPHTTPGPTRNSCLNAFTVAL 339
            AT+L +LVLVWSGS+PE ALSIL+ C+SL+EKE A SAPA   +    T PGP+R+SCLNA  +AL
Sbjct:   56 ATRLAQLVLVWSGSEPEPALSILKDCVSLLEKEFAFSAPAFPAVPLLPTMPGPSRSSCLNALVIAL 121
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1205.1314.1 vs. uniprot
Match: D7FTA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA8_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 5.750e-16
Identity = 40/63 (63.49%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:  109 DGWGPAVASGDATKLTELVLVWSGSKPERALSILRSCISLMEKEVACSAPASSLLHWPHTTPG 297
            D WG AVASGDAT L ELVL+W G  P  ALSILR C++++EKEVA SAP SS L  P T+ G
Sbjct:   13 DAWGSAVASGDATGLAELVLLWCGVLPHPALSILRRCVAVLEKEVALSAPTSSPLPSPQTSRG 75
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1205.1314.1 vs. uniprot
Match: D7FH98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH98_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 3.660e-6
Identity = 26/48 (54.17%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:  109 DGWGPAVASGDATKLTELVLVWSGSKPERALSILRSCISLMEKEVACS 252
            D W  AVA GDA KL++LVL  +GS  E ALSIL+SC++++EK+ A +
Sbjct:    2 DEWNSAVAGGDAEKLSDLVLSSAGSSTEAALSILKSCVTILEKKQAAA 49
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1205.1314.1 vs. uniprot
Match: A0A6H5KI43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI43_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 2.210e-5
Identity = 24/43 (55.81%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:  109 DGWGPAVASGDATKLTELVLVWSGSKPERALSILRSCISLMEK 237
            D W  AVA GDA KL++LVL+ +GS  + ALSIL+SC++++EK
Sbjct:    2 DEWKSAVAGGDAAKLSDLVLLSAGSSTDAALSILKSCVTMLEK 44
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1205.1314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KPY7_9PHAE2.160e-2265.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUL5_ECTSI4.630e-2170.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FH80_ECTSI4.880e-2169.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2S9_ECTSI1.980e-1662.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTA8_ECTSI5.750e-1663.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FH98_ECTSI3.660e-654.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KI43_9PHAE2.210e-555.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1205contigE-siliculosus-1a_F_contig1205:26043..32370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size324
Model size339
Exons3
