mRNA_E-siliculosus-1a_F_contig1193.1232.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1193.1232.1
Unique NamemRNA_E-siliculosus-1a_F_contig1193.1232.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1193.1232.1 vs. uniprot
Match: D7FHG3_ECTSI (40S ribosomal protein S8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHG3_ECTSI)

HSP 1 Score: 355 bits (911), Expect = 1.790e-122
Identity = 176/178 (98.88%), Postives = 176/178 (98.88%), Query Frame = 1 
Query:    1 MGRPAANTKLGHKRVHPVRCRGGNMKYRALRLDSGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVTIGLKKGKKAAPVEEEAVAKSDHVKRKLAKRQADRTLSTLLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAKKKSK 534
            MGRPAANTKLGHKRVHPVRCRGGNMKYRALRLDSGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGV IGLKKGKKAAPVEEEAVAKSDHVKRKLAKRQ DRTLSTLLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAKKKSK
Sbjct:   29 MGRPAANTKLGHKRVHPVRCRGGNMKYRALRLDSGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVVIGLKKGKKAAPVEEEAVAKSDHVKRKLAKRQTDRTLSTLLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAKKKSK 206
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BLAST of mRNA_E-siliculosus-1a_F_contig1193.1232.1 vs. uniprot
Match: A0A836CLT8_9STRA (40S ribosomal protein S8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLT8_9STRA)

HSP 1 Score: 276 bits (706), Expect = 3.460e-91
Identity = 136/183 (74.32%), Postives = 154/183 (84.15%), Query Frame = 1 
Query:    1 MGRPAANTKLGHKRVHPVRCRGGNMKYRALRLDSGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVTIGLKKGK-----KAAPVEEEAVAKSDHVKRKLAKRQADRTLSTLLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAKKKSK 534
            +GRPAANTK+G  R+  VRCRGGN+K+RALRL++GN+SWGTEVCTRKTRILDVVYNASNNELVRTKTLVK A+V +DA PF+ WYE HYG+ IG+KKGK     KAA   +E   KSDHV+RKLA RQ  R L TLLDEQ ASGR LACISSRPGQSGRCDGYILEGKELEFYQK+L++KK K
Sbjct:   29 LGRPAANTKMGATRIRTVRCRGGNLKFRALRLETGNYSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKGAVVSIDATPFRQWYEAHYGIAIGVKKGKRAAAGKAAATTDEEAKKSDHVQRKLAARQKTRALDTLLDEQFASGRILACISSRPGQSGRCDGYILEGKELEFYQKILSRKKGK 211
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BLAST of mRNA_E-siliculosus-1a_F_contig1193.1232.1 vs. uniprot
Match: A0A7S2USH6_9STRA (40S ribosomal protein S8 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USH6_9STRA)

HSP 1 Score: 271 bits (694), Expect = 4.370e-89
Identity = 135/179 (75.42%), Postives = 149/179 (83.24%), Query Frame = 1 
Query:    1 MGRPAANTKLGHKRVHPVRCRGGNMKYRALRLDSGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVTIGLKKGK---KAAPVEEEAVAKSDHVKRKLAKRQADRTLSTLLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAKKK 528
