mRNA_E-siliculosus-1a_F_contig11925.1229.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11925.1229.1
Unique NamemRNA_E-siliculosus-1a_F_contig11925.1229.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11925.1229.1 vs. uniprot
Match: D7FMM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMM5_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 1.010e-25
Identity = 47/53 (88.68%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 IKLEGDYFLIGLLSSRRKPDPGSLTPLHGSAHLGQRKAVEMLLGAGVDANLKT 159
            +KLEGDYFLIGLLSSRRKPDPGS TPLH SAH GQRKAV +LLGAGVDANLKT
Sbjct:    1 MKLEGDYFLIGLLSSRRKPDPGSFTPLHWSAHFGQRKAVAILLGAGVDANLKT 53
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11925.1229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMM5_ECTSI1.010e-2588.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11925contigE-siliculosus-1a_F_contig11925:281..1520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size162
Model size162
Exons2
Ec32 orthologEc-23_000890.1
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927711.337901-CDS-E-siliculosus-1a_F_contig11925:280..3451622927711.337901-CDS-E-siliculosus-1a_F_contig11925:280..345Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11925 281..345 +
1696318649.5542731-CDS-E-siliculosus-1a_F_contig11925:280..3451696318649.5542731-CDS-E-siliculosus-1a_F_contig11925:280..345Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11925 281..345 +
1622927711.3593838-CDS-E-siliculosus-1a_F_contig11925:1423..15201622927711.3593838-CDS-E-siliculosus-1a_F_contig11925:1423..1520Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11925 1424..1520 +
1696318649.561806-CDS-E-siliculosus-1a_F_contig11925:1423..15201696318649.561806-CDS-E-siliculosus-1a_F_contig11925:1423..1520Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11925 1424..1520 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11925.1229.1prot_E-siliculosus-1a_F_contig11925.1229.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11925 281..1520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11925.1229.1

>prot_E-siliculosus-1a_F_contig11925.1229.1 ID=prot_E-siliculosus-1a_F_contig11925.1229.1|Name=mRNA_E-siliculosus-1a_F_contig11925.1229.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=54bp
IKLEGDYFLIGLLSSRRKPDPGSLTPLHGSAHLGQRKAVEMLLGAGVDAN
LKT*
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mRNA from alignment at E-siliculosus-1a_F_contig11925:281..1520+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11925.1229.1 ID=mRNA_E-siliculosus-1a_F_contig11925.1229.1|Name=mRNA_E-siliculosus-1a_F_contig11925.1229.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1240bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11925:281..1520+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATAAAGCTCGAGGGAGATTACTTCCTTATCGGTCTCCTGTCCAGCAGGCG
AAAGCCAGATCCTGGGTAAGTTTCTTGCTGGTCGAACGGCCGGCCGCACG
GAATGAATAATTCCTCGTTGGTAGCGTCTTGCATCCATATCATGGTTGTG
TTTTTTTGCCAATCGATCGAAAAGGCCACCCTACCTCACCGTACAAGCAC
GGTACATATTACAGCAGTTCGACGCAAAGTCTGTTCCAACTTTGTGTGAA
GTTACCCCCAGTCGTAGTTGGTATCTGGCATGGTGATAGAAGTGTTCTCG
TTCCGTGACACTGCTGCACTCAAGCAGCTACACGGCTGCTGTAGACTGAG
TCTCAATCGCTCAAGAGTCAACGCTGGTTTACAACGACAACGACCCAACG
GTCAAACTGGTTCAGCAGCGAAAGATATGTGTCGGTTCGGCATACCGTAC
AGTACATACTGTAGTTTCGCCGCAATTCAACCCACTTCGCCCGTATGTTG
AGATGCTGAGATCACTTCCTTTCTCTCTTTCTCTCCCTTGTGTGTACTGC
ACGGCAGTGTGCACTGGGTGAGCAGGGCGAGGAGGGTGTGATACTTGCGT
TTTACCTATCACGCTGTGGTGAAATGTGTGAGCCTAGAAGGAGCGACTCC
TGCGTCAAGTGCGAACTCGCTGCCCCAATTCTGTCGACGTAGCAGCAGTC
CGTAGCAGTCCAGCCTAACTCCAATACTTACCACCTCCTTCATATTGATT
GTGGCGCCCAACTTGGAGCATGTACACCTTGTTTCTATCTGTTGTTCCAC
TTTTTGAACCTCGTTTGTACCTGAGACTCGTTTCTCATTGCCTCTTGGGG
GTAACAAAAAAAACGTTGTCCAGCTAGGTACGGGGGGAGTGGAACGTTTC
ATTTTGGATACGCTCCCCCAGCAACCCTTGTTTCTCATGTATTGGGGGCA
TCGCACGATGATGATGCTTCTTATTGGGAAGTTTCTTATGTTGTGGCCGA
GATTGAGCTGTGTTTCTTAGTCATTTTTTCTTATTTTTCGTAAAAAGTTG
AGCCATTTTTTCTTCACGGAATGTTTCTTAGTTGCGGGCCCGTACTCTAG
TCTCTCTCTGGTCGTGTTCACACACAACCGACTACGATCGCAGTTCGCTC
ACGCCCCTTCACGGGTCGGCCCATTTAGGGCAAAGGAAAGCCGTCGAGAT
GCTCCTCGGCGCTGGCGTTGACGCCAACCTGAAGACGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11925:281..1520+

>mRNA_E-siliculosus-1a_F_contig11925.1229.1 ID=mRNA_E-siliculosus-1a_F_contig11925.1229.1|Name=mRNA_E-siliculosus-1a_F_contig11925.1229.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=324bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11925:281..1520+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATAAAGCTCGAGGGAGATTACTTCCTTATCGGTCTCCTGTCCAGCAGGCG
AAAGCCAGATCCTGGATAAAGCTCGAGGGAGATTACTTCCTTATCGGTCT
CCTGTCCAGCAGGCGAAAGCCAGATCCTGGTTCGCTCACGCCCCTTCACG
GGTCGGCCCATTTAGGGCAAAGGAAAGCCGTCGAGATGCTCCTCGGCGCT
GGCGTTGACGCCAACCTGAAGACGTAGTTCGCTCACGCCCCTTCACGGGT
CGGCCCATTTAGGGCAAAGGAAAGCCGTCGAGATGCTCCTCGGCGCTGGC
GTTGACGCCAACCTGAAGACGTAG
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