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1205.1314.1prot_E-siliculosus-1a_F_contig1205.1314.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1205 26058..32370 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927726.5301847-UTR-E-siliculosus-1a_F_contig1205:26042..260571622927726.5301847-UTR-E-siliculosus-1a_F_contig1205:26042..26057Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1205 26043..26057 +
1696318655.8240373-UTR-E-siliculosus-1a_F_contig1205:26042..260571696318655.8240373-UTR-E-siliculosus-1a_F_contig1205:26042..26057Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1205 26043..26057 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927726.546867-CDS-E-siliculosus-1a_F_contig1205:26057..261511622927726.546867-CDS-E-siliculosus-1a_F_contig1205:26057..26151Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1205 26058..26151 +
1696318655.8311496-CDS-E-siliculosus-1a_F_contig1205:26057..261511696318655.8311496-CDS-E-siliculosus-1a_F_contig1205:26057..26151Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1205 26058..26151 +
1622927726.5590649-CDS-E-siliculosus-1a_F_contig1205:26595..267811622927726.5590649-CDS-E-siliculosus-1a_F_contig1205:26595..26781Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1205 26596..26781 +
1696318655.8382943-CDS-E-siliculosus-1a_F_contig1205:26595..267811696318655.8382943-CDS-E-siliculosus-1a_F_contig1205:26595..26781Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1205 26596..26781 +
1622927726.5707607-CDS-E-siliculosus-1a_F_contig1205:32326..323701622927726.5707607-CDS-E-siliculosus-1a_F_contig1205:32326..32370Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1205 32327..32370 +
1696318655.8457472-CDS-E-siliculosus-1a_F_contig1205:32326..323701696318655.8457472-CDS-E-siliculosus-1a_F_contig1205:32326..32370Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1205 32327..32370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1205.1314.1

>prot_E-siliculosus-1a_F_contig1205.1314.1 ID=prot_E-siliculosus-1a_F_contig1205.1314.1|Name=mRNA_E-siliculosus-1a_F_contig1205.1314.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=108bp
MLLRVCVFLLEKEVAFSNPASSPLQTPPTSSDGWGPAVASGDATKLTELV
LVWSGSKPERALSILRSCISLMEKEVACSAPASSLLHWPHTTPGPTRNSC
LNAFTVAL
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1205:26043..32370+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1205.1314.1 ID=mRNA_E-siliculosus-1a_F_contig1205.1314.1|Name=mRNA_E-siliculosus-1a_F_contig1205.1314.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6328bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1205:26043..32370+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCCGAGCCGGCTCTGATGCTTCTTAGGGTCTGCGTATTTTTGCTGGAGAA
