mRNA_E-siliculosus-1a_F_contig11848.1184.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11848.1184.1
Unique NamemRNA_E-siliculosus-1a_F_contig11848.1184.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11848.1184.1 vs. uniprot
Match: D7FH45_ECTSI (ERCC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH45_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 2.190e-43
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:   34 EDLVFEPLPSLHAVVFSYAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 267
            EDLVFEPLPSLHAVVFSYAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR
Sbjct:  754 EDLVFEPLPSLHAVVFSYAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 831
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BLAST of mRNA_E-siliculosus-1a_F_contig11848.1184.1 vs. uniprot
Match: A0A6H5JEA6_9PHAE (ERCC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA6_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 9.100e-42
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 1 
Query:   34 EDLVFEPLPSLHAVVFSYAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 267
            EDLVFEPLPSLHAVVFS+AQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGR LDRPPLVVYFMLYEQSVEEQR
Sbjct:  845 EDLVFEPLPSLHAVVFSFAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRTLDRPPLVVYFMLYEQSVEEQR 922
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BLAST of mRNA_E-siliculosus-1a_F_contig11848.1184.1 vs. uniprot
Match: A0A4D9D5Y9_9STRA (ERCC4 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5Y9_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 8.190e-14
Identity = 34/67 (50.75%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:   67 HAVVFSYAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 267
            H ++ +Y+QA  ++ +++++ PD +VLYDPDA FVR +E +QA RP     L VYFM+YE+SVEEQR
Sbjct:  778 HVIMITYSQAYTNMKLIEEVYPDAIVLYDPDAQFVREVEVHQARRP-PTETLRVYFMVYEESVEEQR 843
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BLAST of mRNA_E-siliculosus-1a_F_contig11848.1184.1 vs. uniprot
Match: W7TM79_9STRA (Dna repair endonuclease xpf n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TM79_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 9.380e-14
Identity = 33/67 (49.25%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:   67 HAVVFSYAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 267
            H ++ +Y+QA  ++ +++++ PD ++LYDPDA FVR +E +QA RP     L VYFM+YE+SVEEQR
Sbjct:  105 HVIMITYSQAYTNMKLIEEVYPDAIILYDPDAQFVREVEVHQARRP-PTETLRVYFMVYEESVEEQR 170
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BLAST of mRNA_E-siliculosus-1a_F_contig11848.1184.1 vs. uniprot
Match: A0A067CU23_SAPPC (ERCC4 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CU23_SAPPC)

HSP 1 Score: 74.3 bits (181), Expect = 1.510e-13
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:   67 HAVVFSYAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 264
            H V+ +YAQA+    +L DL+P+ VVLYDPD AF+R LE Y A    D  PL VYFM+Y++S E+Q
Sbjct:  499 HLVICTYAQAKRCATLLHDLQPEHVVLYDPDVAFIRELEVYHAHYADD--PLSVYFMVYDESAEQQ 562
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BLAST of mRNA_E-siliculosus-1a_F_contig11848.1184.1 vs. uniprot
Match: A0A7S0KJP7_9CHLO (Hypothetical protein n=2 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KJP7_9CHLO)

HSP 1 Score: 71.2 bits (173), Expect = 1.840e-12
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:   76 VFSYAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 267
            +F YA  R  +N+L  ++P FVV+YDPDAAF+R LE Y+A  P    PL VYFM+Y+ S+EEQ+
Sbjct:  651 IFVYAHERR-VNVLNHIQPSFVVMYDPDAAFIRELEVYKAQHP--DAPLKVYFMVYDTSLEEQK 711
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BLAST of mRNA_E-siliculosus-1a_F_contig11848.1184.1 vs. uniprot
Match: A0A1W0A3H2_9STRA (DNA repair endonuclease XPF n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A3H2_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.650e-12
Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:   73 VVFSYAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 264
            V+ +YAQ ++  ++L+DL+P+ V+LYDPD AF+R LE Y A    D  PL VYFM+YE+S E+Q
Sbjct:  498 VICTYAQGKKCGSLLEDLQPEHVILYDPDVAFIRELEIYHARYYED--PLNVYFMVYEESAEQQ 559
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BLAST of mRNA_E-siliculosus-1a_F_contig11848.1184.1 vs. uniprot
Match: A4S158_OSTLU (ERCC4 domain-containing protein n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4S158_OSTLU)

HSP 1 Score: 69.7 bits (169), Expect = 6.400e-12
Identity = 33/64 (51.56%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:   76 VFSYAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 267
            ++ YA  R+ LN+L  ++P FVV+YDPDA+F+R LE YQA RP    P+ VYF++Y+ S+EEQ+
Sbjct:  610 MYVYAHERK-LNLLNRIQPSFVVMYDPDASFIRELEVYQATRP--DVPVKVYFLVYDTSLEEQK 670
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BLAST of mRNA_E-siliculosus-1a_F_contig11848.1184.1 vs. uniprot
Match: Q013S3_OSTTA (Restriction endonuclease type II-like n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q013S3_OSTTA)

HSP 1 Score: 68.9 bits (167), Expect = 1.190e-11
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:   76 VFSYAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR 267
            +F YA  R+ LN+L  + P FVV+YDPDAAF+R LE YQA  P     + VYFM+Y+ S+EEQ+
Sbjct:  622 IFVYAHERK-LNLLNRIRPSFVVMYDPDAAFIRELEVYQAQHP--EVTVKVYFMVYDTSLEEQK 682
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BLAST of mRNA_E-siliculosus-1a_F_contig11848.1184.1 vs. uniprot
Match: A0A168J231_MUCCL (ERCC4 domain-containing protein n=4 Tax=Mucor TaxID=4830 RepID=A0A168J231_MUCCL)

HSP 1 Score: 67.4 bits (163), Expect = 4.140e-11
Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:   46 FEPLPSLHAVVFSYAQARESLNILQDLEPDFVVLYDPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQ 264
            FE +PS   +     +   +  +LQD +P F++LYDP+ AFVR +E Y+A  P     + VYFMLYE SVEEQ
Sbjct:  553 FEEIPSTSLITIQCYEDDANEQVLQDAQPRFIILYDPNPAFVRQIEVYRAQHPT--VDIRVYFMLYENSVEEQ 623
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11848.1184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH45_ECTSI2.190e-43100.00ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JEA6_9PHAE9.100e-4297.44ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A4D9D5Y9_9STRA8.190e-1450.75ERCC4 domain-containing protein n=1 Tax=Nannochlor... [more]
W7TM79_9STRA9.380e-1449.25Dna repair endonuclease xpf n=1 Tax=Nannochloropsi... [more]
A0A067CU23_SAPPC1.510e-1353.03ERCC4 domain-containing protein n=2 Tax=Saprolegni... [more]
A0A7S0KJP7_9CHLO1.840e-1253.13Hypothetical protein n=2 Tax=Ostreococcus mediterr... [more]
A0A1W0A3H2_9STRA4.650e-1251.56DNA repair endonuclease XPF n=1 Tax=Thraustotheca ... [more]
A4S158_OSTLU6.400e-1251.56ERCC4 domain-containing protein n=2 Tax=Ostreococc... [more]
Q013S3_OSTTA1.190e-1153.13Restriction endonuclease type II-like n=2 Tax=Ostr... [more]
A0A168J231_MUCCL4.140e-1145.21ERCC4 domain-containing protein n=4 Tax=Mucor TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11848contigE-siliculosus-1a_F_contig11848:314..1432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size270
Model size270
Exons2
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.L
EggNOG OGsCOG1948@1,KOG0442@2759
EggNOG free text desc.resolution of meiotic recombination intermediates
GOsGO:0000003,GO:0000014,GO:0000109,GO:0000110,GO:0000280,GO:0000710,GO:0000712,GO:0000724,GO:0000725,GO:0000726,GO:0000735,GO:0000736,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003697,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006277,GO:0006281,GO:0006289,GO:0006296,GO:0006298,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0016043,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0022402,GO:0022413,GO:0022414,GO:0030154,GO:0032502,GO:0032505,GO:0032991,GO:0033554,GO:0033683,GO:0034641,GO:0034645,GO:0034654,GO:0035822,GO:0035825,GO:0036297,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045002,GO:0045132,GO:0045165,GO:0046483,GO:0048285,GO:0048869,GO:0050896,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0061982,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0097159,GO:0098813,GO:0140013,GO:0140097,GO:1901255,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1903046,GO:1990391,GO:1990599
KEGG Pathwayko03420,ko03460,map03420,map03460
KEGG koko:K10848
Preferred nameRAD1
Seed eggNOG ortholog2880.D7FH45
Seed ortholog evalue5.8e-37
Seed ortholog score159.8
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927702.5161843-CDS-E-siliculosus-1a_F_contig11848:313..4061622927702.5161843-CDS-E-siliculosus-1a_F_contig11848:313..406Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11848 314..406 +
1696318645.1301715-CDS-E-siliculosus-1a_F_contig11848:313..4061696318645.1301715-CDS-E-siliculosus-1a_F_contig11848:313..406Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11848 314..406 +
1622927702.5334876-CDS-E-siliculosus-1a_F_contig11848:1255..14321622927702.5334876-CDS-E-siliculosus-1a_F_contig11848:1255..1432Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11848 1256..1432 +
1696318645.1521394-CDS-E-siliculosus-1a_F_contig11848:1255..14321696318645.1521394-CDS-E-siliculosus-1a_F_contig11848:1255..1432Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11848 1256..1432 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11848.1184.1prot_E-siliculosus-1a_F_contig11848.1184.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11848 314..1432 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11848.1184.1

>prot_E-siliculosus-1a_F_contig11848.1184.1 ID=prot_E-siliculosus-1a_F_contig11848.1184.1|Name=mRNA_E-siliculosus-1a_F_contig11848.1184.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=90bp
GGGGGGGGGGGEDLVFEPLPSLHAVVFSYAQARESLNILQDLEPDFVVLY
DPDAAFVRTLEAYQAGRPLDRPPLVVYFMLYEQSVEEQR*
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mRNA from alignment at E-siliculosus-1a_F_contig11848:314..1432+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11848.1184.1 ID=mRNA_E-siliculosus-1a_F_contig11848.1184.1|Name=mRNA_E-siliculosus-1a_F_contig11848.1184.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1119bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11848:314..1432+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGACCTGGTGTTCGA
GCCGTTACCCTCTCTCCACGCGGTGGTTTTCTCCTACGCTCAGGTGAGAA
GAGAAGACAAGACAAGACAAGACAAGTCCGGGTGTGCTTATGTTTTAATC
ATGGAGGAGGGGGTGCCGTGGTTTGAGAAATGCGGTGGTATGCGTGAGTG
CCACGGTGTGCAGGGGTGCCATGGTATGCGGAGTTGTCATGGTATGAGGG
GTTGCCGCGGGAAGCGGGGGTGCCGTGGCATGCGTGGGTGCCGTAGTGTG
TGGGGGTGCCCTGGTATGCGGGAGTGCCGCGGGGAGCAGAGAGGTTCGTG
ATCTCCGTTGGACAAGGGCGACCAGGTGGTCAGTCTACGACGTGCGTCTG
CACTGGGCAGCAAAGGACTCATCACGATAACGACGCTGACGATACGGGCG
GAGGGGTAGCACACAGGGAACATTTAGTAGAAAACTTCAATTGGAGGACG
CAACTGCGGCGCAGGAGAGCAGGATGGGGATGGCGGGACCTACCGCCAGG
GTGTTGAATGTGGTTGAGGTGGCAGGAATCTCAATCTTGTCACAAACTTG
CTTGTCGGTTCATTGGTATTCCCCCTCCCTTCACACGCATTCGATGGCCA
TCACAAGTAGATAAGAGCGTGGAGGCAGGAGGAGAGCATTTTGGCGACAA
GCCCGCAGAGCGTGTGGACAGTAGGGTCTGGCGAACCACCGTTTCAATGA
TCCCTGTTGTCGTTAACGCTGTGGTCATGTATTATGTCTTTCTACTCTGT
CTTTTCTGTCCAAATTTTCTTTTCGAACCTTTTGGCGATGTACGATGTTT
GCCGTTTCTCTGTGTCTGCTGTGTATCATGTCCTTTTTTTTTTTGTCTTT
GCATTTTTGATTTTCCCCTCTTTTTTTTTTCTTTTCGACCAGGCTCGGGA
AAGCCTCAACATTCTCCAGGACCTAGAGCCGGACTTTGTGGTTTTGTACG
ACCCCGACGCGGCGTTCGTTCGAACCCTAGAGGCCTACCAGGCAGGGAGG
CCGCTCGACCGTCCCCCCCTCGTGGTGTACTTCATGCTGTACGAGCAGAG
CGTGGAGGAGCAAAGGTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11848:314..1432+

>mRNA_E-siliculosus-1a_F_contig11848.1184.1 ID=mRNA_E-siliculosus-1a_F_contig11848.1184.1|Name=mRNA_E-siliculosus-1a_F_contig11848.1184.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=540bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11848:314..1432+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGACCTGGTGTTCGA
GCCGTTACCCTCTCTCCACGCGGTGGTTTTCTCCTACGCTCAGGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGAGGACCTGGTGTTCGAGCCGTTA
CCCTCTCTCCACGCGGTGGTTTTCTCCTACGCTCAGGCTCGGGAAAGCCT
CAACATTCTCCAGGACCTAGAGCCGGACTTTGTGGTTTTGTACGACCCCG
ACGCGGCGTTCGTTCGAACCCTAGAGGCCTACCAGGCAGGGAGGCCGCTC
GACCGTCCCCCCCTCGTGGTGTACTTCATGCTGTACGAGCAGAGCGTGGA
GGAGCAAAGGTAAGCTCGGGAAAGCCTCAACATTCTCCAGGACCTAGAGC
CGGACTTTGTGGTTTTGTACGACCCCGACGCGGCGTTCGTTCGAACCCTA
GAGGCCTACCAGGCAGGGAGGCCGCTCGACCGTCCCCCCCTCGTGGTGTA
CTTCATGCTGTACGAGCAGAGCGTGGAGGAGCAAAGGTAA
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