mRNA_E-siliculosus-1a_F_contig11797.1153.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11797.1153.1
Unique NamemRNA_E-siliculosus-1a_F_contig11797.1153.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1153.1 vs. uniprot
Match: D1J709_ECTSI (Chloroplast 30S ribosomal protein S1 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J709_ECTSI)

HSP 1 Score: 499 bits (1285), Expect = 4.320e-178
Identity = 256/265 (96.60%), Postives = 262/265 (98.87%), Query Frame = 1
Query:    1 MLLSIATSKFDFNKFGLILSQYSYKVKTNDILAGMVIGVESNYVLVDLGLEQVCFLPLKEISRFPIYNPTELLNINYVGEFLILDIKKKSNRIIISMKRVQSIYLWNRLRQIDFKNITIYAKLEESLMKGKLILFNGLFFFALNINIPKYYLRTNNKNLFMPFKFLEVKDSFHIAQMSSKLAIFSKINKNLVIGPIYLANVTAIKYFGVFVNILGVNCLLHISEIFKKTTQTENLSSLYKLGDQIKLKIISKDIERGRVSVALQN 795
            MLLSIATSKFDFNKFGLILSQYSYKVKTNDILAG++IGVESNYVLVDLGLEQVCFLPLKEISRFPIYNPTELLN+NYVGEFLILDI KKSNRIIISMKRVQSIYLWNRLRQIDFKNITIYAK EESLMKGKLILFNGLFFFALNINIPKYYLRTNNKNLFMPFKFLEVKDSFHIAQMSSKLAIFSKINKNLVIGP YLANVT+IKYFGVFVNILGVNCLLHISEIFKKTTQTENLSSLYKLGDQIKL+I+SKDIERGRVSVALQN
Sbjct:    1 MLLSIATSKFDFNKFGLILSQYSYKVKTNDILAGIIIGVESNYVLVDLGLEQVCFLPLKEISRFPIYNPTELLNVNYVGEFLILDINKKSNRIIISMKRVQSIYLWNRLRQIDFKNITIYAKFEESLMKGKLILFNGLFFFALNINIPKYYLRTNNKNLFMPFKFLEVKDSFHIAQMSSKLAIFSKINKNLVIGPSYLANVTSIKYFGVFVNILGVNCLLHISEIFKKTTQTENLSSLYKLGDQIKLRIVSKDIERGRVSVALQN 265          
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1153.1 vs. uniprot
Match: A0A5A4MJF2_9PHAE (30S ribosomal protein S1 n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A5A4MJF2_9PHAE)

HSP 1 Score: 424 bits (1090), Expect = 2.300e-148
Identity = 216/265 (81.51%), Postives = 238/265 (89.81%), Query Frame = 1
Query:    1 MLLSIATSKFDFNKFGLILSQYSYKVKTNDILAGMVIGVESNYVLVDLGLEQVCFLPLKEIS-RFPIYNPTELLNINYVGEFLILDIKKKSNRIIISMKRVQSIYLWNRLRQIDFKNITIYAKLEESLMKGKLILFNGLFFFALNINIPKYYLRTNNKNLFMPFKFLEVKDSFHIAQMSSKLAIFSKINKNLVIGPIYLANVTAIKYFGVFVNILGVNCLLHISEIFKKTTQTENLSSLYKLGDQIKLKIISKDIERGRVSVALQ 792
            MLL I TSKFDFNKFGLILS+YSYKVKT+DILAG++IG+ESNY LVDLGLEQVCFLPLKEIS   PI  P +LLN+N +GEFLILDI + SNRI++SMKRVQSIYLWNRLRQIDF NITIYAK  +SL KGKLI+FNGL FF LNINIPKYYLR  NKNLFMPFKFLEVKD FHIA +SSKLA+F+K+NKNLV GP YL NVT+IKYFGVFVNILGVNCLLHISEIFKK  +T+NLSSLYKLGDQI+LKIISKDIERGRVSVAL+