GGAGGTTGCGTTTTCAAACCCGGCTTCTTCTCCCCTTCAAACGCCCCCGA
CTTCGTCTGGTGGGTTCCTGTTCGTCGTTTGGAGTTTTTGTTTTTGCATA
CGCTGTCGCGGACTCGAGGAGACACCACGGGGCGTGCCTGGTGGCTGAGA
ACTGTAATCTGTTGTTTTATAGTAGCGAGACGTCCGGACGTTTTGTATTG
ACGTAACGCCGGTCATTGATCTGTTTGGCCGTTTTGCACCAATCTTGGAC
GGGCGTTCCGAACGGTCGCAAGCTCTTGTGGATGCCGCCTGATATTTGGA
TATCACGACTAGGTCTTGCTTCAGTGGCGAAACACGGACTATGTAGACGA
AACAGGTGTGTTTGAATCACTTTCGAGGGAAATCACTGTATTCGGAAGAT
AGCGGGGAACGTGTCCAACCCTGATGAATATATATACTAGACTTCAAGTT
ATCCGAAACCACCAAGTATCTTTGACATCACCAGCCAATTGATTCTTCCA
CAGATGGATGGGGCCCGGCCGTGGCGAGCGGCGACGCGACCAAGCTAACC
GAGCTGGTGCTGGTTTGGTCCGGTTCAAAGCCGGAGCGGGCTCTGTCGAT
TCTTCGGAGCTGCATTTCTTTGATGGAGAAGGAGGTTGCGTGTTCAGCTC
CGGCTTCTTCTCTCCTTCATTGGCCCCATACTACACCTGGTGGGTTCCTC
GTTGATGTCTGGAGCTAGTGAACAACCAACACTCTCATCGGATTCGACAG
ATGCCGAAAACCTTGCTTGGCTGTTGGCTGGAACGTATTTCTTGTGCAAT
ATCGCCGATCTTGGATGGACACAAAATATTGTGAATCGAACCTCAACCTT
GACCTTTTGTCACCATGTTGGACGGGCGTTCTGACCTGTTGCAAGTTGTC
TCTCCACCTATTTTGAGGAAGACTGTTGTCCTGGTAGTCGTTACGGGGAC
GCCAGGTTCCTCGCCATCCCCTGTGTCGCCGGGGCTCAGTGATGGTCATT
TGCCCCCCGCGTGTTCTACGTACCGCTTAGGTTTCGTTTCGAGCGGCATG
TTTTGGACAGGATCATATTTGGCGGCCTCACAGTGAGGCTCCACATACTA
TTCATGACAAGACACCCGCTCTAAGTGTAGGCCTACCTCCATGTATGGTC
AGCTCGAAAGAACGCAGTCAGTGGGGTCTCCGAAACAGTGCGTTGTGGTC
GGCTAACGGAGTATGGCCTATTGGGTGAGGTAAAGTGTAGTGTGGAATTT
TCTGTAGCGATACCGACCGAAAGTGGTCACCCAGGGGATCTGGTTGACGA
CCGCCGAATATCGTTTGTAGCGGCTCAAGCGCAGAGTAACCGGACCGGGC
TTCCCCAGACAGCTTTCACCGTTTTGGTCACCCTGGTCTTTTCGCTGGCG
CAAGCAGTATCTTCGGAGCAGGACCATTCGTCTTGGTGGTACTGCCGCAA
CTCTGTAGTCGCCGATCGTGTGAGGAATATAAAGTACATCTAACATGGAC
TCGGATTTAGATCACCCATTAACCGTCAATTCGAATCCGAAATCCAAACG
CCAACGACACTGCAAGGCGACGAGGTCTATCGACCTCTTCAGCCTGGTCG
GTGTTCCGACCATGCACAGGGCCGAATAGAATTCAAAACGCACGGCCGCC
TCCGCACGCGCTCCACGTGTATTGGTTATGAGATCGGACGGTGCCGTGTG
TGCATCCACAGAAGAACCTGCACCCCCTTGCACAAACACGCGCACACACA
AATCTCGGCGTACCGAGAAACAGATGGTGCAGATACCTGTAGCTCCAGCT
ATGTTTGGAGCTACTCGGATACAGTGGATGCACGTCCTGTGTGCTGTATG
TGTAGCTTTGTTCTCCCTGCAAACGTTAAGCTCTTGAGATATACCTTGGT
TCAGATAGCGCTACCAATTGTTTCCACCGTAAACGGTGGCCCGTGTGGCG
GACAACGGTGCGACCCGACTCGAGAAGCCCGGTCACGGTACTCTACACTT
GAGTCGCCACCAAGCGGTACAATCGGCGCGGGGCCTCGGCGTCAGGTCCC
GAGTCAATTCGTCATGCACTGTCTTGTGCTTCACTCCCCTACATAATATT
TCGTTGTCTGACATGTGCCCTTTTCCAGCACAAAAACGTGCTGTAAGTTG
CTTTGCCAACGGGCAATATATCCGTGTGCAATCGAACTCCTATGCTGTAC
CTGGCGCTTCCCACTCGCGTGGTTCCGCTATATTCGTGCTTGAGTCTTCT
CTGTCATAGTCAAAGGGATTGTTTGCGTTCTGCAGTGACGCCTATACCCC
CGCGGGGTATGTCGAGATCGTTCCGCCAATACGAAATCCCTGTAAAGAAA
AACGGACCACGATATATAGTGTCCTTTTTCCGAGACAATTCAACTTCGCT
CATTTCCAACATTATTTACCCTCCTATCCTCTCGTTCGTCGGGACCCTAT
TTATTTGTCCCAATATTTGCTCGAATTGGCAACAAGTGGTCCTCGACATG
TCTTATGTTAGCTCTGACACAAGATTATTTTCCCGTATGTATAACATAGA
AAAACAGTCTTCTTGGGTAACTCTTGCACGGTCAAGGTTTGGCCCCGAGA
TTTCTGTACTTCAGGGACAGGTGTAACAACTCCAACGCTATTTATCCGAA
CGGTAGATTGTCTCGTCAAGAAATTTCTCTGTATCGTCGTTGTTGTGTAT
CTTTTAAGCTGGGGTGAAGGAGCGGCAAGCTGTCACCAGCGCATTGTGAC
ATGTGACGGTGGGTGCACAGTATCCTCTCACCGTTAGCCCCGCCAGGATA
ACATAGCACTGAGTCATGATACAGGATCCGTTTATTTTTGTATCTTTCCA
TTGTTATATGGGGCTACAGCACCCCTACCAGAACCCATACAACAGTCGAA
ACCCTCGAGTTTTTTTATAGTAACAAGCCAGATTATTTTACACACTGCTC
GTGCCTCAGCTCGATCATGGCGTAAAGGTCTTCAGCTTCTGTCGCGGAAA
ATCTCAGACCTATATTCGATTTTGACCCCACTTTTTTCTACTCCAAAAAA
GCGACCCCAATTTCTGTTATTTACTTGGTTTTAGAGTTGGCGATCTCCGG
TCTCTTCTCTAAAACCAAGTTGTCTTTTTCGGTCGATGTTTCTCGAGATT
CCACCTACGGAATTTCGTGTGCGTTGGGAGAGGTGACCTTCCTGGCCCCG
TCCGCCCCTCTTGCACGTTTGGTGCACAAGCTGTTGTCAGTTCTCGGGAA
CGCGTCCGTTAATGTATGTCATATTCGTAGATCTACCCCGTGCGAATGCG
AAGAACCGAACCACCCCCCTCCCTCTCCTTCTCTACCCCCACTGGTCGTA
CCCCACACGCGGGAAGGATGCACGTCCACCGTTGGTTGCATGCAGGAAGG
TCGACCAATTGCCTCAAGACACAGCTAGCTCTCGCCAACAATGCCTGAAA
CTTTCGCCGATAACCACTCACTGTGTATGACAATGCAGGCAGTGCTCAAA
CACATCAGAATGTGTTCAAAAATTGCATCGGGGTAAATGTTTGCACAAAG
CGCATCTATCTCAGAAGTACTCCAACCTCATCAGGAGGAAAAAAGTATAT
GCACTCACGGGTACGCACATAAGCCATGCACCCATAACTTGGCAGTCCTG
TCTATACAGACCTGCACGAACACAGTTTACCACCCAAGAGCGACCTAGCC
CTACTCCAAGGCCCACCAACCTAGCACCTAGCCACGTCAGGACCAACCGA
GCACCTATCCAGGCAATACCAACCTAGATTTATCCCATCAACGCCAATCT
AGCACCTATCGAAGCAGTAACCTAAAGTTTTCCCCGTCAACACCAACCTA
GCCCTATTGCAGGCACAACAACCTAGAACTGAGGCACCCAGCGCCAACCT
AGCATCTATCGGGTGGGTTTGGGGTTGGGGTTTGGGTTAGCGTTAGGGTT
TTTAGACGGTTTCGTGCCCCTGCCAAAGCAGAGCATCTAGAATTTAGAAG
TACAAAATTTGCCCTTGGTTGAAAATCAACTGGTCACTGGATGAAGGGAC
ACGTCTGCAGCGTGCAGAAGAAGGGCAGGTCAGGGGTTCGAGCCTCGGAA
CATATTTCCCTTTTGTTCGCCTGCAGGTGGTGCTTTCGGTCTGTCGACGG
CATGGGTGCATGGCTTATGTGCGTACCCATGGGTGCATATACCTTTTGGC
TCATCAGGATGATGTGTACACTTTTTTTTTGTTTCCAGAATGCCTGTGGA
CCACAACCAACCACAGCATGACAAACTTGTCACATCTCCCCACATACACG
CATCACTACTGTAGATCGACCACTACTGTAGTGTGTGGCGCTGCCGTCAA
TAATAGTGGCATTTTTCCTTTTGCCCCTCCCCAGCAACAAGCCATTTTTG
GCGTCCGGGACGCTGACTAGCGGACCGCAGGGACCGCAGCACAGCACATA
TACTTTGTAGTGGTAGTGGTATCTTGCACAAACTTGAAAATATTTCGGAC
TCCTTCCAGATTTCGGTCTCCTTCCAGACTGACTGCCGACCACGCAGTCA
GCATATTAGTCGCAGTCAGCATCTACGGCATGTAGTGTAGTGTCATGGAA
ATCTCGTGTCACAATCTCAACATACGTTTACATGAACCCGATGGTCTACA
TCGGAATACGGCTGTAGTGGTATTGCCGTAAATAGGGGCAAATTCTCCTC
TTGCCTTGTCTTGCCCCGTACGTGCCACTCACACATGTGTCGGTCCGTCC
AGAGTTACTTCTGTACTGTTGCGACGGAATACATATGCAGCACGACTGCC
AGCCGTGAGACTTCTCAGCAGTGCTGAATTGACGGAATAGATGCGCAGCA