            MGRPAANTKLG KRVHPVRC GGNMKYRA+RL++G +SWGTE  +RK RILDVVYNASNNELVRTKTLVKNA+V++DAHPFK WYE HYGV IG KKGK   K    ++E   KS HV+RK+AKRQ DRTL   LD+Q   GR LACISSRPGQSGR DGYILEGKELEFYQKMLA+KK
Sbjct:   49 MGRPAANTKLGTKRVHPVRCMGGNMKYRAMRLEAGTYSWGTEAISRKARILDVVYNASNNELVRTKTLVKNAVVLIDAHPFKAWYEAHYGVVIGKKKGKRMPKKDEADDEDAKKSSHVQRKIAKRQKDRTLMQNLDDQFVGGRLLACISSRPGQSGRADGYILEGKELEFYQKMLARKK 227
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BLAST of mRNA_E-siliculosus-1a_F_contig1193.1232.1 vs. uniprot
Match: A0A812SFI7_SYMMI (40S ribosomal protein S8 n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SFI7_SYMMI)

HSP 1 Score: 264 bits (674), Expect = 2.200e-86
Identity = 127/176 (72.16%), Postives = 147/176 (83.52%), Query Frame = 1 
Query:    1 MGRPAANTKLGHKRVHPVRCRGGNMKYRALRLDSGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVTIGLKKGKKAAPVEEEAVAKSDHVKRKLAKRQADRTLSTLLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAKKK 528
            +GRP ANTKLG  R+H VRCRGGN+K+RA+RLD+GNFSWG+EVCTRKTR+LDVVYNASNNELVRTKTLVKN+I+ VDA PF+ WYE HYGV +G+KK KK A   E+   KS  ++RKLA+RQ  RTL   LD+  +SGR LACISSRPGQSGRCDGYILEGKEL+FY KML KKK
Sbjct:   29 LGRPPANTKLGASRIHTVRCRGGNLKFRAMRLDTGNFSWGSEVCTRKTRVLDVVYNASNNELVRTKTLVKNSIIQVDATPFRAWYEQHYGVKVGVKKAKKTAAEGEDTEKKSHSLQRKLAERQKTRTLDPALDDGFSSGRLLACISSRPGQSGRCDGYILEGKELDFYSKMLKKKK 204
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BLAST of mRNA_E-siliculosus-1a_F_contig1193.1232.1 vs. uniprot
Match: A0A7S1Z304_TRICV (40S ribosomal protein S8 n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z304_TRICV)

HSP 1 Score: 261 bits (666), Expect = 2.950e-85
Identity = 130/175 (74.29%), Postives = 146/175 (83.43%), Query Frame = 1 
Query:    1 MGRPAANTKLGHKRVHPVRCRGGNMKYRALRLDSGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVTIGLKKGKKAAPVEEEAVAKSDHVKRKLAKRQADRTLSTLLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAKK 525
            +GRPAA TK+G KRVH VRCRGGN+K+RALRLDSGNFSWGTEVCTRK RILDV YNASNNELVRTKTLVK AIV++DAHPFK WYE HYGV IG+KKG+KA   +EEA  KS+ V+RKLA RQ +RTL   LD Q ASGR LA I+SRPGQ GRCDG +LEG EL FYQ+ +AKK
Sbjct:   29 LGRPAAMTKIGEKRVHEVRCRGGNLKFRALRLDSGNFSWGTEVCTRKVRILDVTYNASNNELVRTKTLVKGAIVLIDAHPFKEWYEAHYGVKIGVKKGQKAH-ADEEAPKKSERVQRKLAARQKNRTLEQPLDHQFASGRLLAKITSRPGQCGRCDGVVLEGAELHFYQRQMAKK 202
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BLAST of mRNA_E-siliculosus-1a_F_contig1193.1232.1 vs. uniprot
Match: B8CB96_THAPS (40S ribosomal protein S8 n=2 Tax=Ochrophyta TaxID=2696291 RepID=B8CB96_THAPS)

HSP 1 Score: 260 bits (665), Expect = 3.920e-85
Identity = 129/174 (74.14%), Postives = 145/174 (83.33%), Query Frame = 1 