Sbjct:    1 MLLYIVTSKFDFNKFGLILSKYSYKVKTDDILAGIIIGIESNYALVDLGLEQVCFLPLKEISISSPISGPIDLLNVNSIGEFLILDINQNSNRIMVSMKRVQSIYLWNRLRQIDFSNITIYAKFNKSLPKGKLIIFNGLLFFVLNINIPKYYLRAKNKNLFMPFKFLEVKDYFHIAHISSKLAVFNKVNKNLVSGPTYLGNVTSIKYFGVFVNILGVNCLLHISEIFKKKNETQNLSSLYKLGDQIRLKIISKDIERGRVSVALE 265          
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1153.1 vs. uniprot
Match: A0A6B7EVE1_9PHAE (30S ribosomal protein S1 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EVE1_9PHAE)

HSP 1 Score: 419 bits (1077), Expect = 2.200e-146
Identity = 210/265 (79.25%), Postives = 237/265 (89.43%), Query Frame = 1
Query:    1 MLLSIATSKFDFNKFGLILSQYSYKVKTNDILAGMVIGVESNYVLVDLGLEQVCFLPLKEISRFPIYNPTELLNINYVGEFLILDIKKKSNRIIISMKRVQSIYLWNRLRQIDFKNITIYAKLEESLMKGKLILFNGLFFFALNINIPKYYLRTNNKNLFMPFKFLEVKDSFHIAQMSSKLAIFSKINKNLVIGPIYLANVTAIKYFGVFVNILGVNCLLHISEIFKKTTQTENLSSLYKLGDQIKLKIISKDIERGRVSVALQN 795
            MLLSI TSKFDFNKFGLILS+YSYK+KTNDILAG+V+GVESNYVLVD+GL+QVCFLPLKEIS  PI    +LLNINY+GEFLIL+I K SNRII+SMKRVQSIYLWNRLRQIDFKNITIYAK  ESL KGKLI F+ L FF LNINIPKYYL+ NN  LF+PFKFLE+KDSFHIA +SSKLA+F+K+N+NLVIGP YL NVT+IKYFGVF+NILG+NCLLHISEIF+K  QT+N+SS YKLGDQI LKIISKD+ERGRV VAL +
Sbjct:    1 MLLSITTSKFDFNKFGLILSKYSYKIKTNDILAGIVVGVESNYVLVDVGLDQVCFLPLKEISISPITKKIDLLNINYIGEFLILNINKNSNRIIVSMKRVQSIYLWNRLRQIDFKNITIYAKFGESLGKGKLITFDSLSFFVLNINIPKYYLKLNNNKLFIPFKFLEIKDSFHIAHISSKLAVFNKVNRNLVIGPTYLGNVTSIKYFGVFINILGINCLLHISEIFQKNEQTQNISSFYKLGDQIPLKIISKDLERGRVLVALDS 265          
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1153.1 vs. uniprot
Match: A0A1I9LVS8_9PHAE (30S ribosomal protein S1 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVS8_9PHAE)

HSP 1 Score: 408 bits (1048), Expect = 5.530e-142
Identity = 205/265 (77.36%), Postives = 231/265 (87.17%), Query Frame = 1
Query:    1 MLLSIATSKFDFNKFGLILSQYSYKVKTNDILAGMVIGVESNYVLVDLGLEQVCFLPLKEISRFPIYNPTELLNINYVGEFLILDIKKKSNRIIISMKRVQSIYLWNRLRQIDFKNITIYAKLEESLMKGKLILFNGLFFFALNINIPKYYLRTNNKNLFMPFKFLEVKDSFHIAQMSSKLAIFSKINKNLVIGPIYLANVTAIKYFGVFVNILGVNCLLHISEIFKKTTQTENLSSLYKLGDQIKLKIISKDIERGRVSVALQN 795
            ML+ +  SKFDFNKFGLILS+YSYKVKTNDILAG++I VESNY LVDLGLE+VCFLP  EIS   I +P++LL +NY+GEFLILD+   SNRII+S+K VQSIYLWNRLRQIDF N+TIYAK E +L+KGKLI FNGLFFF LNI+IPKYY R NNKNLF+PFKFLE+KDSFHI  +SSKLAIF+KINKNLVIGPIYL  V +IKYFGVFVNILG+NCLLHISEI KK  QTENLSSLYK GDQI LKIISKDIERGR+SVAL +