CGCTTCCAACCATGTTGGGTCTACAGGTCAGACGCCTGGGCTTCCCGTCC
TCCTTCTCGCACACTCCCAAGATTGTAGGGATGCTGTACGCCCGGCTTGT
CGCCTTCGCAGCCCTCTTTTCCTTTGCGCGTTGAGTCCGGTTACTTATGA
AGAGGAAACCTCCCCCTCACAAAGGACTGCTGGCCCGAAAAAATGGTGCC
CCCACCCAAGCAACGACCCACTTCTTTGCGTCCGGAACGGCCTGCGGCGG
CAATCCTCTCGCTGACGACTCCGTTTTTCCCCCGGGAAGTGGTACGCGTC
AGGCGAGGCTAGCAGCTGCGCGGGCAAGTCGTTCCGCAATGCGTACGAAC
GAGAAGGCCTCTATTTGGCGACAACACCCTCAAGCTACCTCAGCAGAAGA
CGAACAAGAGAGCAAAGCACTCCAACGAACAATCGCACCGTGCCGGCGAA
GTCGCCTGCTGCGTGACTAATTTCTTTTACGGGTTGGCGTTCGTTACTTC
TTCTGCAGGGTGGTAGTAAAATGTGCTTTGGCTGGAATATCCATCGATTT
CCATCTGCGCCAACCAACGTACTGTAGCTCAGTCCTTTTTCCTTTTTGTT
GTGTTCCTTCAGATATTTTCGGGTTATTGTTTACCGTTTGTTTGTAGGGA
CGTAGGAACCATCGCGCCGTGAATTTTTCGGCACGTTCAACCACGAAACA
ATTCCACCAACATCTCGCTTTCGACACCGGCCGGTCATGACCCAATCGGG
ACTGACCTCGTTCTGTCCCTGCCGTTGCACGGCAGCGCTCACTCGCGCTA
GCTAGTGTTTGTTTCGCGACTTCGGGGTCCTTCGCCGCATTCCATCTGTC
GGGGATTGATTGTTTGTACAAACAATATATGTTCGCCCTCATGTTCGCCC
TCCAGACGCACACATATATGTGCGGAGATGCCAGGGCGTTCACATCCATC
CTTCTCATCGTCCATTCGCCGCTCTCCTCACCCTACACATTGTCTTTACA
AGTTCCCCCCCGGGAAAAGAAAAACGGAAAGGTCTTCAGTTGAGGCCGTG
GCTACCCGCAGGCTGTTTAGTACACACTGCTCGTGCCTCAGCTCGATCAT
TGCGTACCCGGCAACGGGATTGTCGGTGACCAATGTGAGAGGATCATGGG
CTTTCTCTTGGTAGATAAACGACGTACCAGGCCAAAACTCGATGCCTTTA
TCAAATGGTTCTATTTGATGCCCAGCTCCTCACGTTTTCATTTTGTGGGC
ACCGTGCTCCGTTCTGGTTGCCATGGTCTTGGAACGTTCACGGTTTGCCT
TCCATCCATAGAGTGAAAGCCATAACACTGGCCATTTTTCTTTATCTAAC
CAACGTATACGTGCACTGTGTATTCCTTCCTCAGGACCCACTCGTAACTC
GTGCTTGAACGCCTTCACCGTTGCTCTG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1205:26043..32370+

>mRNA_E-siliculosus-1a_F_contig1205.1314.1 ID=mRNA_E-siliculosus-1a_F_contig1205.1314.1|Name=mRNA_E-siliculosus-1a_F_contig1205.1314.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=648bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1205:26043..32370+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTTCTTAGGGTCTGCGTATTTTTGCTGGAGAAGGAGGTTGCGTTTTC
AAACCCGGCTTCTTCTCCCCTTCAAACGCCCCCGACTTCGTCTGATGCTT
CTTAGGGTCTGCGTATTTTTGCTGGAGAAGGAGGTTGCGTTTTCAAACCC
GGCTTCTTCTCCCCTTCAAACGCCCCCGACTTCGTCTGATGGATGGGGCC
CGGCCGTGGCGAGCGGCGACGCGACCAAGCTAACCGAGCTGGTGCTGGTT
TGGTCCGGTTCAAAGCCGGAGCGGGCTCTGTCGATTCTTCGGAGCTGCAT
TTCTTTGATGGAGAAGGAGGTTGCGTGTTCAGCTCCGGCTTCTTCTCTCC
TTCATTGGCCCCATACTACACCTGATGGATGGGGCCCGGCCGTGGCGAGC
GGCGACGCGACCAAGCTAACCGAGCTGGTGCTGGTTTGGTCCGGTTCAAA
GCCGGAGCGGGCTCTGTCGATTCTTCGGAGCTGCATTTCTTTGATGGAGA
AGGAGGTTGCGTGTTCAGCTCCGGCTTCTTCTCTCCTTCATTGGCCCCAT
ACTACACCTGGACCCACTCGTAACTCGTGCTTGAACGCCTTCACCGTTGC
TCTGGACCCACTCGTAACTCGTGCTTGAACGCCTTCACCGTTGCTCTG
back to top