mRNA_E-siliculosus-1a_F_contig11808.1169.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11808.1169.1 vs. uniprot
Match: D7FTY3_ECTSI (S5 DRBM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY3_ECTSI) HSP 1 Score: 343 bits (880), Expect = 1.770e-116 Identity = 173/175 (98.86%), Postives = 173/175 (98.86%), Query Frame = 1
Query: 1 QTDGPAPPKKKK--TVEMAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKR 519
QTDGPAPPKKKK TVEMAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKR
Sbjct: 183 QTDGPAPPKKKKKKTVEMAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKR 357
BLAST of mRNA_E-siliculosus-1a_F_contig11808.1169.1 vs. uniprot
Match: D7FTY0_ECTSI (S5 DRBM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTY0_ECTSI) HSP 1 Score: 326 bits (836), Expect = 8.930e-111 Identity = 166/173 (95.95%), Postives = 166/173 (95.95%), Query Frame = 1
Query: 1 QTDGPAPPKKKKTVEMAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKR 519
QTDGPAPPKKKKTVEMAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSR AGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKR
Sbjct: 124 QTDGPAPPKKKKTVEMAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSR-------AGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKR 289
BLAST of mRNA_E-siliculosus-1a_F_contig11808.1169.1 vs. uniprot
Match: A0A6H5LA05_9PHAE (S5 DRBM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA05_9PHAE) HSP 1 Score: 249 bits (635), Expect = 2.030e-82 Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1
Query: 46 MAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGA 411
MAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGA
Sbjct: 1 MAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGA 122
BLAST of mRNA_E-siliculosus-1a_F_contig11808.1169.1 vs. uniprot
Match: A0A448Z056_9STRA (S5 DRBM domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z056_9STRA) HSP 1 Score: 124 bits (310), Expect = 2.080e-30 Identity = 68/159 (42.77%), Postives = 96/159 (60.38%), Query Frame = 1
Query: 43 EMAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKR 519
++A G+W E+L+ TDRV+K +GG + +RALV GNL G GF IGKA P A+ A R AK N+ +V+RY+ +L +DLVG+ N KV + R +G+R L +IL MGIT+ K G RN Y+++ A F AL H ++ +A RG R
Sbjct: 266 QLAHGEWGEMLIRTDRVSKMWRGGRVVSFRALVIGGNLRGCAGFGIGKAFEPEDAVEIACRMAK--RNIFFVDRYRGRTLTRDLVGRQNSCKVVL--RTTTNGLRGNPLCCEILKLMGITNVVAKAHGSRNHYNVVRATFKALMTHESLDEVALKRGLR 420
BLAST of mRNA_E-siliculosus-1a_F_contig11808.1169.1 vs. uniprot
Match: A0A7S0YAY2_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0YAY2_9STRA) HSP 1 Score: 123 bits (309), Expect = 3.850e-30 Identity = 68/159 (42.77%), Postives = 96/159 (60.38%), Query Frame = 1
Query: 43 EMAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKR 519
++A G W E+L+ TDRV+K +GG + +RALV GNL G GGF IGK+ P A+ A R AK N+ +V+RY+ +L +DLVG+ N KV + RP +G+R L +IL MGIT+ K G RN +++ A + AL H ++ IA RG R
Sbjct: 289 QLAHGDWGEMLIRTDRVSKMWRGGRVVSFRALVIGGNLRGCGGFGIGKSFEPEDAVEIACRMAK--RNIFFVDRYRGRTLTRDLVGRQNSCKVVL--RPTTNGLRGNPLCCEILKLMGITNVVAKAHGSRNHSNVVRATYKALMTHESLDEIAMKRGLR 443
BLAST of mRNA_E-siliculosus-1a_F_contig11808.1169.1 vs. uniprot
Match: A0A7G8ZJN6_9PROT (30S ribosomal protein S5 n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A7G8ZJN6_9PROT) HSP 1 Score: 101 bits (252), Expect = 8.030e-24 Identity = 62/154 (40.26%), Postives = 84/154 (54.55%), Query Frame = 1
Query: 52 QGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRG 513
Q + + LVH +RV KTVKGG Q+ ALV VG+ G GF GKA AI +A+ +AK +V + + +L D G+H KV + + PPG+G+ AG R +L +G+ D K G N Y+MI A FDAL + SIA RG
Sbjct: 21 QDEIVDKLVHINRVAKTVKGGRNFQFAALVVVGDQKGRVGFGQGKAREVPEAIRKATEEAK--KTMVRIPLREGRTLHHDSPGRHGAGKVILRAAPPGTGVIAGGPMRAVLETLGVQDVVAKSTGTSNPYNMIRATFDALKHQKSPRSIAAKRG 172
BLAST of mRNA_E-siliculosus-1a_F_contig11808.1169.1 vs. uniprot
