mRNA_E-siliculosus-1a_F_contig119.1208.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig119.1208.1
Unique NamemRNA_E-siliculosus-1a_F_contig119.1208.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig119.1208.1 vs. uniprot
Match: A0A6H5LB71_9PHAE (PC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB71_9PHAE)

HSP 1 Score: 407 bits (1047), Expect = 6.490e-143
Identity = 213/232 (91.81%), Postives = 218/232 (93.97%), Query Frame = 1 
Query:    1 MQRFGVSARRRGFPSLLIHSSSSRQLSSFSSGPEHDDYWTAAKTEAQTAPAYQQAAARATVPTPSTPTASGDRWAQPGGPSPGTMPMGEAYKPSSSSNMYGGRSSSSYGRSSNTFNSDSGDFVPPPPPFDMQSSIHLSPVRQADVRSFKGTPLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAMTDIDKEIFALEEKQRSLAAIDEHLLRLAEQPFEVGDEGPDKQAP 696
            MQRFGVSARRRGFPSLLIHSSSSR+LSSFSSGPEHDD+WTAAKTEAQ  PAYQQAAA AT PTP TPTA+GDRWAQPGGPSPGTMPMGEAYKPSSSS MYGGRSSSS GRSSNTFNSDSGDFVPPPP FDMQSS HLSPVRQ DVRSFKG PLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAM DIDKEIFALEE+QRSLAA+D HLL LAEQPFEVGDEGPDKQAP
Sbjct:    1 MQRFGVSARRRGFPSLLIHSSSSRKLSSFSSGPEHDDFWTAAKTEAQATPAYQQAAANATAPTPWTPTATGDRWAQPGGPSPGTMPMGEAYKPSSSSKMYGGRSSSSNGRSSNTFNSDSGDFVPPPPTFDMQSSTHLSPVRQVDVRSFKGRPLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAMADIDKEIFALEEQQRSLAAVDAHLLELAEQPFEVGDEGPDKQAP 232
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BLAST of mRNA_E-siliculosus-1a_F_contig119.1208.1 vs. uniprot
Match: D7FYS7_ECTSI (PC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYS7_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 9.970e-57
Identity = 92/102 (90.20%), Postives = 95/102 (93.14%), Query Frame = 1 
Query:  391 MQSSIHLSPVRQADVRSFKGTPLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAMTDIDKEIFALEEKQRSLAAIDEHLLRLAEQPFEVGDEGPDKQAP 696
            MQSS+HLSPVRQADVR FKG PLVDIRQYFRGAEGQA PTKKGIALTIPQWRRLQEAM DIDKEIFALEE+QRSLAA+D HLL LAEQPFEVGDE PDKQAP
Sbjct:    1 MQSSMHLSPVRQADVRLFKGRPLVDIRQYFRGAEGQAAPTKKGIALTIPQWRRLQEAMADIDKEIFALEEQQRSLAAVDAHLLELAEQPFEVGDEEPDKQAP 102
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BLAST of mRNA_E-siliculosus-1a_F_contig119.1208.1 vs. uniprot
Match: C3ZA15_BRAFL (Activated RNA polymerase II transcriptional coactivator p15 (Fragment) n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZA15_BRAFL)

HSP 1 Score: 66.2 bits (160), Expect = 5.250e-11
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:  403 IHLSPVRQADVRSFKGTPLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAMTDIDKEIFALE 597
            + LS  R   VR FKG  L+DIR+Y+  A G+  P KKGI+LT  QWRRL+EA+ DID++I  L+
Sbjct:    1 LQLSNKRYVSVREFKGKCLIDIREYY-DAGGELKPGKKGISLTTDQWRRLKEAVDDIDEKIADLD 64
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BLAST of mRNA_E-siliculosus-1a_F_contig119.1208.1 vs. uniprot
Match: A0A8H8CPF0_PSICU (PC4 domain-containing protein n=1 Tax=Psilocybe cubensis TaxID=181762 RepID=A0A8H8CPF0_PSICU)

HSP 1 Score: 68.6 bits (166), Expect = 6.040e-11
Identity = 33/67 (49.25%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:  403 IHLSPVRQADVRSFKGTPLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAMTDIDKEIFALEEK 603
            I L   ++A VRSFKG PL+DIR+++ GA+G   P KKGI+LTI QW+ L++ M+ IDK +  +++K
Sbjct:   88 IDLGKKKRATVRSFKGVPLIDIREFY-GADGDEKPGKKGISLTIEQWQSLRDGMSTIDKLLDEVKKK 153
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BLAST of mRNA_E-siliculosus-1a_F_contig119.1208.1 vs. uniprot
Match: UPI0016041207 (activated RNA polymerase II transcriptional coactivator p15-like isoform X2 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016041207)

HSP 1 Score: 67.0 bits (162), Expect = 9.060e-11
Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:  403 IHLSPVRQADVRSFKGTPLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAMTDIDKEIFALE 597
            I LS  R   VR FKG  L+DIR+Y+  A G+  P KKGI+LT  QWRRL+EA+ DID++I  L+
Sbjct:   49 IQLSNKRYVSVREFKGKCLIDIREYY-DAGGELKPGKKGISLTTDQWRRLKEAVDDIDEKIADLD 112
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BLAST of mRNA_E-siliculosus-1a_F_contig119.1208.1 vs. uniprot
Match: A0A8H5HMN0_9AGAR (PC4 domain-containing protein n=1 Tax=Tricholomella constricta TaxID=117010 RepID=A0A8H5HMN0_9AGAR)

HSP 1 Score: 68.2 bits (165), Expect = 1.220e-10
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:  403 IHLSPVRQADVRSFKGTPLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAMTDIDKEIFALEEK 603
            I L   ++A VRSFKGTPL+DIR+++ GA+G   P KKGI+LT+ QW  L+ +M+ +D E+FA  +K
Sbjct:  106 IELGKKKRATVRSFKGTPLIDIREFY-GADGDEKPGKKGISLTMEQWETLKSSMSTLD-ELFATVKK 170
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BLAST of mRNA_E-siliculosus-1a_F_contig119.1208.1 vs. uniprot
Match: A8D8C5_ARTSF (RNA polymerase II transcriptional coactivator n=1 Tax=Artemia franciscana TaxID=6661 RepID=A8D8C5_ARTSF)

HSP 1 Score: 65.5 bits (158), Expect = 3.020e-10
Identity = 29/66 (43.94%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:  388 DMQSSIHLSPVRQADVRSFKGTPLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAMTDIDKEI 585
            D + +  L   R   VRSFKG   VDIR+Y+  A G  +P KKGI+L++ QW+++QEAM ++D+ +
Sbjct:   40 DEEPTWTLDKKRFLKVRSFKGKTFVDIREYYEDASGNLMPGKKGISLSVQQWKKVQEAMDEVDEAL 105
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BLAST of mRNA_E-siliculosus-1a_F_contig119.1208.1 vs. uniprot
Match: A0A409VM65_PSICY (PC4 domain-containing protein n=1 Tax=Psilocybe cyanescens TaxID=93625 RepID=A0A409VM65_PSICY)

HSP 1 Score: 66.6 bits (161), Expect = 3.850e-10
Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:  403 IHLSPVRQADVRSFKGTPLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAMTDIDKEIFALEEK 603
            I L   ++A  RSFKG PL+DIR+++ GA+GQ  P KKGIALT+ QW+ L+   + IDK +  L++K
Sbjct:   98 IDLGKKKRAVARSFKGVPLIDIREFY-GADGQEKPGKKGIALTLEQWQSLKSGASAIDKLLEGLKKK 163
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BLAST of mRNA_E-siliculosus-1a_F_contig119.1208.1 vs. uniprot
Match: A0A061AXT8_CYBFA (CYFA0S09e04236g1_1 n=1 Tax=Cyberlindnera fabianii TaxID=36022 RepID=A0A061AXT8_CYBFA)

HSP 1 Score: 64.7 bits (156), Expect = 1.230e-9
Identity = 29/65 (44.62%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:  403 IHLSPVRQADVRSFKGTPLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAMTDIDKEIFALE 597
            + L   ++  VR FKGT LVD+R+Y+   EGQ  P KKGI+LT+ QWR L + M  ++  + A+E
Sbjct:   45 VELGKSKRCTVRQFKGTTLVDVREYYDAGEGQMKPGKKGISLTLDQWRALLDNMDLVEGAVSAME 109
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BLAST of mRNA_E-siliculosus-1a_F_contig119.1208.1 vs. uniprot
Match: UPI001ED87873 (activated RNA polymerase II transcriptional coactivator p15 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED87873)

HSP 1 Score: 63.5 bits (153), Expect = 1.620e-9
Identity = 29/62 (46.77%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:  400 SIHLSPVRQADVRSFKGTPLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAMTDIDKEI 585
            S HL  ++ A VR+F+G   VDIR+Y++ ++G+  P KKGI+L++ QWRR++E M +ID+ I
Sbjct:   46 SWHLEKMKYAKVRTFQGKVYVDIREYYQ-SDGKMKPGKKGISLSVDQWRRIKELMPEIDEAI 106
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig119.1208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LB71_9PHAE6.490e-14391.81PC4 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FYS7_ECTSI9.970e-5790.20PC4 domain-containing protein n=1 Tax=Ectocarpus s... [more]
C3ZA15_BRAFL5.250e-1152.31Activated RNA polymerase II transcriptional coacti... [more]
A0A8H8CPF0_PSICU6.040e-1149.25PC4 domain-containing protein n=1 Tax=Psilocybe cu... [more]
UPI00160412079.060e-1153.85activated RNA polymerase II transcriptional coacti... [more]
A0A8H5HMN0_9AGAR1.220e-1050.75PC4 domain-containing protein n=1 Tax=Tricholomell... [more]
A8D8C5_ARTSF3.020e-1043.94RNA polymerase II transcriptional coactivator n=1 ... [more]
A0A409VM65_PSICY3.850e-1049.25PC4 domain-containing protein n=1 Tax=Psilocybe cy... [more]
A0A061AXT8_CYBFA1.230e-944.62CYFA0S09e04236g1_1 n=1 Tax=Cyberlindnera fabianii ... [more]
UPI001ED878731.620e-946.77activated RNA polymerase II transcriptional coacti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig119contigE-siliculosus-1a_F_contig119:8117..8815 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size699
Model size699
Exons1
Ec32 orthologEc-19_002360.1
Ec32 ortholog descriptionssDNA-binding transcriptional regulator
Hectar predicted targeting categorymitochondrion
Best eggNOG OGNA|NA|NA
Best tax levelChordata
COG Functional cat.K
EggNOG OGs3A20Q@33154,3BQG5@33208,3DBFI@33213,48ET1@7711,KOG2712@1,KOG2712@2759
EggNOG free text desc.positive regulation of transcription initiation from RNA polymerase II promoter
GOsGO:0000981,GO:0001205,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003700,GO:0003705,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0005730,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0023052,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0060260,GO:0060261,GO:0060395,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2000142,GO:2000144,GO:2001141
Preferred nameSUB1
Seed eggNOG ortholog7739.XP_002594592.1
Seed ortholog evalue6.5e-08
Seed ortholog score64.7
Taxonomic scopeMetazoa
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927706.110456-CDS-E-siliculosus-1a_F_contig119:8116..88151622927706.110456-CDS-E-siliculosus-1a_F_contig119:8116..8815Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig119 8117..8815 -
1696318646.9402626-CDS-E-siliculosus-1a_F_contig119:8116..88151696318646.9402626-CDS-E-siliculosus-1a_F_contig119:8116..8815Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig119 8117..8815 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig119.1208.1prot_E-siliculosus-1a_F_contig119.1208.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig119 8117..8815 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig119.1208.1

>prot_E-siliculosus-1a_F_contig119.1208.1 ID=prot_E-siliculosus-1a_F_contig119.1208.1|Name=mRNA_E-siliculosus-1a_F_contig119.1208.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=233bp
MQRFGVSARRRGFPSLLIHSSSSRQLSSFSSGPEHDDYWTAAKTEAQTAP
AYQQAAARATVPTPSTPTASGDRWAQPGGPSPGTMPMGEAYKPSSSSNMY
GGRSSSSYGRSSNTFNSDSGDFVPPPPPFDMQSSIHLSPVRQADVRSFKG
TPLVDIRQYFRGAEGQAVPTKKGIALTIPQWRRLQEAMTDIDKEIFALEE
KQRSLAAIDEHLLRLAEQPFEVGDEGPDKQAP*
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mRNA from alignment at E-siliculosus-1a_F_contig119:8117..8815-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig119.1208.1 ID=mRNA_E-siliculosus-1a_F_contig119.1208.1|Name=mRNA_E-siliculosus-1a_F_contig119.1208.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=699bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig119:8117..8815- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAGAGGTTCGGAGTGTCCGCGAGAAGGCGTGGGTTTCCGTCTCTCCT
TATTCACAGCAGTTCATCGAGACAATTGTCTAGCTTCTCGTCCGGCCCAG
AGCATGATGACTATTGGACCGCTGCGAAAACTGAGGCACAAACAGCACCA
GCCTACCAACAGGCTGCAGCTCGCGCCACCGTTCCCACTCCTTCGACACC
GACTGCTAGTGGAGACCGGTGGGCGCAGCCTGGAGGGCCGAGCCCAGGAA
CGATGCCAATGGGTGAAGCATACAAGCCCTCAAGCAGCAGTAACATGTAT
GGAGGCCGTAGCAGCAGCTCTTACGGCCGTTCGAGCAATACATTCAACTC
GGACTCGGGCGATTTCGTGCCCCCCCCGCCCCCTTTCGACATGCAGAGCT
CGATTCACCTGTCTCCCGTGAGGCAGGCTGATGTGCGCTCGTTTAAGGGC
ACACCTCTGGTGGACATCCGGCAATATTTCAGGGGCGCCGAAGGACAGGC
TGTCCCTACGAAGAAGGGCATTGCACTCACAATACCTCAGTGGAGACGCC
TGCAAGAAGCCATGACCGACATCGACAAGGAGATCTTCGCGCTTGAGGAA
AAGCAACGCTCGTTGGCCGCTATCGACGAGCATCTCCTAAGGCTTGCGGA
ACAGCCTTTTGAGGTTGGAGATGAGGGGCCTGACAAACAGGCACCATAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig119:8117..8815-

>mRNA_E-siliculosus-1a_F_contig119.1208.1 ID=mRNA_E-siliculosus-1a_F_contig119.1208.1|Name=mRNA_E-siliculosus-1a_F_contig119.1208.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1398bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig119:8117..8815- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAGAGGTTCGGAGTGTCCGCGAGAAGGCGTGGGTTTCCGTCTCTCCT
TATTCACAGCAGTTCATCGAGACAATTGTCTAGCTTCTCGTCCGGCCCAG
AGCATGATGACTATTGGACCGCTGCGAAAACTGAGGCACAAACAGCACCA
GCCTACCAACAGGCTGCAGCTCGCGCCACCGTTCCCACTCCTTCGACACC
GACTGCTAGTGGAGACCGGTGGGCGCAGCCTGGAGGGCCGAGCCCAGGAA
CGATGCCAATGGGTGAAGCATACAAGCCCTCAAGCAGCAGTAACATGTAT
GGAGGCCGTAGCAGCAGCTCTTACGGCCGTTCGAGCAATACATTCAACTC
GGACTCGGGCGATTTCGTGCCCCCCCCGCCCCCTTTCGACATGCAGAGCT
CGATTCACCTGTCTCCCGTGAGGCAGGCTGATGTGCGCTCGTTTAAGGGC
ACACCTCTGGTGGACATCCGGCAATATTTCAGGGGCGCCGAAGGACAGGC
TGTCCCTACGAAGAAGGGCATTGCACTCACAATACCTCAGTGGAGACGCC
TGCAAGAAGCCATGACCGACATCGACAAGGAGATCTTCGCGCTTGAGGAA
AAGCAACGCTCGTTGGCCGCTATCGACGAGCATCTCCTAAGGCTTGCGGA
ACAGCCTTTTGAGGTTGGAGATGAGGGGCCTGACAAACAGGCACCATAGA
TGCAGAGGTTCGGAGTGTCCGCGAGAAGGCGTGGGTTTCCGTCTCTCCTT
ATTCACAGCAGTTCATCGAGACAATTGTCTAGCTTCTCGTCCGGCCCAGA
GCATGATGACTATTGGACCGCTGCGAAAACTGAGGCACAAACAGCACCAG
CCTACCAACAGGCTGCAGCTCGCGCCACCGTTCCCACTCCTTCGACACCG
ACTGCTAGTGGAGACCGGTGGGCGCAGCCTGGAGGGCCGAGCCCAGGAAC
GATGCCAATGGGTGAAGCATACAAGCCCTCAAGCAGCAGTAACATGTATG
GAGGCCGTAGCAGCAGCTCTTACGGCCGTTCGAGCAATACATTCAACTCG
GACTCGGGCGATTTCGTGCCCCCCCCGCCCCCTTTCGACATGCAGAGCTC
GATTCACCTGTCTCCCGTGAGGCAGGCTGATGTGCGCTCGTTTAAGGGCA
CACCTCTGGTGGACATCCGGCAATATTTCAGGGGCGCCGAAGGACAGGCT
GTCCCTACGAAGAAGGGCATTGCACTCACAATACCTCAGTGGAGACGCCT
GCAAGAAGCCATGACCGACATCGACAAGGAGATCTTCGCGCTTGAGGAAA
AGCAACGCTCGTTGGCCGCTATCGACGAGCATCTCCTAAGGCTTGCGGAA
CAGCCTTTTGAGGTTGGAGATGAGGGGCCTGACAAACAGGCACCATAG
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