Query:    1 MGRPAANTKLGHKRVHPVRCRGGNMKYRALRLDSGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVTIGLKKGKKAAPVEEEAVAKSDHVKRKLAKRQADRTLSTLLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAK 522
            +GRPAA TK+G KR+H VRCRGGN+K+RALRLDSGNFSWGTEVCTRK R+LDVVYNASNNELVRTKTLVK AIV+VDAHPFK WYE+HYGV IG+KKG+ AA  EEE V +S HV+RKLA RQ  R+L   +D Q+ASGR  A I+SRPGQSGRCDG ILEG EL FY K L K
Sbjct:   29 LGRPAAMTKIGEKRIHTVRCRGGNLKFRALRLDSGNFSWGTEVCTRKVRVLDVVYNASNNELVRTKTLVKGAIVLVDAHPFKSWYESHYGVKIGIKKGQAAA--EEEEVKQSSHVQRKLAARQKGRSLEDAIDHQIASGRLYAKITSRPGQSGRCDGQILEGAELSFYLKQLKK 200
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BLAST of mRNA_E-siliculosus-1a_F_contig1193.1232.1 vs. uniprot
Match: A0A7S2JRG2_9STRA (40S ribosomal protein S8 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JRG2_9STRA)

HSP 1 Score: 260 bits (664), Expect = 5.750e-85
Identity = 131/175 (74.86%), Postives = 144/175 (82.29%), Query Frame = 1 
Query:    1 MGRPAANTKLGHKRVHPVRCRGGNMKYRALRLDSGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVTIGLKKGKKAAPVEEEAVAKSDHVKRKLAKRQADRTLSTLLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAKK 525
            MGRPAA TK+G KRV  VRCRGGNMKYRALRLD+GNFSWGTEVCTRK RILDV YNASNNELVRTKTLVK AIV+VD HPFK WYE+HYGV  GL+  K   PV+E+   KS+HV+RKLA RQ  R+L   LD Q+ASGRFLA I+SRPGQSGRCDG ILEG EL FYQKM+ KK
Sbjct:   29 MGRPAAMTKIGEKRVREVRCRGGNMKYRALRLDTGNFSWGTEVCTRKVRILDVTYNASNNELVRTKTLVKGAIVLVDCHPFKTWYESHYGVKTGLRGAK--PPVDEDEAKKSNHVQRKLAARQKTRSLEPTLDSQLASGRFLAKITSRPGQSGRCDGVILEGPELAFYQKMMHKK 201
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BLAST of mRNA_E-siliculosus-1a_F_contig1193.1232.1 vs. uniprot
Match: A0A6V2QD30_HETAK (40S ribosomal protein S8 n=2 Tax=Sar TaxID=2698737 RepID=A0A6V2QD30_HETAK)

HSP 1 Score: 260 bits (664), Expect = 6.580e-85
Identity = 132/176 (75.00%), Postives = 146/176 (82.95%), Query Frame = 1 
Query:    1 MGRPAANTKLGHKRVHPVRCRGGNMKYRALRLDSGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVTIGLKKGKKAAPVEEEAVAKSDHVKRKLAKRQADRTLSTLLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAKKK 528
            +GR +ANTKLG KRVH VRC GGN K+RA+RL++G FSWGTE  +RKT+ILDVVYNASNNELVRTKTLVK AI+ +DA P + WYE HYGV IG KKGKKAA  EEEAVAKS HV RK A+R   RTL  LLDEQ A+GR LA ISSRPGQSGRCDGY+LEGKELEFYQK LAKKK
Sbjct:   29 LGRQSANTKLGAKRVHEVRCMGGNKKFRAIRLETGTFSWGTEAISRKTKILDVVYNASNNELVRTKTLVKGAIISIDAAPLRQWYEQHYGVQIGKKKGKKAA-AEEEAVAKSSHVARKQAQRCKTRTLDPLLDEQFANGRLLASISSRPGQSGRCDGYVLEGKELEFYQKQLAKKK 203
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BLAST of mRNA_E-siliculosus-1a_F_contig1193.1232.1 vs. uniprot
Match: B7FP80_PHATC (40S ribosomal protein S8 n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FP80_PHATC)

HSP 1 Score: 259 bits (661), Expect = 1.880e-84
Identity = 126/177 (71.19%), Postives = 147/177 (83.05%), Query Frame = 1 
Query:    1 MGRPAANTKLGHKRVHPVRCRGGNMKYRALRLDSGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVTIGLKK--GKKAAPVEEEAVAKSDHVKRKLAKRQADRTLSTLLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAKK 525
            +GRPAA TK+G  R+HPVRCRGGNMK+RALRLDSGNFSWGTEVCTRK R+LDV YNASNNELVRTKTLVK AIV++DAHPFK+WY++HYGVTIGLKK  G+       +   KS  V++KL  RQA+R+L ++LD Q ASGR LA I+SRPGQ+GRCDGYILEG EL FYQK +AKK
Sbjct:   29 LGRPAAMTKIGEPRIHPVRCRGGNMKFRALRLDSGNFSWGTEVCTRKVRVLDVTYNASNNELVRTKTLVKGAIVLIDAHPFKNWYDSHYGVTIGLKKTGGEDRTQPSVDLTEKSTQVQKKLKSRQANRSLDSVLDHQFASGRLLAKITSRPGQTGRCDGYILEGAELAFYQKQMAKK 205
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BLAST of mRNA_E-siliculosus-1a_F_contig1193.1232.1 vs. uniprot
Match: A0A6U3PIT0_9STRA (40S ribosomal protein S8 n=3 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A6U3PIT0_9STRA)

HSP 1 Score: 256 bits (655), Expect = 1.300e-83
Identity = 128/175 (73.14%), Postives = 144/175 (82.29%), Query Frame = 1 
Query:    1 MGRPAANTKLGHKRVHPVRCRGGNMKYRALRLDSGNFSWGTEVCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVTIGLKKGKKAAPVEEEAVAKSDHVKRKLAKRQADRTLSTLLDEQVASGRFLACISSRPGQSGRCDGYILEGKELEFYQKMLAKK 525
            MGRPAA TK+G KRVH VR RGGNMK+RALRLDSGNFSWGTEVCTRK R+LDV YNASNNELVRTKTLVK AIV++DAHPFK WYE+HYG+ IG+KKG  A    ++ V KSDHV+RKLA RQ  R L   +D Q+ASGR LA I+SRPGQSGRCDG +LEG EL FYQKM+ KK
Sbjct:   29 MGRPAAMTKIGEKRVHGVRGRGGNMKWRALRLDSGNFSWGTEVCTRKVRVLDVTYNASNNELVRTKTLVKGAIVLIDAHPFKSWYESHYGLKIGVKKGSTAL---DDDVKKSDHVQRKLASRQKGRELEQAIDNQMASGRLLAKITSRPGQSGRCDGIVLEGAELHFYQKMMHKK 200
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1193.1232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHG3_ECTSI1.790e-12298.8840S ribosomal protein S8 n=2 Tax=Ectocarpus TaxID=... [more]
A0A836CLT8_9STRA3.460e-9174.3240S ribosomal protein S8 n=1 Tax=Tribonema minus T... [more]
A0A7S2USH6_9STRA4.370e-8975.4240S ribosomal protein S8 n=1 Tax=Fibrocapsa japoni... [more]
A0A812SFI7_SYMMI2.200e-8672.1640S ribosomal protein S8 n=1 Tax=Symbiodinium micr... [more]
A0A7S1Z304_TRICV2.950e-8574.2940S ribosomal protein S8 n=1 Tax=Trieres chinensis... [more]
B8CB96_THAPS3.920e-8574.1440S ribosomal protein S8 n=2 Tax=Ochrophyta TaxID=... [more]
A0A7S2JRG2_9STRA5.750e-8574.8640S ribosomal protein S8 n=1 Tax=Leptocylindrus da... [more]
A0A6V2QD30_HETAK6.580e-8575.0040S ribosomal protein S8 n=2 Tax=Sar TaxID=2698737... [more]
B7FP80_PHATC1.880e-8471.1940S ribosomal protein S8 n=2 Tax=Phaeodactylum tri... [more]
A0A6U3PIT0_9STRA1.300e-8373.1440S ribosomal protein S8 n=3 Tax=Lithodesmiaceae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1193contigE-siliculosus-1a_F_contig1193:15276..19289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size537