Match: A0A420WMI4_9PROT (30S ribosomal protein S5 n=4 Tax=Robiginitomaculaceae TaxID=2800062 RepID=A0A420WMI4_9PROT) HSP 1 Score: 101 bits (251), Expect = 1.000e-23 Identity = 61/165 (36.97%), Postives = 91/165 (55.15%), Query Frame = 1
Query: 25 KKKKTVEMAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKR 519
++ K E ++ + LVH +RV KTVKGG + + ALV VG+ G GF GKA AI +A+ +AK ++ V + +L D+ G+H K+ + S PPG+G+ AG R +L +G+ D K +G N Y+M+ A FDAL + IA RGK+
Sbjct: 7 RRNKRDEEQDNEFIDRLVHINRVAKTVKGGRNMSFAALVIVGDEKGRVGFGKGKAREVPEAIRKATEEAK--KTMIRVPLREGRTLHHDVRGRHGAGKIVMRSAPPGTGVIAGGPMRAVLECLGVQDVVGKSVGTSNPYNMVRATFDALKRMESPRMIANKRGKK 169
BLAST of mRNA_E-siliculosus-1a_F_contig11808.1169.1 vs. uniprot
Match: A0A848V710_9PROT (30S ribosomal protein S5 n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V710_9PROT) HSP 1 Score: 100 bits (250), Expect = 1.410e-23 Identity = 59/154 (38.31%), Postives = 88/154 (57.14%), Query Frame = 1
Query: 58 QWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKR 519
++ + LVH +RV KTVKGG + + ALV VG+ G GF GKA AI +A+ +AK ++ V + +L DL G+H K+ + + PPG+G+ AG R +L +G+ D K +G N Y+M+ A FDAL + +IA RGK+
Sbjct: 16 EFIDRLVHINRVAKTVKGGRNMSFAALVVVGDEKGRVGFGKGKAREVPEAIRKATEEAK--RTMIRVPLREGRTLHHDLKGRHGAGKIVMRAAPPGTGVIAGGPMRAVLECLGVQDVVGKSVGTSNPYNMVRATFDALKRAESPRTIAAKRGKK 167
BLAST of mRNA_E-siliculosus-1a_F_contig11808.1169.1 vs. uniprot
Match: A0A3C2E554_9PROT (30S ribosomal protein S5 n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A3C2E554_9PROT) HSP 1 Score: 99.8 bits (247), Expect = 4.800e-23 Identity = 63/157 (40.13%), Postives = 84/157 (53.50%), Query Frame = 1
Query: 43 EMAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRG 513
E ++ + LVH +RV KTVKGG Q+ ALV VG+ G GF GKA AI +A+ +AK +L+ V + +L QD G H KV + + PPG+G+ AG R +L +G+ D K G N Y+MI A FDAL IA RG
Sbjct: 20 EEQSDEFVDKLVHINRVAKTVKGGRNFQFAALVIVGDQKGRVGFGQGKAREVPEAIRKATDEAK--KSLIRVPLREGRTLHQDSRGHHGAGKVVLRAAPPGTGVIAGGPMRAVLETLGVQDVVAKSTGTSNPYNMIRATFDALKHQHSPRHIAAKRG 174
BLAST of mRNA_E-siliculosus-1a_F_contig11808.1169.1 vs. uniprot
Match: RS5_MARMM (30S ribosomal protein S5 n=8 Tax=Maricaulis TaxID=74317 RepID=RS5_MARMM) HSP 1 Score: 99.4 bits (246), Expect = 7.440e-23 Identity = 61/147 (41.50%), Postives = 81/147 (55.10%), Query Frame = 1
Query: 73 LVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRG 513
LVH +RV KTVKGG Q+ ALV VG+ G GF GKA AI +A+ +AK N++ V + +L D G+H KV + + PPG+G+ AG R +L +GI D K +G N Y+MI A DAL S+A RG
Sbjct: 35 LVHINRVAKTVKGGRNFQFAALVVVGDTKGRVGFGQGKAREVPEAIRKATDEAK--KNMIRVPLREGRTLHHDGKGRHGAGKVVLRAAPPGTGVIAGGPMRAVLETLGIQDVVAKSVGTSNPYNMIRATMDALKLQSSPRSVAAKRG 179 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11808.1169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig11808.1169.1 >prot_E-siliculosus-1a_F_contig11808.1169.1 ID=prot_E-siliculosus-1a_F_contig11808.1169.1|Name=mRNA_E-siliculosus-1a_F_contig11808.1169.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=173bp QTDGPAPPKKKKTVEMAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGback to top mRNA from alignment at E-siliculosus-1a_F_contig11808:3..1696- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig11808.1169.1 ID=mRNA_E-siliculosus-1a_F_contig11808.1169.1|Name=mRNA_E-siliculosus-1a_F_contig11808.1169.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1694bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11808:3..1696- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11808:3..1696- >mRNA_E-siliculosus-1a_F_contig11808.1169.1 ID=mRNA_E-siliculosus-1a_F_contig11808.1169.1|Name=mRNA_E-siliculosus-1a_F_contig11808.1169.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1038bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11808:3..1696- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |