mRNA_E-siliculosus-1a_F_contig1194.1234.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1194.1234.1
Unique NamemRNA_E-siliculosus-1a_F_contig1194.1234.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1194.1234.1 vs. uniprot
Match: D8LGV3_ECTSI (2OG-Fe(II) oxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGV3_ECTSI)

HSP 1 Score: 557 bits (1435), Expect = 8.930e-195
Identity = 297/346 (85.84%), Postives = 307/346 (88.73%), Query Frame = 3 
Query:   81 EGKRGRSSRPNEQVGAKRRWGGSSSSSQPKAPATATCSCETFPLQSGTGKLRFWPSLLTDAAQRRLFEELTVNPNLLPLDPKTGCSGGGXXX----DGSPGLREDAAARGRWMQRPIKLFGREIPQPRLTCFYGRRGVSYRRVLFEYSGKTLEATPWNGVPAIQEILAAAEAAAGVDPGYFNCVLLNWYRDGADYMGWHSDDEKELEKGAAIASVSLGAGRRFQLRRKKDHTQKMEFVLGGGSLLLMEGNTQEHWQHRVPKRTAKEEREIRQSPQERREAKALSPLLLSWSGQGGKESSSLNTGESAGGNGSIAGGRGGSSLLTSSAGARGGRINLTFRRIKEGVS 1106
            EGKRGR+SRPNEQVGAKRRW GSSS             CETF LQSGTGKLRFWPSLLTDAAQRRLFEELTV+P+L PLDPK G S   XXX     G+PGLRED AARGRWMQRPIKLFGREIPQPRLTCFYGR GVSYR     YSGKTLEATPW+GVPAIQEILAAA AAAGVDPGYFNCVLLNWYRDGADYMGWHSDDEKELEKGAAIASVSLGAGRRFQLRRKKDH QK+EF+LGGGSLLLMEG+TQEHWQHRVPKRTAKEERE+RQSPQERREAKALSPLLLSWSGQGGKESSSL TGES GGNGSI GGR GSSLLTSSAGARGGRINLTFRR+KEGVS
Sbjct:   10 EGKRGRASRPNEQVGAKRRWSGSSSXXXXXXXXXXXXXCETFHLQSGTGKLRFWPSLLTDAAQRRLFEELTVDPDLRPLDPKAGSSXXXXXXXXXXSGNPGLREDGAARGRWMQRPIKLFGREIPQPRLTCFYGRTGVSYR-----YSGKTLEATPWDGVPAIQEILAAAGAAAGVDPGYFNCVLLNWYRDGADYMGWHSDDEKELEKGAAIASVSLGAGRRFQLRRKKDHAQKVEFILGGGSLLLMEGSTQEHWQHRVPKRTAKEEREVRQSPQERREAKALSPLLLSWSGQGGKESSSLKTGES-GGNGSITGGRVGSSLLTSSAGARGGRINLTFRRVKEGVS 349
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BLAST of mRNA_E-siliculosus-1a_F_contig1194.1234.1 vs. uniprot
Match: A0A6H5J9B1_9PHAE (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B1_9PHAE)

HSP 1 Score: 257 bits (656), Expect = 3.610e-80
Identity = 140/151 (92.72%), Postives = 144/151 (95.36%), Query Frame = 3 
Query:  654 MGWHSDDEKELEKGAAIASVSLGAGRRFQLRRKKDHTQKMEFVLGGGSLLLMEGNTQEHWQHRVPKRTAKEEREIRQSPQERREAKALSPLLLSWSGQGGKESSSLNTGESAGGNGSIAGGRGGSSLLTSSAGARGGRINLTFRRIKEGVS 1106
            MGWHSDDEKELEKGAAIASVSLGAGRRF+LR +KD TQKMEFVLGGGSLLLMEG+TQEHWQHRVPKRTAKEEREI QSPQERR+AKALSPLLLSWSGQGGK  SSLNTGES GGNGSIAGG GGSSLLTSSAGARGGRINLTFRRIKEGVS
Sbjct:    1 MGWHSDDEKELEKGAAIASVSLGAGRRFELRGRKDRTQKMEFVLGGGSLLLMEGSTQEHWQHRVPKRTAKEEREILQSPQERRKAKALSPLLLSWSGQGGKVLSSLNTGES-GGNGSIAGGPGGSSLLTSSAGARGGRINLTFRRIKEGVS 150
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BLAST of mRNA_E-siliculosus-1a_F_contig1194.1234.1 vs. uniprot
Match: A0A355CG02_9CYAN (Alpha-ketoglutarate-dependent dioxygenase AlkB n=2 Tax=unclassified Microcoleaceae TaxID=2053578 RepID=A0A355CG02_9CYAN)

HSP 1 Score: 150 bits (378), Expect = 1.220e-38
Identity = 80/164 (48.78%), Postives = 100/164 (60.98%), Query Frame = 3 