Model size722
Exons5
Ec32 orthologEc-25_002510.1
Ec32 ortholog descriptionRibosomal protein S8e/ribosomal biogenesis NSA2
Hectar predicted targeting categoryother localisation
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EggNOG OGsCOG2007@1,KOG3283@2759
EggNOG free text desc.structural constituent of ribosome
GOsGO:0000184,GO:0000313,GO:0000462,GO:0000956,GO:0002164,GO:0002181,GO:0002182,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006414,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009532,GO:0009536,GO:0009547,GO:0009570,GO:0009790,GO:0009791,GO:0009792,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030054,GO:0030097,GO:0030312,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035166,GO:0035167,GO:0042254,GO:0042255,GO:0042274,GO:0042788,GO:0042886,GO:0043009,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043253,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048519,GO:0048534,GO:0048542,GO:0048569,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051726,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
KEGG ModuleM00177,M00179
KEGG Pathwayko03010,map03010
KEGG koko:K02995
Preferred nameRPS8
Seed eggNOG ortholog2880.D7FHG3
Seed ortholog evalue1.1e-95
Seed ortholog score355.9
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1193.1232.1prot_E-siliculosus-1a_F_contig1193.1232.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1193 15461..19289 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927711.6040459-UTR-E-siliculosus-1a_F_contig1193:15275..154601622927711.6040459-UTR-E-siliculosus-1a_F_contig1193:15275..15460Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1193 15276..15460 -
1696318649.6397073-UTR-E-siliculosus-1a_F_contig1193:15275..154601696318649.6397073-UTR-E-siliculosus-1a_F_contig1193:15275..15460Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1193 15276..15460 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927711.6203759-CDS-E-siliculosus-1a_F_contig1193:15460..155441622927711.6203759-CDS-E-siliculosus-1a_F_contig1193:15460..15544Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1193 15461..15544 -
1696318649.6526659-CDS-E-siliculosus-1a_F_contig1193:15460..155441696318649.6526659-CDS-E-siliculosus-1a_F_contig1193:15460..15544Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1193 15461..15544 -
1622927711.6320283-CDS-E-siliculosus-1a_F_contig1193:16411..165431622927711.6320283-CDS-E-siliculosus-1a_F_contig1193:16411..16543Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1193 16412..16543 -
1696318649.6637967-CDS-E-siliculosus-1a_F_contig1193:16411..165431696318649.6637967-CDS-E-siliculosus-1a_F_contig1193:16411..16543Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1193 16412..16543 -
1622927711.6446605-CDS-E-siliculosus-1a_F_contig1193:17426..175221622927711.6446605-CDS-E-siliculosus-1a_F_contig1193:17426..17522Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1193 17427..17522 -
1696318649.6832652-CDS-E-siliculosus-1a_F_contig1193:17426..175221696318649.6832652-CDS-E-siliculosus-1a_F_contig1193:17426..17522Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1193 17427..17522 -
1622927711.6564121-CDS-E-siliculosus-1a_F_contig1193:17969..180671622927711.6564121-CDS-E-siliculosus-1a_F_contig1193:17969..18067Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1193 17970..18067 -
1696318649.6996672-CDS-E-siliculosus-1a_F_contig1193:17969..180671696318649.6996672-CDS-E-siliculosus-1a_F_contig1193:17969..18067Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1193 17970..18067 -
1622927711.6706727-CDS-E-siliculosus-1a_F_contig1193:19162..192891622927711.6706727-CDS-E-siliculosus-1a_F_contig1193:19162..19289Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1193 19163..19289 -
1696318649.7088194-CDS-E-siliculosus-1a_F_contig1193:19162..192891696318649.7088194-CDS-E-siliculosus-1a_F_contig1193:19162..19289Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1193 19163..19289 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1193.1232.1

>prot_E-siliculosus-1a_F_contig1193.1232.1 ID=prot_E-siliculosus-1a_F_contig1193.1232.1|Name=mRNA_E-siliculosus-1a_F_contig1193.1232.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=179bp
MGRPAANTKLGHKRVHPVRCRGGNMKYRALRLDSGNFSWGTEVCTRKTRI
LDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVTIGLKKGKK
AAPVEEEAVAKSDHVKRKLAKRQADRTLSTLLDEQVASGRFLACISSRPG
QSGRCDGYILEGKELEFYQKMLAKKKSK*
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mRNA from alignment at E-siliculosus-1a_F_contig1193:15276..19289-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1193.1232.1 ID=mRNA_E-siliculosus-1a_F_contig1193.1232.1|Name=mRNA_E-siliculosus-1a_F_contig1193.1232.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4014bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1193:15276..19289- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGGCGCCCCGCGGCCAACACCAAGCTCGGCCACAAGCGCGTCCACCC
CGTGCGTTGCCGCGGCGGCAACATGAAGTACCGCGCGCTCAGGCTCGACA
GCGGCAACTTCAGCTGGGGAACGGAGGGTGAGCCGATGTGTACGGCCTGG
TTTTGTTGGTGGTTCGCCGCAGTCAGTGTAGATCCTGATGGGATTGTTGT
GACAAGTGTCTAGGTTGGTTAACACTTCTTGGGCAATAGAAACGAGTCAA
GTTCGATGGCGAAAGAATCACCTCTTGTGAGCACACGACATCGGTTTTTT
TACCGCATGGCTGCGTTGAGTCTGATCCCATGGAGTAAATCGGACGGTAG
TAGTGAAAACGTGTGCCGCAAGACCATGATGTCCCACGTATATCGGACGG
TAACAGTGAAAACGTGTGCCGCAAGACCGTGGCGTGAAGCGATGATCGTA
AAAACTTGGCGCCCTCGTGGTTTGAGTCTCCGCTCTCTTGGGCTCTTTCC
TGAGCGGCAAGAGGCGTGCAGATTCGCCACACGAGCAGCGGCGCTCTTCG
ACTTGACAGTGAAGACGTTCAAGCGACCATACTCTATGAGCTTCACGACG
TGCGTCAGTAGAACAGTAGAATAGCAGCATTGCATGCATACATACATCCA
TAACTTTGCGAATTGTAGCAGCGCGATGTCCACAAGACACGCGGGCAAGA
CGATTAGGGATAGTAATCCCCCCTGTGTTTTGTAACGGTGTTTGCTCGGT
TGGACTCTGCGGGTGGCTGGCGAATCCTGTAGAGGTGTTGCGGCCATAGC
AACCTGTGCTTCCCGTCTTTGGACCGAAATCTCCAAGTTTCCTGTGGACT
TGACGGCGCAATGTGCTCGCTGCACCATGAGTACAAGATCGCAAATGTCT
CGGTGGAAGGAAGGCTTGTTCCTGGCGCGGTGTAAAATTCGTCGCTGGTG
TTGCGAGAGACTCTTGATCGATCTTGAAAGTAGGTGCCTCCCCACAAACG
CCAGGATTATTGGGTGCGATCCACCAACAGCCGCCCATTTGAAAGACAAA
ACCGTTGTGCGTACAGCCCCAAGCTTTTTCTCCGTGCTGCTGACACGACT
TATTGTGCTCTGTCCTGGCGTTGCTCTGTTTGACTCGAGGCCTAAGCTCT
TTCAAAATAATTCCCGCGCGCTCGTCTTTCCCTCCTTGGATCGAACCTCT
GACAACGCCCCTTCATGACCAGTGTGCACCCGCAAGACCCGTATCCTCGA
CGTCGTCTACAACGCCAGCAACAACGAGCTGGTCCGCACCAAGACCCTCG
TCAAAAACGCCATCGTCGTGGTGAGTCTCTACAAGGGTGGTGCAGCATAT
ATATGCATATGGTGCCGGTGTTTCGGTAACCTATGAATGTTGCGGCATTA
TCCTTCCGTTACCGGGGGGTCCACCGTTCCGTATGGGTTAGTGCCAGAAA
GATGTAGACCAACGGACATTTTGTTGCCTCAAAGCTGGTGTAGAATCGCA
AGACCTCCTGTGCCGGACAGTCTGCCTTTATGGTTGACGCCAGTAGTGAA
CCAACGGATGTGTGCCGCCTCAAAGTTGATGTCGGATCGTAAGAGCTCTT
TCCCTCTCCATCAAGTCTGCGGTTACGGATGGTTGGCGCGTAGTGAAACG
ACGGATATTTGCCGCCTCAAAAGTCAATATAGCATGGCGATAGGCTCCTC
CCCCTCTCCGGAGAACCGGCCCTCTGACGGATGGATTTGTTTTGACGTTA
CGTGTTCGGCCTCCCAGGTTGACGCCCACCCCTTCAAGCACTGGTACGAG
AACCACTACGGTGTCACCATCGGGCTCAAGAAGGGCAAGAAGGCGGCCCC
CGTGGAAGAGGAGGTGAGGGATCGATTCGTAGATCCAACACAAGATTGCG
CTTGGTTTTGATTGGGTTGTTGTTTGGCCTCTTGGAGCACACACCCCCCT
ACGAGACGCTCCCTTCACCACCTGTTGTGTCGAACACCGATCAACTTTGT
GTTCACGCGTGGTTTGTTGTTTGCTATTGAGGGTACACCCGCCGTCCTCC
GGGGTGCTTTAACTCCTTGGTATTAACACCACCTGTACAGAACAAAATTG
GTCACCGTTGTGCATGTATTTCTGCTGGTGAGCGGATTGTGCAGTTTGTT
CGTCATGGTGGCTTAACGCTTTCGTGGAACAACCGTTCGAGAGAGGCACT
TCCTTGTGTCAAGACATGCTGTGTTTTTCTCGACGTAAAGAGACTCGTGC
GAGTCTTTGATGCGATCCTCTTGTTTCCCTGGCGAAACGTTGGCCCGCCC
TTCCCCCTGAAATAGTGCGGTAGACCCTATCGCTACGTCCGGACAGTTCG
ACGAATTTCCAGATAAACAACCGGTTGAACTTCTGGTACCGTTATTTTTT
GTCAATCCAGGCAAAGGCTTCACGTGAACCTTAGCCATAACGTGCACACA
TGGTATTGTTGGACATGGTGTATCACAAATCATGGAAAGTGTTGTGGACG
CCACAATGGGTTCGACATACTCGCTTAACCCAGATTTTTTTTTTCTTTCT
TTTTGTGACGTACAACCCCTATGATCGGACAAGATCTTGACAATATACCA
TCACAAGACCGCCGTGCTTCCCTTCGGTGCTGATGCAACGGGCGCAGAGC
AACGCCGCGAATGCGTATGCTCCAACTGCTTCGATGGTTTTGCTGTCGTC
AGCGTGCCTCTCATATCTTCTCCGTTTTTTTTCGTTCCACGTGCAGGCCG
TGGCCAAGTCTGACCACGTCAAGCGCAAGCTGGCCAAGCGCCAGGCGGAC
CGCACCCTGAGCACGCTCCTCGATGAGCAGGTGGCGTCTGGCCGCTTCCT
CGCGTGCATCTCTTCTCGCCCCGGCCAGGTCAGTGTTGCGGCACGATGAG
GACCTCTCCAATGTGTTACTGTTTTTTTTTTCAGGAAATATACACTCCAA
AGAGACATCCGTTCGACATATAACCACAGCAGTAGTCAAAGAGATTATTT
TTTTAAAAGAAAAGATGCACAAAGAAACGCAGAAAGACTACCGGTTTGAG
ATATAAAACGACAGTCAGGTCTAAAGGGATGTGCGGAAGTCTTGTCATTG
AAAGGAAACCGGCTGGAAGCTGGGCTTTTTGTACTGGCATGCGTTGTTAA
TCGTGCTTTTTTTACCGAGGCTGTATATACTTCGTCGTTCATCGGCTTGT
ATCGAGCCGGAGGAGAATACTTCCGTGATTGGAGATGGCTACAGACTCAA
CCTGAGTACTGCATCAGCCGCTGAGTCACACTGCTGTTGCTCGAGTATCG
GCCTTTGTTGCTTGTGTTTGGAACGTCGGGTCAAGCCACCGTGCTCTTAC
AGTGGAATGCTTTTTGCTTGCTGTGAGAAAGAAACACGATATGGATATGC
GTATGTAGTCCCTTCCTCCCTTGGTTAATTGGCGATAGGTGCGACTGTCG
TAAAAAACAGGGCAGCGTGATTTCGCTCACCTGACCTATACGTACGTAGG
TTAGCCGTGTAGGAGCTACGGGTGAGGATTAGGATTGCAACGAACGATGA
TGGTCTCTTCCGGTTCCTTTTTTATTGGTACTCTTGGTTCGTGCTGTTTT
TTGCGCGCTCTTGTCCAGTTGCTTGCGATGCGTGTCTCCTCGTCCCGCCC
TTGGCCCCTGCCGCCATGTATGTGCATCTAACTTCGTCACCTTTGCACTC
GTTCCCCATGTTTTTGTCGTTGTTGTGTGTTCCCGTATGCGATAGTCCGG
CCGCTGCGACGGCTACATCCTGGAGGGCAAGGAGCTCGAGTTCTACCAGA
AGATGCTCGCCAAGAAGAAGTCGAAATAAATCACACGATGACCACCCCCT
TGGATATCGCGCAACGACCCGAAGAAATCGGTAGCAGTAGGAACGTGCGA
GGTTTAGCGCCATCGTTTTTGTTGGTTTCGGCACTAGCGAGGCGTTTCTC
CATGTTGCGTGCTTACGTACGTTTGATTGGGCTTTTTGTGCGGTGGGCGG
GGAAAGTTGTGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1193:15276..19289-

>mRNA_E-siliculosus-1a_F_contig1193.1232.1 ID=mRNA_E-siliculosus-1a_F_contig1193.1232.1|Name=mRNA_E-siliculosus-1a_F_contig1193.1232.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1074bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1193:15276..19289- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGGCGCCCCGCGGCCAACACCAAGCTCGGCCACAAGCGCGTCCACCC
CGTGCGTTGCCGCGGCGGCAACATGAAGTACCGCGCGCTCAGGCTCGACA
GCGGCAACTTCAGCTGGGGAACGGAGGATGGGGCGCCCCGCGGCCAACAC
CAAGCTCGGCCACAAGCGCGTCCACCCCGTGCGTTGCCGCGGCGGCAACA
TGAAGTACCGCGCGCTCAGGCTCGACAGCGGCAACTTCAGCTGGGGAACG
GAGGTGTGCACCCGCAAGACCCGTATCCTCGACGTCGTCTACAACGCCAG
CAACAACGAGCTGGTCCGCACCAAGACCCTCGTCAAAAACGCCATCGTCG
TGTGTGCACCCGCAAGACCCGTATCCTCGACGTCGTCTACAACGCCAGCA
ACAACGAGCTGGTCCGCACCAAGACCCTCGTCAAAAACGCCATCGTCGTG
GTTGACGCCCACCCCTTCAAGCACTGGTACGAGAACCACTACGGTGTCAC
CATCGGGCTCAAGAAGGGCAAGAAGGCGGCCCCCGTGGAAGAGGAGGTTG
ACGCCCACCCCTTCAAGCACTGGTACGAGAACCACTACGGTGTCACCATC
GGGCTCAAGAAGGGCAAGAAGGCGGCCCCCGTGGAAGAGGAGGCCGTGGC
CAAGTCTGACCACGTCAAGCGCAAGCTGGCCAAGCGCCAGGCGGACCGCA
CCCTGAGCACGCTCCTCGATGAGCAGGTGGCGTCTGGCCGCTTCCTCGCG
TGCATCTCTTCTCGCCCCGGCCAGGCCGTGGCCAAGTCTGACCACGTCAA
GCGCAAGCTGGCCAAGCGCCAGGCGGACCGCACCCTGAGCACGCTCCTCG
ATGAGCAGGTGGCGTCTGGCCGCTTCCTCGCGTGCATCTCTTCTCGCCCC
GGCCAGTCCGGCCGCTGCGACGGCTACATCCTGGAGGGCAAGGAGCTCGA
GTTCTACCAGAAGATGCTCGCCAAGAAGAAGTCGAAATAATCCGGCCGCT
GCGACGGCTACATCCTGGAGGGCAAGGAGCTCGAGTTCTACCAGAAGATG
CTCGCCAAGAAGAAGTCGAAATAA
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