mRNA_E-siliculosus-1a_F_contig1186.1193.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1186.1193.1 vs. uniprot
Match: D8LME0_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME0_ECTSI) HSP 1 Score: 946 bits (2445), Expect = 0.000e+0 Identity = 486/490 (99.18%), Postives = 488/490 (99.59%), Query Frame = 1
Query: 184 MSRKNNSRVTVSATAVLGVLVGLLTAEGASAQQVGNLTALSRGYSVNLTGSSLNNPFDDTSFNPASAIGVSADGTGVYVGGELGGLIHLARSPEDGSLTMTRAWAASDFDEALQSVEQIVVTPDGSKLITLGSRGLGRGTFGVFSISADGDLQLLQEDDHRGIIRAGFPDSSSRDLYAIDDDRSVLTHYTYDGSRFVVSQTVGGFTCLYGLGVAPDGANVYVADDCLYTVTNFRRDPDTGSLTFQDELSGDPRNGDGLGCLKSLSFTEDGAWVVGLDSCDDVISILKRDLDTGTLTPTTLINTDNPDGNTINIDKTWSALVVSDGLGDIYVADWSDSKILWVRADFGVGGDGSVISTNWFSLSFKPSTLIASPDLQTVYVANKENDVWEGGAYPRVAVPTPDSDGSGTSAVNVTLAVALSVSLVAAIVIAGVAAKFIQRKRNISMYAGEEETLRAALEANPNDAVAHNNLGYLMETVYKDFAEAEAHYSE 1653
M+RK+NSRVTVSATAVLGVLVGLLTAEGA AQQVGNLT LSRGYSVNLTGSSLNNPFDDTSFNPASAIGVSADGTGVYVGGELGGLIHLARSPEDGSLTMTRAWAASDFDEALQSVEQIVVTPDGSKLITLGSRGLGRGTFGVFSISADGDLQLLQEDDHRGIIRAGFPDSSSRDLYAIDDDRSVLTHYTYDGSRFVVSQTVGGFTCLYGLGVAPDGANVYVADDCLYTVTNFRRDPDTGSLTFQDELSGDPRNGDGLGCLKSLSFTEDGAWVVGLDSCDDVISILKRDLDTGTLTPTTLINTDNPDGNTINIDKTWSALVVSDGLGDIYVADWSDSKILWVRADFGVGGDGSVISTNWFSLSFKPSTLIASPDLQTVYVANKENDVWEGGAYPRVAVPTPDSDGSGTSAVNVTLAVALSVSLVAAIVIAGVAAKFIQRKRNISMYAGEEETLRAALEANPNDAVAHNNLGYLMETVYKDFAEAEAHYSE
Sbjct: 1 MTRKSNSRVTVSATAVLGVLVGLLTAEGALAQQVGNLTGLSRGYSVNLTGSSLNNPFDDTSFNPASAIGVSADGTGVYVGGELGGLIHLARSPEDGSLTMTRAWAASDFDEALQSVEQIVVTPDGSKLITLGSRGLGRGTFGVFSISADGDLQLLQEDDHRGIIRAGFPDSSSRDLYAIDDDRSVLTHYTYDGSRFVVSQTVGGFTCLYGLGVAPDGANVYVADDCLYTVTNFRRDPDTGSLTFQDELSGDPRNGDGLGCLKSLSFTEDGAWVVGLDSCDDVISILKRDLDTGTLTPTTLINTDNPDGNTINIDKTWSALVVSDGLGDIYVADWSDSKILWVRADFGVGGDGSVISTNWFSLSFKPSTLIASPDLQTVYVANKENDVWEGGAYPRVAVPTPDSDGSGTSAVNVTLAVALSVSLVAAIVIAGVAAKFIQRKRNISMYAGEEETLRAALEANPNDAVAHNNLGYLMETVYKDFAEAEAHYSE 490
BLAST of mRNA_E-siliculosus-1a_F_contig1186.1193.1 vs. uniprot
Match: A0A835ZFA9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFA9_9STRA) HSP 1 Score: 172 bits (436), Expect = 4.200e-42 Identity = 147/490 (30.00%), Postives = 221/490 (45.10%), Query Frame = 1
Query: 268 ASAQQVGNLTALSRGYSVNLTG-SSLNNPFDDTSFNPASAIGVSADGTGVYVGGELGGLIHLARSPEDGSLTMTRAWAASDFDEALQSVEQIVVTPDGSKLITLGSRGLGRGTFGVFSISADGDLQLLQEDDHRGIIRAGFPDSSSRDLYAIDDDRSVLTHYTYDGSR--FVVSQTVGGFTCLYG-----LGVAPDGANVYVADDCLYTVTNFRRDPDTGSL--TFQDELSGDPR--NGDGLGCLKSLSFTEDGAWVVGLDSCDDVISILKRDLDTGTLTPTTLINTDNPDGNTINIDKTWSALVVSDGLGDIYVADWSDSKILWVRADFGVGGDGSVISTNWFSLSFKPSTLIASPDLQTVYVANKENDV----------WEGG------AYPRVAVPTPDSDGSGT--SAVNVTLAVALSVSLVAAIVIAGVAAKFIQRKRNISMYAGEEETLRAALEANPNDAVAHNNLGYLMETVYKDFAEAEAHY 1647