Query:  372 LREDAAARGRWMQRPIKLFGREIPQPRLTCFYGRRGVSYRRVLFEYSGKTLEATPWNGVPAIQEILAAAEAAAGVDPGYFNCVLLNWYRDGADYMGWHSDDEKELEKGAAIASVSLGAGRRFQLRRKKDHTQKMEFVLGGGSLLLMEGNTQEHWQHRVPKRTAK 863
            L  D   R  W Q PIK+FG+ + QPRLT +YG +        + YSG T++  PWN     + +L   +    +    FN VLLN YR+G DYMGWHSDDE+ L KGA IASVS G  RRF LRR+ +H  K+E  LG G  L+M G+TQ+ WQH VPK TAK
Sbjct:   35 LLHDLLDRIEWKQEPIKIFGKSVMQPRLTAYYGTQA-------YTYSGVTMQPLPWN-----EPLLQIKQEIEPLVNTQFNGVLLNLYRNGQDYMGWHSDDERNLAKGAIIASVSFGETRRFILRRRDNHQIKVELNLGDGDFLVMGGDTQKFWQHHVPK-TAK 185
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BLAST of mRNA_E-siliculosus-1a_F_contig1194.1234.1 vs. uniprot
Match: A0A352A9Z2_9CYAN (Alpha-ketoglutarate-dependent dioxygenase AlkB n=1 Tax=Cyanobacteria bacterium UBA9273 TaxID=2055791 RepID=A0A352A9Z2_9CYAN)

HSP 1 Score: 148 bits (374), Expect = 3.910e-38
Identity = 86/216 (39.81%), Postives = 111/216 (51.39%), Query Frame = 3 
Query:  204 FPLQSGTGKLRFWPSLLTDAAQRRLFEELTVNPNLLPLDPKTGCSGGGXXXDGSPGLREDAAARGRWMQRPIKLFGREIPQPRLTCFYGRRGVSYRRVLFEYSGKTLEATPWNGVPAIQEILAAAEAAAGVDPGYFNCVLLNWYRDGADYMGWHSDDEKELEKGAAIASVSLGAGRRFQLRRKKDHTQKMEFVLGGGSLLLMEGNTQEHWQHRVPK 851
             PLQ     + F+PSLL +    R+F +L+   N                                W Q  IK++GR +PQPRLT +Y   G+SY      YSG T+  +PW     + ++ A AEA +GV    FN VLLN YRDG D MGWHSDDE EL     I S+SLG  RRF LR + +   K +  L  GS LLM+G TQ +WQH++PK
Sbjct:    4 IPLQLPDADIVFYPSLLDEQESDRIFTQLSQTLN--------------------------------WRQDWIKIYGRSMPQPRLTAWYANPGISYT-----YSGITMHPSPWTHT--LLDLKAKAEAVSGV---VFNSVLLNLYRDGNDSMGWHSDDEPELGDNPVIGSLSLGGTRRFMLRHRTEKALKHQLELTSGSFLLMQGTTQHYWQHQIPK 177
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BLAST of mRNA_E-siliculosus-1a_F_contig1194.1234.1 vs. uniprot
Match: A0A0M1K085_9CYAN (2OG-Fe(II) oxygenase n=2 Tax=Planktothricoides TaxID=132607 RepID=A0A0M1K085_9CYAN)

HSP 1 Score: 148 bits (373), Expect = 6.100e-38
Identity = 76/150 (50.67%), Postives = 91/150 (60.67%), Query Frame = 3 
Query:  402 WMQRPIKLFGREIPQPRLTCFYGRRGVSYRRVLFEYSGKTLEATPWNGVPAIQEILAAAEAAAGVDPGYFNCVLLNWYRDGADYMGWHSDDEKELEKGAAIASVSLGAGRRFQLRRKKDHTQKMEFVLGGGSLLLMEGNTQEHWQHRVPK 851
            W   PIK+FG+ + QPRLT +YG +        + YSG T++  PWN       +L   E    +    FN VLLN YRDG DYMGWHSDDEKEL KG AIAS+SLG  RRF  RRK +H  K E  L  G  L+M G+TQ+ WQH VPK
Sbjct:   45 WKHEPIKIFGKSVLQPRLTAYYGTKA-------YTYSGVTMQPLPWNA-----PLLQIKEKIEPLVNTQFNGVLLNLYRDGQDYMGWHSDDEKELVKGGAIASLSLGETRRFIFRRKDNHQIKFELKLADGDFLVMGGDTQKFWQHYVPK 182
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BLAST of mRNA_E-siliculosus-1a_F_contig1194.1234.1 vs. uniprot
Match: UPI001684B391 (alpha-ketoglutarate-dependent dioxygenase AlkB n=2 Tax=Planktothrix TaxID=54304 RepID=UPI001684B391)

HSP 1 Score: 148 bits (373), Expect = 6.100e-38
Identity = 76/150 (50.67%), Postives = 92/150 (61.33%), Query Frame = 3 
Query:  402 WMQRPIKLFGREIPQPRLTCFYGRRGVSYRRVLFEYSGKTLEATPWNGVPAIQEILAAAEAAAGVDPGYFNCVLLNWYRDGADYMGWHSDDEKELEKGAAIASVSLGAGRRFQLRRKKDHTQKMEFVLGGGSLLLMEGNTQEHWQHRVPK 851
            W Q PIK+FG+ + QPRLT +YG R        + YSG T++  PWN +P +Q I    E         FN VLLN YRDG DY+GWHSDDEKEL KG  I S+SLG  RRF  RR+ +H  K+E  L  G  L+M G TQ+ WQH VPK
Sbjct:   45 WKQEPIKIFGKSVLQPRLTAYYGDRA-------YTYSGVTMQPLPWN-LPLLQ-IKEKIEPLVNTQ---FNGVLLNLYRDGQDYIGWHSDDEKELAKGGVIGSLSLGETRRFIFRRRDNHQNKIELTLSDGDFLIMGGETQKFWQHHVPK 182
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1194.1234.1 vs. uniprot
Match: A0A291R0S7_9BACT (Alpha-ketoglutarate-dependent dioxygenase AlkB n=2 Tax=Chitinophaga caeni TaxID=2029983 RepID=A0A291R0S7_9BACT)

HSP 1 Score: 147 bits (372), Expect = 8.470e-38
Identity = 77/150 (51.33%), Postives = 93/150 (62.00%), Query Frame = 3 
Query:  402 WMQRPIKLFGREIPQPRLTCFYGRRGVSYRRVLFEYSGKTLEATPWNGVPAIQEILAAAEAAAGVDPGYFNCVLLNWYRDGADYMGWHSDDEKELEKGAAIASVSLGAGRRFQLRRKKDHTQKMEFVLGGGSLLLMEGNTQEHWQHRVPK 851
            W  +PIK+FG+EI QPRLT FYG  G SY      YSG    A PW+  PA+  I    E A    P  FNCVL N YRDG D MGWH D+E+ L     IASVSLGA R FQ+R     + ++ F LG GSLL+M G TQ++W+H+VPK
Sbjct:   40 WKHKPIKIFGKEIMQPRLTAFYGDPGTSYT-----YSGLQQAAIPWH--PALSGIKRKIETAC---PEPFNCVLANLYRDGQDSMGWHRDNEESLGACPTIASVSLGASRSFQMRDYATKSTRLSFELGNGSLLIMSGETQQYWEHQVPK 179
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BLAST of mRNA_E-siliculosus-1a_F_contig1194.1234.1 vs. uniprot
Match: A0A8J7K6S7_9GAMM (Alpha-ketoglutarate-dependent dioxygenase AlkB n=1 Tax=Pontibacterium sp. N1Y112 TaxID=2781979 RepID=A0A8J7K6S7_9GAMM)

HSP 1 Score: 147 bits (370), Expect = 1.410e-37
Identity = 79/150 (52.67%), Postives = 93/150 (62.00%), Query Frame = 3 
Query:  402 WMQRPIKLFGREIPQPRLTCFYGRRGVSYRRVLFEYSGKTLEATPWNGVPAIQEILAAAEAAAGVDPGYFNCVLLNWYRDGADYMGWHSDDEKELEKGAAIASVSLGAGRRFQLRRKKDHTQKMEFVLGGGSLLLMEGNTQEHWQHRVPK 851
            W Q  I+LFG++ P PRL CF G  G++YR     YS   L+A  W+  PAIQ +    EA   +  G FN VL+N YRDG D MGWHSDDE EL +   IAS+SLG  RRF LRRK +H  K E VL  GSLLLM G  Q  WQH VP+
Sbjct:   38 WQQDRIQLFGKKHPIPRLQCFQGEPGITYR-----YSNLCLDAAAWH--PAIQCLREQLEA---LGYGSFNAVLMNLYRDGLDSMGWHSDDEAELGENPVIASISLGEARRFLLRRKDNHATKQELVLEHGSLLLMSGELQHFWQHSVPR 177
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BLAST of mRNA_E-siliculosus-1a_F_contig1194.1234.1 vs. uniprot
Match: A0A8B5WG54_9GAMM (Alpha-ketoglutarate-dependent dioxygenase AlkB n=1 Tax=Wenzhouxiangella sp. TaxID=1979961 RepID=A0A8B5WG54_9GAMM)

HSP 1 Score: 146 bits (369), Expect = 1.900e-37
Identity = 84/164 (51.22%), Postives = 103/164 (62.80%), Query Frame = 3 
Query:  372 LREDAAARGRWMQRPIKLFGREIPQPRLTCFYGRRGVSYRRVLFEYSGKTLEATPWNGVPAIQEILAAAEAAAGVDPGYFNCVLLNWYRDGADYMGWHSDDEKELEKGAAIASVSLGAGRRFQLRRKKDHTQKMEFVLGGGSLLLMEGNTQEHWQHRVPKRTAK 863
            LRE       W QRPI +FGR++ QPRLT F+G   V+YR     YSG+TL A PW G   + EI    EA  G+    FN VL N YRDG D MGWH+DDE EL +   IAS+SLGA RRF LR ++    ++E VL  GSLL+M G+ Q  WQH+VP RTA+
Sbjct:   24 LREKMLGSLDWDQRPIFMFGRKVLQPRLTAFHGDDHVAYR-----YSGQTLHARPWTG--DLSEIRERLEAVLGIR---FNSVLCNLYRDGRDSMGWHADDEVELGQNPVIASISLGAARRFLLRARQGD-DRLELVLRNGSLLVMAGDCQHFWQHQVP-RTAR 175
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1194.1234.1 vs. uniprot
Match: A0A7C3ZNA2_9CYAN (Alpha-ketoglutarate-dependent dioxygenase AlkB n=1 Tax=Planktothricoides sp. SpSt-374 TaxID=2282167 RepID=A0A7C3ZNA2_9CYAN)

HSP 1 Score: 145 bits (366), Expect = 4.010e-37
Identity = 79/154 (51.30%), Postives = 96/154 (62.34%), Query Frame = 3 
Query:  402 WMQRPIKLFGREIPQPRLTCFYGRRGVSYRRVLFEYSGKTLEATPWNGVPAIQEILAAAEAAAGVDPGYFNCVLLNWYRDGADYMGWHSDDEKELEKGAAIASVSLGAGRRFQLRRKKDHTQKMEFVLGGGSLLLMEGNTQEHWQHRVPKRTAK 863
            W Q PIK+FG+ + QPRLT +YG +G       + YSG  +E  PWN  P +Q I A  E     +   FN VLLN YRDG DY+GWHSDDEK+L KGA I S+SLG  RRF  RR+ +H  + E  L  G  L M G+TQ+ WQH VPK TAK
Sbjct:   31 WKQEPIKIFGKSVLQPRLTAYYGTQG-------YTYSGVKMEPLPWNE-PLLQ-IKAKIEPLVDTE---FNGVLLNLYRDGQDYIGWHSDDEKDLAKGAVIGSLSLGDSRRFIFRRRDNHQIRAELNLSDGDFLTMGGDTQKFWQHHVPK-TAK 171
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1194.1234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGV3_ECTSI8.930e-19585.842OG-Fe(II) oxygenase n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5J9B1_9PHAE3.610e-8092.72Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A355CG02_9CYAN1.220e-3848.78Alpha-ketoglutarate-dependent dioxygenase AlkB n=2... [more]
A0A352A9Z2_9CYAN3.910e-3839.81Alpha-ketoglutarate-dependent dioxygenase AlkB n=1... [more]
A0A0M1K085_9CYAN6.100e-3850.672OG-Fe(II) oxygenase n=2 Tax=Planktothricoides Tax... [more]
UPI001684B3916.100e-3850.67alpha-ketoglutarate-dependent dioxygenase AlkB n=2... [more]
A0A291R0S7_9BACT8.470e-3851.33Alpha-ketoglutarate-dependent dioxygenase AlkB n=2... [more]
A0A8J7K6S7_9GAMM1.410e-3752.67Alpha-ketoglutarate-dependent dioxygenase AlkB n=1... [more]
A0A8B5WG54_9GAMM1.900e-3751.22Alpha-ketoglutarate-dependent dioxygenase AlkB n=1... [more]
A0A7C3ZNA2_9CYAN4.010e-3751.30Alpha-ketoglutarate-dependent dioxygenase AlkB n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1194contigE-siliculosus-1a_F_contig1194:22577..26004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1041
Model size1671
Exons5
Ec32 orthologEc-28_001310.1
Ec32 ortholog descriptionAlpha-ketoglutarate-dependent dioxygenase AlkB-like
Hectar predicted targeting categoryother localisation
BRITEko00000,ko01000,ko03400
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.L
EC1.14.11.33,1.14.11.54
EggNOG OGs2QW9E@2759,COG3145@1
EggNOG free text desc.RNA N1-methyladenosine dioxygenase activity
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006304,GO:0006307,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008198,GO:0008283,GO:0009451,GO:0009987,GO:0016070,GO:0016491,GO:0016705,GO:0016706,GO:0016787,GO:0031974,GO:0031981,GO:0032451,GO:0033554,GO:0034641,GO:0035510,GO:0035511,GO:0035513,GO:0035514,GO:0035515,GO:0035552,GO:0035553,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043734,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044728,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0051213,GO:0051716,GO:0051747,GO:0055114,GO:0070013,GO:0070988,GO:0070989,GO:0071704,GO:0080111,GO:0090304,GO:0140097,GO:0140098,GO:1901360,GO:1990930
KEGG koko:K10859,ko:K10860
Preferred nameALKBH3
Seed eggNOG ortholog2880.D8LGV3
Seed ortholog evalue6.3e-156
Seed ortholog score557.0
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927711.977511-UTR-E-siliculosus-1a_F_contig1194:22576..231381622927711.977511-UTR-E-siliculosus-1a_F_contig1194:22576..23138Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1194 22577..23138 -
1696318649.8531575-UTR-E-siliculosus-1a_F_contig1194:22576..231381696318649.8531575-UTR-E-siliculosus-1a_F_contig1194:22576..23138Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1194 22577..23138 -
1622927712.0772524-UTR-E-siliculosus-1a_F_contig1194:25936..260041622927712.0772524-UTR-E-siliculosus-1a_F_contig1194:25936..26004Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1194 25937..26004 -
1696318649.9114323-UTR-E-siliculosus-1a_F_contig1194:25936..260041696318649.9114323-UTR-E-siliculosus-1a_F_contig1194:25936..26004Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1194 25937..26004 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927711.9959068-CDS-E-siliculosus-1a_F_contig1194:23138..234771622927711.9959068-CDS-E-siliculosus-1a_F_contig1194:23138..23477Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1194 23139..23477 -
1696318649.8652842-CDS-E-siliculosus-1a_F_contig1194:23138..234771696318649.8652842-CDS-E-siliculosus-1a_F_contig1194:23138..23477Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1194 23139..23477 -
1622927712.0171916-CDS-E-siliculosus-1a_F_contig1194:23921..240221622927712.0171916-CDS-E-siliculosus-1a_F_contig1194:23921..24022Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1194 23922..24022 -
1696318649.8750982-CDS-E-siliculosus-1a_F_contig1194:23921..240221696318649.8750982-CDS-E-siliculosus-1a_F_contig1194:23921..24022Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1194 23922..24022 -
1622927712.0386946-CDS-E-siliculosus-1a_F_contig1194:24542..247061622927712.0386946-CDS-E-siliculosus-1a_F_contig1194:24542..24706Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1194 24543..24706 -
1696318649.8890483-CDS-E-siliculosus-1a_F_contig1194:24542..247061696318649.8890483-CDS-E-siliculosus-1a_F_contig1194:24542..24706Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1194 24543..24706 -
1622927712.0541708-CDS-E-siliculosus-1a_F_contig1194:25217..255511622927712.0541708-CDS-E-siliculosus-1a_F_contig1194:25217..25551Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1194 25218..25551 -
1696318649.8964465-CDS-E-siliculosus-1a_F_contig1194:25217..255511696318649.8964465-CDS-E-siliculosus-1a_F_contig1194:25217..25551Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1194 25218..25551 -
1622927712.0658884-CDS-E-siliculosus-1a_F_contig1194:25833..259361622927712.0658884-CDS-E-siliculosus-1a_F_contig1194:25833..25936Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1194 25834..25936 -
1696318649.9040883-CDS-E-siliculosus-1a_F_contig1194:25833..259361696318649.9040883-CDS-E-siliculosus-1a_F_contig1194:25833..25936Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1194 25834..25936 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1194.1234.1prot_E-siliculosus-1a_F_contig1194.1234.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1194 23139..25936 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1194.1234.1

>prot_E-siliculosus-1a_F_contig1194.1234.1 ID=prot_E-siliculosus-1a_F_contig1194.1234.1|Name=mRNA_E-siliculosus-1a_F_contig1194.1234.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=347bp
MSSAEGKRGRSSRPNEQVGAKRRWGGSSSSSQPKAPATATCSCETFPLQS
GTGKLRFWPSLLTDAAQRRLFEELTVNPNLLPLDPKTGCSGGGGGGDGSP
GLREDAAARGRWMQRPIKLFGREIPQPRLTCFYGRRGVSYRRVLFEYSGK
TLEATPWNGVPAIQEILAAAEAAAGVDPGYFNCVLLNWYRDGADYMGWHS
DDEKELEKGAAIASVSLGAGRRFQLRRKKDHTQKMEFVLGGGSLLLMEGN
TQEHWQHRVPKRTAKEEREIRQSPQERREAKALSPLLLSWSGQGGKESSS
LNTGESAGGNGSIAGGRGGSSLLTSSAGARGGRINLTFRRIKEGVS*
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mRNA from alignment at E-siliculosus-1a_F_contig1194:22577..26004-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1194.1234.1 ID=mRNA_E-siliculosus-1a_F_contig1194.1234.1|Name=mRNA_E-siliculosus-1a_F_contig1194.1234.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3428bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1194:22577..26004- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGGCACACTGGCACACAACACACGCTTCTGTTGCTACATATCTCGCTTCC
CCTGTCCTGCTCCTTCCCATGTCTTCGGCAGAGGGAAAGCGAGGAAGATC
TTCTCGGCCGAATGAACAGGTTGGAGCCAAGCGACGGTGGGGCGGAAGTT
CCAGCTCTTCACAGCCCAAGGGTACGCAAAATCCCACCAACGATCCTTTT
TGCCTGTCGTCAGGATTTTCAGCGGTACAGCAGTACAGCAGTAGTGGCCG
CTGTAATATCTACAGCAGTGCCCACCGTCTTCCCTCCGGTTAGATTAAAT
AAGGTGTGCTATTAGTGCGCACGCTCGACCTATTTCCAACGGGCGACGCA
ATCCAATGCTCAATGTATTGAATACAACCCTTTTTTTTCGTACTGTAAAC
ACAGCCTTTATCCTCTCATGCCCGACCCGCTCATCCCACGCCGCGAACTA
CAGCACCGGCAACAGCTACGTGTTCGTGTGAAACATTTCCTCTCCAAAGC
GGCACGGGCAAGCTCCGGTTCTGGCCTTCCCTCCTCACCGATGCCGCGCA
ACGGAGGCTGTTTGAAGAGCTCACCGTCAACCCCAACCTGCTCCCTCTAG
ACCCGAAGACTGGTTGCAGCGGCGGCGGCGGCGGCGGAGACGGAAGCCCC
GGGCTCAGGGAAGACGCCGCAGCGAGGGGGAGGTGGATGCAGCGACCGAT
AAAGCTTTTCGGCAGGGAGATTCCGCAGCCCCGTCTCACTTGCTTCTACG
GGCGGAGAGGCGTTTCCTACAGGCGTGTCCTTTTTGAGTCACAACGTGTC
TCCAGTACAGTAGGTTACACAAGATACCACACCCCCTGGACCGATTTTCA
CAGCTTAAAATCACTCCACGAAGAAGATTAAGATTCACGGATAAAACCAT
CTTACGTTTTCGGAAAGCTCTCTCTCGATGAGACGACTTCAACGCCATGT
TTTCGGCGCTGACACTCTTTCTGCTGTGGAAGAAATCGGGCTCGGGAAAT
CGGTCTAAATAGGAGGTGTGTGAAATATCATGATGTCATCTACGGTAAAG
CTCGCCTGTGAGTGTTCCTGTACTTCCTGCGGGGCTAGCCAGCTGATGTT
ATCACGAGGAGAAGGCCTTCCGAGAATAGTAGGCGTGCACTTTTTTGTCC
TCTTTTTTGCCCCGGCCCTTGCAGTCTGGGGAACGCCGCCGCCCCGCCCC
CTCTCAGCCCTTTTTTCGTAAAAGATGTTGTCCCTGACGACTACTTGGTT
GTATGCATACCACTTTTTTCTTCGACGCGTTTTTCTGTTGTTGTTCAGGT
ACAGCGGGAAAACTCTCGAAGCCACCCCTTGGAACGGCGTGCCGGCCATC
CAGGAGATTCTAGCCGCCGCGGAAGCCGCGGCCGGGGTTGACCCCGGCTA
CTTCAATTGCGTCCTCCTCAACTGGTACCGGGACGGAGCCGACTACATGG
GGTGGCACTCCGGTGAGAGACGTGACTAACGGGGCCGGCGGCGGCGGCAC
TCACAGTTTTTGTTTTTTTTTGCTCACTTTAAATAGATCAGCGCTCACAG
AATTTACTGCCGGGAATGAGGTCCAATCCGTGGTCACACTCTCGTACATA
ATGATACACGATGTACAGCAGCATTGTAAAGCACGAAGGCGTACTGGGGT
GTGTGTTCGTGCGCACCCAGGTGGCAAAAGACAGTCTACGTGGTCGTCGT
TTACTTTTTCCCACCCAATCGACACACCATTGGTCAACCGACCCTTCCAG
GTTGAGGACAGCGCTCTTTCTTTTCCGAGTTGCGTTGCGAAACCGAGGTT
GCACACGGCTGTGCGGCAACAAAAAATAATCACGTGGGCCGGCACCTGGC
CTCAAGAACGCTGCAGATAGACGTGAGCCTTCGGTCGGCCAGTCCGTTTT
TTGCTGTGGTTCTGGCATCTATGTGCCGTTTTGATTACGTTCTGCACACC
CCCACGACAACGCTGCATGTGGCGTCGGCAAGATGATGAAAAGGAGCTCG
AGAAGGGAGCAGCGATAGCGTCCGTTTCGCTCGGAGCGGGGCGACGGTTT
CAGCTGCGACGAAAAAAGGACCACACCCAAAAGGTGGGTGGCTTGTGGTT
GAACGCGTAGGCCGTGCAGAGCGAGTGCACTCCGCGCCGTTACTCCTTCC
CTCGCCACTCCCCCCGCACCTCCTCCTGTCTACGAAAATCCTCATCATCG
GCGCATGTCTCGCATGCCTCCCAACCTTAGACGCATCGACGGTAGCTCGA
TTGTCGACGTCCATCAACGCCTGGGCCTCTGTTTGGTTGGTGTCTGAAGC
AAAAAGAAAGGTCTTTGCCATGGCAGAGTATGGTAGTTTAGGGTGTTTGA
GGCGCGGACAGCTTGCTGTCAGAGCCGCAGGGAGAAAACGTTTTTTAAAC
CCAGGATACCACCAAGGGCAGGGAAGCAGAAGATCTGGAAAGAGAACCAG
CCCGTTTTGTTCTTGGCGAGACAACACCAACGACAACGACAACGACAACG
ACAACGACCACAATTCTCCGTTTGCAGATGGAGTTTGTCCTGGGGGGAGG
GTCACTGCTCCTCATGGAAGGCAACACCCAAGAGCACTGGCAGCACCGCG
TGCCGAAGCGCACGGCGAAGGAGGAGCGCGAGATCCGGCAATCACCACAA
GAAAGAAGAGAGGCGAAAGCCTTGTCGCCACTGCTGCTGTCATGGTCGGG
GCAAGGCGGCAAGGAGTCGTCGTCGTTGAACACGGGCGAATCCGCCGGAG
GAAATGGAAGCATCGCGGGTGGTCGGGGAGGTTCGTCGTTGCTGACATCG
TCGGCAGGTGCAAGGGGAGGGAGGATCAACCTGACGTTTAGACGAATCAA
AGAAGGCGTTTCATGAGGGTTGGATACTGGATTGTTTTTTTTATCCCCGA
GGTTGGGGGGAGAGTCGTTTGTTTTGAGCTGTGGTATATTTATTGGAAGC
GACACCGTGAGGCAGCCCGGCACGCCTCAAGGAATATGGTTCACCTGTCA
ATAACCGCCGCAGAAGAAACACATCAGAAAGGTGCGTACCATGTCGGCGG
CGGAAGGCGAGCCCCGCAATGCACGAGACAGGGAATCTTGCTTTGTCGTG
GATATATGTACCGGCAACAGGGAGTAAGCAGCAGCAGCGGCGGCGACAGG
CCCCTTTTGAGCCGGGGGTAACGCAAGCCGGATACACTGCGGTGGATGGG
TAGAACGACTCTCTTTCTCGCCATCGAGGAGCGGATGGAGCTATGCGTAC
ATTCCCCCGCAGAACCAACCAGGTAGGGCATCGTGTTGCTGTGCATGCTA
CCGCTGGTGGTGCAGCTGTCGTACACAAAACCGCTCGGAATCAATGCCGT
ACGCACACCGGACGGTTATGTGAGGGACTTCAAAATTGCCATGTGCTGGC
GAACAAAAACAAAACATGATGCCATGAT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1194:22577..26004-

>mRNA_E-siliculosus-1a_F_contig1194.1234.1 ID=mRNA_E-siliculosus-1a_F_contig1194.1234.1|Name=mRNA_E-siliculosus-1a_F_contig1194.1234.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2082bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1194:22577..26004- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCTTCGGCAGAGGGAAAGCGAGGAAGATCTTCTCGGCCGAATGAACA
GGTTGGAGCCAAGCGACGGTGGGGCGGAAGTTCCAGCTCTTCACAGCCCA
AGGATGTCTTCGGCAGAGGGAAAGCGAGGAAGATCTTCTCGGCCGAATGA
ACAGGTTGGAGCCAAGCGACGGTGGGGCGGAAGTTCCAGCTCTTCACAGC
CCAAGGCACCGGCAACAGCTACGTGTTCGTGTGAAACATTTCCTCTCCAA
AGCGGCACGGGCAAGCTCCGGTTCTGGCCTTCCCTCCTCACCGATGCCGC
GCAACGGAGGCTGTTTGAAGAGCTCACCGTCAACCCCAACCTGCTCCCTC
TAGACCCGAAGACTGGTTGCAGCGGCGGCGGCGGCGGCGGAGACGGAAGC
CCCGGGCTCAGGGAAGACGCCGCAGCGAGGGGGAGGTGGATGCAGCGACC
GATAAAGCTTTTCGGCAGGGAGATTCCGCAGCCCCGTCTCACTTGCTTCT
ACGGGCGGAGAGGCGTTTCCTACAGGCGTGTCCTTTTTGACACCGGCAAC
AGCTACGTGTTCGTGTGAAACATTTCCTCTCCAAAGCGGCACGGGCAAGC
TCCGGTTCTGGCCTTCCCTCCTCACCGATGCCGCGCAACGGAGGCTGTTT
GAAGAGCTCACCGTCAACCCCAACCTGCTCCCTCTAGACCCGAAGACTGG
TTGCAGCGGCGGCGGCGGCGGCGGAGACGGAAGCCCCGGGCTCAGGGAAG
ACGCCGCAGCGAGGGGGAGGTGGATGCAGCGACCGATAAAGCTTTTCGGC
AGGGAGATTCCGCAGCCCCGTCTCACTTGCTTCTACGGGCGGAGAGGCGT
TTCCTACAGGCGTGTCCTTTTTGAGTACAGCGGGAAAACTCTCGAAGCCA
CCCCTTGGAACGGCGTGCCGGCCATCCAGGAGATTCTAGCCGCCGCGGAA
GCCGCGGCCGGGGTTGACCCCGGCTACTTCAATTGCGTCCTCCTCAACTG
GTACCGGGACGGAGCCGACTACATGGGGTGGCACTCCGGTACAGCGGGAA
AACTCTCGAAGCCACCCCTTGGAACGGCGTGCCGGCCATCCAGGAGATTC
TAGCCGCCGCGGAAGCCGCGGCCGGGGTTGACCCCGGCTACTTCAATTGC
GTCCTCCTCAACTGGTACCGGGACGGAGCCGACTACATGGGGTGGCACTC
CGATGATGAAAAGGAGCTCGAGAAGGGAGCAGCGATAGCGTCCGTTTCGC
TCGGAGCGGGGCGACGGTTTCAGCTGCGACGAAAAAAGGACCACACCCAA
AAGATGATGAAAAGGAGCTCGAGAAGGGAGCAGCGATAGCGTCCGTTTCG
CTCGGAGCGGGGCGACGGTTTCAGCTGCGACGAAAAAAGGACCACACCCA
AAAGATGGAGTTTGTCCTGGGGGGAGGGTCACTGCTCCTCATGGAAGGCA
ACACCCAAGAGCACTGGCAGCACCGCGTGCCGAAGCGCACGGCGAAGGAG
GAGCGCGAGATCCGGCAATCACCACAAGAAAGAAGAGAGGCGAAAGCCTT
GTCGCCACTGCTGCTGTCATGGTCGGGGCAAGGCGGCAAGGAGTCGTCGT
CGTTGAACACGGGCGAATCCGCCGGAGGAAATGGAAGCATCGCGGGTGGT
CGGGGAGGTTCGTCGTTGCTGACATCGTCGGCAGGTGCAAGGGGAGGGAG
GATCAACCTGACGTTTAGACGAATCAAAGAAGGCGTTTCATGAATGGAGT
TTGTCCTGGGGGGAGGGTCACTGCTCCTCATGGAAGGCAACACCCAAGAG
CACTGGCAGCACCGCGTGCCGAAGCGCACGGCGAAGGAGGAGCGCGAGAT
CCGGCAATCACCACAAGAAAGAAGAGAGGCGAAAGCCTTGTCGCCACTGC
TGCTGTCATGGTCGGGGCAAGGCGGCAAGGAGTCGTCGTCGTTGAACACG
GGCGAATCCGCCGGAGGAAATGGAAGCATCGCGGGTGGTCGGGGAGGTTC
GTCGTTGCTGACATCGTCGGCAGGTGCAAGGGGAGGGAGGATCAACCTGA
CGTTTAGACGAATCAAAGAAGGCGTTTCATGA
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