Sbjct:    1 MLICVVVSKFDFNKFGLILSKYSYKVKTNDILAGIIIAVESNYALVDLGLEKVCFLPFDEISISTISDPSDLLKLNYIGEFLILDMNNNSNRIIVSIKGVQSIYLWNRLRQIDFANLTIYAKFERNLIKGKLINFNGLFFFVLNIHIPKYYQRVNNKNLFIPFKFLEIKDSFHIGHVSSKLAIFNKINKNLVIGPIYLGTVISIKYFGVFVNILGINCLLHISEILKKNIQTENLSSLYKRGDQINLKIISKDIERGRISVALSS 265          
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1153.1 vs. uniprot
Match: A0A0R6M9B1_UNDPI (30S ribosomal protein S1 n=11 Tax=Laminariales TaxID=2886 RepID=A0A0R6M9B1_UNDPI)

HSP 1 Score: 389 bits (1000), Expect = 1.120e-134
Identity = 191/265 (72.08%), Postives = 229/265 (86.42%), Query Frame = 1
Query:    1 MLLSIATSKFDFNKFGLILSQYSYKVKTNDILAGMVIGVESNYVLVDLGLEQVCFLPLKEISRFPIYNPTELLNINYVGEFLILDIKKKSNRIIISMKRVQSIYLWNRLRQIDFKNITIYAKLEESLMKGKLILFNGLFFFALNINIPKYYLRTNNKNLFMPFKFLEVKDSFHIAQMSSKLAIFSKINKNLVIGPIYLANVTAIKYFGVFVNILGVNCLLHISEIFKKTTQTENLSSLYKLGDQIKLKIISKDIERGRVSVALQN 795
            M L   TSKFDFNKFGLILS+YSY++K NDILAG++IGVESNY LVDLGLEQ+CFLPLKEIS +P  +P+ELLN N+VGEFLILDI    NRII+S+KR++SIYLWNRLRQIDF N+TIYAK+E+ L KGKL++FNGL FF LN NIPKYYLRTNNKNLFMPFKFLE+KD FHIA +SSKLAIFSK+NKNL IG IY+ N+T+IK FG+F+N+LG+ C LH SEI +K ++T NL+SLYKLGDQI +KII KD ERGR+S+ L++
Sbjct:    1 MPLPTVTSKFDFNKFGLILSKYSYQIKKNDILAGIIIGVESNYALVDLGLEQICFLPLKEISIYPTIDPSELLNTNFVGEFLILDITNNHNRIIVSLKRLESIYLWNRLRQIDFTNMTIYAKIEKPLGKGKLVIFNGLNFFVLNSNIPKYYLRTNNKNLFMPFKFLEIKDYFHIAHVSSKLAIFSKVNKNLSIGTIYIGNITSIKDFGIFINVLGIKCFLHSSEIPQKQSKTTNLASLYKLGDQILIKIIYKDTERGRISLTLES 265          
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1153.1 vs. uniprot
Match: A0A5B9RE09_9PHAE (30S ribosomal protein S1 n=2 Tax=Laminariales TaxID=2886 RepID=A0A5B9RE09_9PHAE)

HSP 1 Score: 386 bits (992), Expect = 1.850e-133
Identity = 189/265 (71.32%), Postives = 227/265 (85.66%), Query Frame = 1
Query:    1 MLLSIATSKFDFNKFGLILSQYSYKVKTNDILAGMVIGVESNYVLVDLGLEQVCFLPLKEISRFPIYNPTELLNINYVGEFLILDIKKKSNRIIISMKRVQSIYLWNRLRQIDFKNITIYAKLEESLMKGKLILFNGLFFFALNINIPKYYLRTNNKNLFMPFKFLEVKDSFHIAQMSSKLAIFSKINKNLVIGPIYLANVTAIKYFGVFVNILGVNCLLHISEIFKKTTQTENLSSLYKLGDQIKLKIISKDIERGRVSVALQN 795