A A VG L+ S + + T S +NPF + + ASAI VS DG VYVGG+ GGL L R G L + W AS F AL++V+ + ++ D ++ G++ G+ G+FS+ DG LL +++ I A F S+ D Y ID L ++Y + F V Q + L G L ++PDG NVYV D NF RDP TG + + L GDP DG+G S++F+ + L++ +++L R + G L + DG + L+ SD D+YV S +I W++ D ++ + WF +P LIA + VY + W+G A P PT S T S + TL + S ++IA +++ + EEE AL+A+PNDA+AHNN G+ ++ ++A AE HY
Sbjct: 20 AQAAAVGELSEASTPVAFDFTSLSEASNPFFSKT-SAASAIAVSRDGRNVYVGGDKGGLAWLTRDVATGDLRYQQGWPASAFTTALKAVQHVSISEDDGYMVICGNKADPYGSLGIFSLDVDGTPSLLYQEEIPDIQHALFAPGSATDFYTIDQTNMELRLWSYSSADHGFSVQQAIA----LEGPSPDALAISPDGLNVYVHDSSSAKNFNFARDPATGLVGESPASTLQGDPNAVGSDGIGHWSSMAFSSSAPFAFALETLVGQVTVLSRAVGNGALAVLSKFPVAYDDGAAVACRADAPLLLASDDDVDLYVLGESRGQIGWLQFD---AATHALHANGWFVTGSRPRQLIADAAYEHVYATFAATNTXXXXXXXXXKWKGAHFNREPAVPPTPAPTTPQPTSATTYSVESQTLLLGESADTFNLMLIAV--------HKSVELAQAEEEKFILALQASPNDALAHNNYGHFLQHKRSNYAGAERHY 493
BLAST of mRNA_E-siliculosus-1a_F_contig1186.1193.1 vs. uniprot
Match: A0A3B9HEV5_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A3B9HEV5_9CHLR) HSP 1 Score: 73.6 bits (179), Expect = 9.200e-10 Identity = 66/229 (28.82%), Postives = 99/229 (43.23%), Query Frame = 1
Query: 472 SLTMTRAWAASDFD-----EALQSVEQIVVTPDGSKLITLGSRGLGRGTFGVFSISA-DGDLQLLQE--------------------DDHRGIIRAGFPDSSSRDLYAIDDDRSVLTHYTYDGSRFVVSQTVGGFTCLYG---LGVAPDGANVYVADDCLYTVTNFRRDPDTGSLTFQDELSGDPRNGDGLGCLKSLSFTEDGAWVVGLDSCDDVISILKRDLDTGTLT 1071
S T T A+ D E L V I ++P GS L T G GVFSI+ G L ++ D + + AG+ +S ++IDD +L + Y +S G T L+ L V PDG ++Y+ ++T F+R+P TGSL+ L + DGL SL T DG +V + DD+I++ +R+ TG+ T
Sbjct: 225 SATGTLAYIEHHIDNTAGVEGLDGVRDIRISPSGSHLYTAGFED---NAIGVFSINGTSGQLSFIRSYVNGLNGVHGIQGATAIAISPDGKHLYCAGWKGNSVA-AFSIDDTTGLLNYLGY------ISNEQHGITSLWSPSDLEVTPDGKHLYITAATSDSLTAFKREPSTGSLSLIGFLKDNTNGIDGLDWASSLEITSDGKHIVVTAAIDDMITVFRRNPSTGSFT 443
BLAST of mRNA_E-siliculosus-1a_F_contig1186.1193.1 vs. uniprot
Match: A0A5N9ATB2_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=SAR202 cluster bacterium TaxID=2030829 RepID=A0A5N9ATB2_9CHLR) HSP 1 Score: 73.6 bits (179), Expect = 1.000e-9 Identity = 66/229 (28.82%), Postives = 99/229 (43.23%), Query Frame = 1
Query: 472 SLTMTRAWAASDFD-----EALQSVEQIVVTPDGSKLITLGSRGLGRGTFGVFSISA-DGDLQLLQE--------------------DDHRGIIRAGFPDSSSRDLYAIDDDRSVLTHYTYDGSRFVVSQTVGGFTCLYG---LGVAPDGANVYVADDCLYTVTNFRRDPDTGSLTFQDELSGDPRNGDGLGCLKSLSFTEDGAWVVGLDSCDDVISILKRDLDTGTLT 1071
S T T A+ D E L V I ++P GS L T G GVFSI+ G L ++ D + + AG+ +S ++IDD +L + Y +S G T L+ L V PDG ++Y+ ++T F+R+P TGSL+ L + DGL SL T DG +V + DD+I++ +R+ TG+ T
Sbjct: 529 SATGTLAYIEHHIDNTAGVEGLDGVRDIRISPSGSHLYTAGFED---NAIGVFSINGTSGQLSFIRSYVNGLNGVHGIQGATAIAISPDGKHLYCAGWKGNSVA-AFSIDDTTGLLNYLGY------ISNEQHGITSLWSPSDLEVTPDGKHLYITAATSDSLTAFKREPSTGSLSLIGFLKDNTNGIDGLDWASSLEITSDGKHIVVTAAIDDMITVFRRNPSTGSFT 747
BLAST of mRNA_E-siliculosus-1a_F_contig1186.1193.1 vs. uniprot