            M +   TSK DFNKFGLILS+YSY++K NDILAG++IG+ESNY LVDLGLEQ+CFLPLKEIS +P  +P ELLN N+VGEFLI DI   S+RII+S+KR++SIYLWNRLRQIDF N+TIYAK+++SL KGKL++FNGL FF LN NIPKYYLRTNNKNLFMPFKFLEVKD FHIA +SS+LAIFSK+NKNL IG IYL N+T+I+ FG+F+N+LG+ C LHISEI +K  +T NL SLYKLGDQI +KII KD ERGR+SV L++
Sbjct:    1 MSIPTVTSKLDFNKFGLILSKYSYQIKKNDILAGIIIGIESNYALVDLGLEQICFLPLKEISIYPTMDPRELLNTNFVGEFLIFDIINNSSRIIVSLKRLESIYLWNRLRQIDFTNMTIYAKIQKSLGKGKLVIFNGLRFFVLNSNIPKYYLRTNNKNLFMPFKFLEVKDYFHIAHVSSRLAIFSKVNKNLSIGKIYLGNITSIRGFGIFINVLGIKCFLHISEISQKHNKTPNLGSLYKLGDQIPIKIIYKDTERGRISVTLES 265          
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1153.1 vs. uniprot
Match: A0A8F0FAQ9_9PHAE (Ribosomal protein S1 n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0FAQ9_9PHAE)

HSP 1 Score: 380 bits (976), Expect = 5.040e-131
Identity = 187/264 (70.83%), Postives = 225/264 (85.23%), Query Frame = 1
Query:    1 MLLSIATSKFDFNKFGLILSQYSYKVKTNDILAGMVIGVESNYVLVDLGLEQVCFLPLKEISRFPIYNPTELLNINYVGEFLILDIKKKSNRIIISMKRVQSIYLWNRLRQIDFKNITIYAKLEESLMKGKLILFNGLFFFALNINIPKYYLRTNNKNLFMPFKFLEVKDSFHIAQMSSKLAIFSKINKNLVIGPIYLANVTAIKYFGVFVNILGVNCLLHISEIFKKTTQTENLSSLYKLGDQIKLKIISKDIERGRVSVALQ 792
            M L   TSKFDFNKFGLILS+YSY++K NDILAG++IG+ESNY LVDLGLEQ+CFLPLKEIS +P+ N  ELLN N+VGEFLILDI    +RII+S+KR++SIYLWNRLRQ+DF N+TIYAK+E+ L KGKL++FNGL FF LN+NIPKYYLRTN KNLFMPFKFLEVKD FHIAQ+SS+LAIF+K+NKNL I  IY+ N+T+IK FG+F+N+LG+ CLLHISEI +   +  NL SLYKLGDQI +KII KD ERGR+SV L+
Sbjct:    1 MPLPTVTSKFDFNKFGLILSKYSYQIKKNDILAGIIIGLESNYALVDLGLEQICFLPLKEISIYPLVNTRELLNTNFVGEFLILDITNNHSRIIVSLKRLESIYLWNRLRQLDFTNMTIYAKIEKPLGKGKLVIFNGLKFFVLNLNIPKYYLRTNKKNLFMPFKFLEVKDYFHIAQVSSRLAIFTKVNKNLSIRKIYIGNITSIKDFGIFINVLGIKCLLHISEISQNHNKIPNLVSLYKLGDQIPIKIIYKDTERGRISVTLK 264          
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1153.1 vs. uniprot
Match: A0A8F0F7Y6_9PHAE (Ribosomal protein S1 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7Y6_9PHAE)

HSP 1 Score: 372 bits (954), Expect = 1.050e-127
Identity = 185/263 (70.34%), Postives = 224/263 (85.17%), Query Frame = 1
Query:    1 MLLSIATSKFDFNKFGLILSQYSYKVKTNDILAGMVIGVESNYVLVDLGLEQVCFLPLKEISRFPIYNPTELLNINYVGEFLILDIKKKSNRIIISMKRVQSIYLWNRLRQIDFKNITIYAKLEESLMKGKLILFNGLFFFALNINIPKYYLRTNNKNLFMPFKFLEVKDSFHIAQMSSKLAIFSKINKNLVIGPIYLANVTAIKYFGVFVNILGVNCLLHISEIFKKTTQTENLSSLYKLGDQIKLKIISKDIERGRVSVAL 789
            MLLSI TSKFDFNKFGLILS+YSY++K NDILAG++IG+ESNY LVDLGL+Q+CFLP++E++ +   +P +LLNIN++GEFLIL+I K  +RII+S+KR++SIYLWNRLRQ+DF NITIYAK+E+SL KGKLI FNGL FF LN NIPKYYLR NNKNLFMPFKFLEVKDSFHIA  +SKLAIFSK+++NL IG  YL  +T+IK FG+FVNI G+ CLLHISEI +K ++   L S Y+LGDQI LKII KD ERGR+SV L
Sbjct:    1 MLLSIVTSKFDFNKFGLILSKYSYQIKKNDILAGIIIGIESNYALVDLGLDQICFLPIEELAIYLTVDPHKLLNINFIGEFLILNITKNQSRIILSLKRIESIYLWNRLRQLDFTNITIYAKIEKSLGKGKLINFNGLVFFVLNSNIPKYYLRGNNKNLFMPFKFLEVKDSFHIAHTNSKLAIFSKVSRNLAIGSNYLGTITSIKDFGIFVNITGIKCLLHISEISQKQSKKPKLISSYRLGDQIWLKIIYKDTERGRISVTL 263          
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1153.1 vs. uniprot
Match: A0A8F0F8H5_MACPY (Ribosomal protein S1 n=13 Tax=Laminariales TaxID=2886 RepID=A0A8F0F8H5_MACPY)

HSP 1 Score: 371 bits (952), Expect = 2.430e-127
Identity = 184/266 (69.17%), Postives = 222/266 (83.46%), Query Frame = 1
Query:    1 MLLSIATSKFDFNKFGLILSQYSYKVKTNDILAGMVIGVESNYVLVDLGLEQVCFLPLKEISRFPIYNPTELLNINYVGEFLILDIKKKSNRIIISMKRVQSIYLWNRLRQIDFKNITIYAKLEESLMKGKLILFNGLFFFALNINIPKYYLRTNNKNLFMPFKFLEVKDSFHIAQMSSKLAIFSKINKNLVIGPIYLANVTAIKYFGVFVNILGVNCLLHISEIFKKTTQTENLSSLYK--LGDQIKLKIISKDIERGRVSVALQ 792
            M L+  TSKFDFNKFGLILS+YSY++K NDILAG++IG+ESNY LVDLGLEQ+CFLP+KEIS +P  +P ELLN N+V EFLILDI    +RII+S+KR++SIYLWNRLRQIDF N+TIYAK+E+ L KGKL++FNGL FF LN NIPKYYLRT NKNLFMPFKFLEVKD FHIA +SS+LAIFSK+NKNL +   Y  N+TAI+ FG+F+N+LG+ C LHISEIF+   +  N+SSLYK  LGDQI +KII KD ERGR+SV L+
Sbjct:    1 MPLTTVTSKFDFNKFGLILSKYSYQIKKNDILAGIIIGIESNYALVDLGLEQICFLPIKEISIYPTIDPRELLNSNFVSEFLILDITNDHSRIIVSLKRLESIYLWNRLRQIDFPNMTIYAKIEKPLGKGKLVIFNGLRFFVLNANIPKYYLRTKNKNLFMPFKFLEVKDYFHIAHVSSRLAIFSKVNKNLSLRETYRGNITAIRDFGIFINVLGIKCFLHISEIFQNHNKITNISSLYKYKLGDQISIKIIYKDTERGRISVTLK 266          
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1153.1 vs. uniprot
Match: A0A8F0F9U3_9PHAE (Ribosomal protein S1 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9U3_9PHAE)

HSP 1 Score: 362 bits (930), Expect = 5.400e-124
Identity = 179/263 (68.06%), Postives = 216/263 (82.13%), Query Frame = 1
Query:    1 MLLSIATSKFDFNKFGLILSQYSYKVKTNDILAGMVIGVESNYVLVDLGLEQVCFLPLKEISRFPIYNPTELLNINYVGEFLILDIKKKSNRIIISMKRVQSIYLWNRLRQIDFKNITIYAKLEESLMKGKLILFNGLFFFALNINIPKYYLRTNNKNLFMPFKFLEVKDSFHIAQMSSKLAIFSKINKNLVIGPIYLANVTAIKYFGVFVNILGVNCLLHISEIFKKTTQTENLSSLYKLGDQIKLKIISKDIERGRVSVAL 789
            M LSI  S FDFNKFGL+LS+YSY+ K NDILAG+VIG+ESNY LVD GLEQ+CFLPLKEIS  P  +  E LNIN++GEF ILDI  + NRIIIS++R++SIYLWNRLRQIDF NITIYAK+E+S+ KGKL +FNGL  F LN NIPKYYLR + KN+FMPFKFLEVKD +H+A +SSKLAIFSK+N NL IG IY  N+ +I+ FGVF+NILG+ CLLHISEI +K  +  NL+ LYK+GDQ+KLK+I KD +RGR+SV L
Sbjct:    1 MPLSIVPSTFDFNKFGLLLSKYSYQAKKNDILAGIVIGIESNYALVDFGLEQICFLPLKEISICPTLDLREFLNINFIGEFSILDITNRQNRIIISLRRIESIYLWNRLRQIDFSNITIYAKIEKSIGKGKLTIFNGLLLFVLNSNIPKYYLRIDRKNIFMPFKFLEVKDYYHVAHISSKLAIFSKVNNNLTIGLIYSGNIVSIRDFGVFINILGIKCLLHISEISQKQKKVTNLNLLYKVGDQLKLKVIYKDTKRGRISVTL 263          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J709_ECTSI4.320e-17896.60Chloroplast 30S ribosomal protein S1 n=2 Tax=Ectoc... [more]
A0A5A4MJF2_9PHAE2.300e-14881.5130S ribosomal protein S1 n=5 Tax=Scytosiphonaceae ... [more]
A0A6B7EVE1_9PHAE2.200e-14679.2530S ribosomal protein S1 n=1 Tax=Cladosiphon okamu... [more]
A0A1I9LVS8_9PHAE5.530e-14277.3630S ribosomal protein S1 n=1 Tax=Pleurocladia lacu... [more]
A0A0R6M9B1_UNDPI1.120e-13472.0830S ribosomal protein S1 n=11 Tax=Laminariales Tax... [more]
A0A5B9RE09_9PHAE1.850e-13371.3230S ribosomal protein S1 n=2 Tax=Laminariales TaxI... [more]
A0A8F0FAQ9_9PHAE5.040e-13170.83Ribosomal protein S1 n=2 Tax=Ecklonia TaxID=105406... [more]
A0A8F0F7Y6_9PHAE1.050e-12770.34Ribosomal protein S1 n=2 Tax=Laminariales TaxID=28... [more]
A0A8F0F8H5_MACPY2.430e-12769.17Ribosomal protein S1 n=13 Tax=Laminariales TaxID=2... [more]
A0A8F0F9U3_9PHAE5.400e-12468.06Ribosomal protein S1 n=1 Tax=Chorda asiatica TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11797contigE-siliculosus-1a_F_contig11797:666..1463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size798
Model size798
Exons1
Hectar predicted targeting categoryother localisation
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Best eggNOG OGNA|NA|NA
Best tax levelSynechococcus
COG Functional cat.J
EggNOG OGs1G11B@1117,1GYER@1129,COG0539@1,COG0539@2
EggNOG free text desc.ribosomal protein S1
KEGG ModuleM00178
KEGG Pathwayko03010,map03010
KEGG koko:K02945
Preferred namerps1a
Seed eggNOG ortholog195253.Syn6312_0686
Seed ortholog evalue5e-28
Seed ortholog score131.7
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927698.924185-CDS-E-siliculosus-1a_F_contig11797:665..14631622927698.924185-CDS-E-siliculosus-1a_F_contig11797:665..1463Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11797 666..1463 +
1696318643.2829447-CDS-E-siliculosus-1a_F_contig11797:665..14631696318643.2829447-CDS-E-siliculosus-1a_F_contig11797:665..1463Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11797 666..1463 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11797.1153.1prot_E-siliculosus-1a_F_contig11797.1153.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11797 666..1463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11797.1153.1

>prot_E-siliculosus-1a_F_contig11797.1153.1 ID=prot_E-siliculosus-1a_F_contig11797.1153.1|Name=mRNA_E-siliculosus-1a_F_contig11797.1153.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=266bp
MLLSIATSKFDFNKFGLILSQYSYKVKTNDILAGMVIGVESNYVLVDLGL
EQVCFLPLKEISRFPIYNPTELLNINYVGEFLILDIKKKSNRIIISMKRV
QSIYLWNRLRQIDFKNITIYAKLEESLMKGKLILFNGLFFFALNINIPKY
YLRTNNKNLFMPFKFLEVKDSFHIAQMSSKLAIFSKINKNLVIGPIYLAN
VTAIKYFGVFVNILGVNCLLHISEIFKKTTQTENLSSLYKLGDQIKLKII
SKDIERGRVSVALQN*
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mRNA from alignment at E-siliculosus-1a_F_contig11797:666..1463+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11797.1153.1 ID=mRNA_E-siliculosus-1a_F_contig11797.1153.1|Name=mRNA_E-siliculosus-1a_F_contig11797.1153.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=798bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11797:666..1463+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTATTATCTATTGCTACTTCAAAATTTGATTTTAATAAGTTTGGTCT GATTCTATCTCAATATAGTTATAAAGTAAAGACAAATGATATATTAGCTG GAATGGTAATAGGGGTCGAATCAAATTATGTGTTAGTTGATCTTGGGCTA GAGCAAGTATGTTTTTTACCATTAAAAGAAATCTCTCGTTTTCCAATATA TAATCCAACTGAACTCTTAAATATTAATTATGTCGGGGAATTTTTAATCC TTGATATTAAGAAAAAGTCGAATCGAATTATTATTTCAATGAAGCGTGTA CAATCTATTTATTTATGGAACCGGCTACGACAAATAGATTTTAAAAATAT AACAATTTATGCTAAATTGGAAGAGTCGTTAATGAAAGGAAAATTAATAC TTTTTAACGGGTTATTTTTTTTTGCATTAAATATAAATATCCCGAAATAT TATCTAAGAACGAATAATAAAAACCTCTTTATGCCCTTTAAATTTTTAGA AGTTAAGGATTCTTTTCATATTGCGCAGATGAGTTCAAAATTAGCTATTT TTAGTAAAATAAATAAAAATTTAGTAATTGGACCCATCTATTTAGCGAAT GTTACTGCAATTAAATATTTTGGTGTTTTCGTAAATATTCTAGGAGTAAA TTGTTTATTACATATTTCTGAAATTTTCAAAAAAACTACACAAACAGAAA ACCTTTCATCATTATATAAACTTGGTGATCAAATAAAGTTAAAGATTATT TCAAAAGATATAGAACGAGGTAGAGTTTCAGTAGCTTTACAAAATTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11797:666..1463+

>mRNA_E-siliculosus-1a_F_contig11797.1153.1 ID=mRNA_E-siliculosus-1a_F_contig11797.1153.1|Name=mRNA_E-siliculosus-1a_F_contig11797.1153.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1596bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11797:666..1463+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTATTATCTATTGCTACTTCAAAATTTGATTTTAATAAGTTTGGTCT
GATTCTATCTCAATATAGTTATAAAGTAAAGACAAATGATATATTAGCTG
GAATGGTAATAGGGGTCGAATCAAATTATGTGTTAGTTGATCTTGGGCTA
GAGCAAGTATGTTTTTTACCATTAAAAGAAATCTCTCGTTTTCCAATATA
TAATCCAACTGAACTCTTAAATATTAATTATGTCGGGGAATTTTTAATCC
TTGATATTAAGAAAAAGTCGAATCGAATTATTATTTCAATGAAGCGTGTA
CAATCTATTTATTTATGGAACCGGCTACGACAAATAGATTTTAAAAATAT
AACAATTTATGCTAAATTGGAAGAGTCGTTAATGAAAGGAAAATTAATAC
TTTTTAACGGGTTATTTTTTTTTGCATTAAATATAAATATCCCGAAATAT
TATCTAAGAACGAATAATAAAAACCTCTTTATGCCCTTTAAATTTTTAGA
AGTTAAGGATTCTTTTCATATTGCGCAGATGAGTTCAAAATTAGCTATTT
TTAGTAAAATAAATAAAAATTTAGTAATTGGACCCATCTATTTAGCGAAT
GTTACTGCAATTAAATATTTTGGTGTTTTCGTAAATATTCTAGGAGTAAA
TTGTTTATTACATATTTCTGAAATTTTCAAAAAAACTACACAAACAGAAA
ACCTTTCATCATTATATAAACTTGGTGATCAAATAAAGTTAAAGATTATT
TCAAAAGATATAGAACGAGGTAGAGTTTCAGTAGCTTTACAAAATTGAAT
GTTATTATCTATTGCTACTTCAAAATTTGATTTTAATAAGTTTGGTCTGA
TTCTATCTCAATATAGTTATAAAGTAAAGACAAATGATATATTAGCTGGA
ATGGTAATAGGGGTCGAATCAAATTATGTGTTAGTTGATCTTGGGCTAGA
GCAAGTATGTTTTTTACCATTAAAAGAAATCTCTCGTTTTCCAATATATA
ATCCAACTGAACTCTTAAATATTAATTATGTCGGGGAATTTTTAATCCTT
GATATTAAGAAAAAGTCGAATCGAATTATTATTTCAATGAAGCGTGTACA
ATCTATTTATTTATGGAACCGGCTACGACAAATAGATTTTAAAAATATAA
CAATTTATGCTAAATTGGAAGAGTCGTTAATGAAAGGAAAATTAATACTT
TTTAACGGGTTATTTTTTTTTGCATTAAATATAAATATCCCGAAATATTA
TCTAAGAACGAATAATAAAAACCTCTTTATGCCCTTTAAATTTTTAGAAG
TTAAGGATTCTTTTCATATTGCGCAGATGAGTTCAAAATTAGCTATTTTT
AGTAAAATAAATAAAAATTTAGTAATTGGACCCATCTATTTAGCGAATGT
TACTGCAATTAAATATTTTGGTGTTTTCGTAAATATTCTAGGAGTAAATT
GTTTATTACATATTTCTGAAATTTTCAAAAAAACTACACAAACAGAAAAC
CTTTCATCATTATATAAACTTGGTGATCAAATAAAGTTAAAGATTATTTC
AAAAGATATAGAACGAGGTAGAGTTTCAGTAGCTTTACAAAATTGA
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