Match: A0A382UKF5_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382UKF5_9ZZZZ) HSP 1 Score: 68.9 bits (167), Expect = 4.960e-9 Identity = 61/210 (29.05%), Postives = 90/210 (42.86%), Query Frame = 1
Query: 514 EALQSVEQIVVTPDGSKLITLGSRGLGRGTFGVFSISA---------------------DGDLQLLQEDDHRGIIRAGFPDSSSRDLYAIDDDRSVLTHYTYDGSRFVVSQTVGGFTCLYG---LGVAPDGANVYVADDCLYTVTNFRRDPDTGSLTFQDELSGDPRNGDGLGCLKSLSFTEDGAWVVGLDSCDDVISILKRDLDTGTLT 1071
E L V I ++P GS L T GVFS++A G + D + + AG+ +S ++IDD +LT+ Y VS G T L+ L V PDG ++YV ++T FRRD TGSL+ L + DGL SL DG +V + D+ +++ KR+ TG++T
Sbjct: 30 EGLDDVRDIRLSPSGSHLYTAAFE---ENAIGVFSVNATSGQLSFIGSHINGLDGVHGIQGATAIAISPDGQHLYCAGWKGNSIA-AFSIDDATGLLTYLGY------VSNEQYGVTSLWSPSDLEVTPDGKHLYVTAATSDSLTVFRRDSSTGSLSLIGFLKDNTNGIDGLDWASSLEIMSDGQHIVVTAAVDNTVTVFKRNSSTGSIT 229
BLAST of mRNA_E-siliculosus-1a_F_contig1186.1193.1 vs. uniprot
Match: A7BT48_9GAMM (Uncharacterized protein n=1 Tax=Beggiatoa sp. PS TaxID=422289 RepID=A7BT48_9GAMM) HSP 1 Score: 61.2 bits (147), Expect = 6.450e-6 Identity = 51/162 (31.48%), Postives = 78/162 (48.15%), Query Frame = 1
Query: 733 SVLTHYTYDGSRFVVSQTVGGFTCLYGLG------VAPDGANVYVADDCLYTVTNFRRDPDTGSLTFQDELSGDPRNGDGLGCLKSLSFTEDGAWVVGLDSCDDVISILKRDLDTGTLTPTTLINTDNPDGNTINIDKTWSALVVSDGLGDIYVADWSDSKI 1200
+V + T +G+ ++ V G + GL V+ DG +VY T+ F R DTG LT + D + DGLG + ++ + DG +V S D+ I+I +RD +TG LT L+ D DG I+ A+ VS IYVA + D+ +
Sbjct: 21 TVFSRDTTNGNLSLIQTLVDGTPGVTGLNRANSVVVSQDGKHVYTTASSNNTLVLFNRATDTGLLTLIEVYQDDVKGIDGLGGITDVAVSPDGRYVYASGSGDNAIAIFRRDANTGKLTFIDLLR-DGIDG--IDGLTQARAVTVSPQGDHIYVAGFGDNAV 179 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1186.1193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1186.1193.1 >prot_E-siliculosus-1a_F_contig1186.1193.1 ID=prot_E-siliculosus-1a_F_contig1186.1193.1|Name=mRNA_E-siliculosus-1a_F_contig1186.1193.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=687bp MHRRRRHCCLRRGKRKTHHQNMGAAAHGGSSSRISFAEGKGFIGPREEDLback to top mRNA from alignment at E-siliculosus-1a_F_contig1186:24312..35542- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1186.1193.1 ID=mRNA_E-siliculosus-1a_F_contig1186.1193.1|Name=mRNA_E-siliculosus-1a_F_contig1186.1193.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=11231bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1186:24312..35542- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1186:24312..35542- >mRNA_E-siliculosus-1a_F_contig1186.1193.1 ID=mRNA_E-siliculosus-1a_F_contig1186.1193.1|Name=mRNA_E-siliculosus-1a_F_contig1186.1193.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=4122bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1186:24312..35542- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |