mRNA_E-siliculosus-1a_F_contig11797.1153.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1153.1 vs. uniprot
Match: D1J709_ECTSI (Chloroplast 30S ribosomal protein S1 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J709_ECTSI) HSP 1 Score: 499 bits (1285), Expect = 4.320e-178 Identity = 256/265 (96.60%), Postives = 262/265 (98.87%), Query Frame = 1
Query: 1 MLLSIATSKFDFNKFGLILSQYSYKVKTNDILAGMVIGVESNYVLVDLGLEQVCFLPLKEISRFPIYNPTELLNINYVGEFLILDIKKKSNRIIISMKRVQSIYLWNRLRQIDFKNITIYAKLEESLMKGKLILFNGLFFFALNINIPKYYLRTNNKNLFMPFKFLEVKDSFHIAQMSSKLAIFSKINKNLVIGPIYLANVTAIKYFGVFVNILGVNCLLHISEIFKKTTQTENLSSLYKLGDQIKLKIISKDIERGRVSVALQN 795
MLLSIATSKFDFNKFGLILSQYSYKVKTNDILAG++IGVESNYVLVDLGLEQVCFLPLKEISRFPIYNPTELLN+NYVGEFLILDI KKSNRIIISMKRVQSIYLWNRLRQIDFKNITIYAK EESLMKGKLILFNGLFFFALNINIPKYYLRTNNKNLFMPFKFLEVKDSFHIAQMSSKLAIFSKINKNLVIGP YLANVT+IKYFGVFVNILGVNCLLHISEIFKKTTQTENLSSLYKLGDQIKL+I+SKDIERGRVSVALQN
Sbjct: 1 MLLSIATSKFDFNKFGLILSQYSYKVKTNDILAGIIIGVESNYVLVDLGLEQVCFLPLKEISRFPIYNPTELLNVNYVGEFLILDINKKSNRIIISMKRVQSIYLWNRLRQIDFKNITIYAKFEESLMKGKLILFNGLFFFALNINIPKYYLRTNNKNLFMPFKFLEVKDSFHIAQMSSKLAIFSKINKNLVIGPSYLANVTSIKYFGVFVNILGVNCLLHISEIFKKTTQTENLSSLYKLGDQIKLRIVSKDIERGRVSVALQN 265
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1153.1 vs. uniprot
Match: A0A5A4MJF2_9PHAE (30S ribosomal protein S1 n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A5A4MJF2_9PHAE) HSP 1 Score: 424 bits (1090), Expect = 2.300e-148 Identity = 216/265 (81.51%), Postives = 238/265 (89.81%), Query Frame = 1
Query: 1 MLLSIATSKFDFNKFGLILSQYSYKVKTNDILAGMVIGVESNYVLVDLGLEQVCFLPLKEIS-RFPIYNPTELLNINYVGEFLILDIKKKSNRIIISMKRVQSIYLWNRLRQIDFKNITIYAKLEESLMKGKLILFNGLFFFALNINIPKYYLRTNNKNLFMPFKFLEVKDSFHIAQMSSKLAIFSKINKNLVIGPIYLANVTAIKYFGVFVNILGVNCLLHISEIFKKTTQTENLSSLYKLGDQIKLKIISKDIERGRVSVALQ 792
MLL I TSKFDFNKFGLILS+YSYKVKT+DILAG++IG+ESNY LVDLGLEQVCFLPLKEIS PI P +LLN+N +GEFLILDI + SNRI++SMKRVQSIYLWNRLRQIDF NITIYAK +SL KGKLI+FNGL FF LNINIPKYYLR NKNLFMPFKFLEVKD FHIA +SSKLA+F+K+NKNLV GP YL NVT+IKYFGVFVNILGVNCLLHISEIFKK +T+NLSSLYKLGDQI+LKIISKDIERGRVSVAL+
Sbjct: 1 MLLYIVTSKFDFNKFGLILSKYSYKVKTDDILAGIIIGIESNYALVDLGLEQVCFLPLKEISISSPISGPIDLLNVNSIGEFLILDINQNSNRIMVSMKRVQSIYLWNRLRQIDFSNITIYAKFNKSLPKGKLIIFNGLLFFVLNINIPKYYLRAKNKNLFMPFKFLEVKDYFHIAHISSKLAVFNKVNKNLVSGPTYLGNVTSIKYFGVFVNILGVNCLLHISEIFKKKNETQNLSSLYKLGDQIRLKIISKDIERGRVSVALE 265
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1153.1 vs. uniprot
Match: A0A6B7EVE1_9PHAE (30S ribosomal protein S1 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EVE1_9PHAE) HSP 1 Score: 419 bits (1077), Expect = 2.200e-146 Identity = 210/265 (79.25%), Postives = 237/265 (89.43%), Query Frame = 1
Query: 1 MLLSIATSKFDFNKFGLILSQYSYKVKTNDILAGMVIGVESNYVLVDLGLEQVCFLPLKEISRFPIYNPTELLNINYVGEFLILDIKKKSNRIIISMKRVQSIYLWNRLRQIDFKNITIYAKLEESLMKGKLILFNGLFFFALNINIPKYYLRTNNKNLFMPFKFLEVKDSFHIAQMSSKLAIFSKINKNLVIGPIYLANVTAIKYFGVFVNILGVNCLLHISEIFKKTTQTENLSSLYKLGDQIKLKIISKDIERGRVSVALQN 795
MLLSI TSKFDFNKFGLILS+YSYK+KTNDILAG+V+GVESNYVLVD+GL+QVCFLPLKEIS PI +LLNINY+GEFLIL+I K SNRII+SMKRVQSIYLWNRLRQIDFKNITIYAK ESL KGKLI F+ L FF LNINIPKYYL+ NN LF+PFKFLE+KDSFHIA +SSKLA+F+K+N+NLVIGP YL NVT+IKYFGVF+NILG+NCLLHISEIF+K QT+N+SS YKLGDQI LKIISKD+ERGRV VAL +
Sbjct: 1 MLLSITTSKFDFNKFGLILSKYSYKIKTNDILAGIVVGVESNYVLVDVGLDQVCFLPLKEISISPITKKIDLLNINYIGEFLILNINKNSNRIIVSMKRVQSIYLWNRLRQIDFKNITIYAKFGESLGKGKLITFDSLSFFVLNINIPKYYLKLNNNKLFIPFKFLEIKDSFHIAHISSKLAVFNKVNRNLVIGPTYLGNVTSIKYFGVFINILGINCLLHISEIFQKNEQTQNISSFYKLGDQIPLKIISKDLERGRVLVALDS 265
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1153.1 vs. uniprot
Match: A0A1I9LVS8_9PHAE (30S ribosomal protein S1 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVS8_9PHAE) HSP 1 Score: 408 bits (1048), Expect = 5.530e-142 Identity = 205/265 (77.36%), Postives = 231/265 (87.17%), Query Frame = 1
Query: 1 MLLSIATSKFDFNKFGLILSQYSYKVKTNDILAGMVIGVESNYVLVDLGLEQVCFLPLKEISRFPIYNPTELLNINYVGEFLILDIKKKSNRIIISMKRVQSIYLWNRLRQIDFKNITIYAKLEESLMKGKLILFNGLFFFALNINIPKYYLRTNNKNLFMPFKFLEVKDSFHIAQMSSKLAIFSKINKNLVIGPIYLANVTAIKYFGVFVNILGVNCLLHISEIFKKTTQTENLSSLYKLGDQIKLKIISKDIERGRVSVALQN 795
ML+ + SKFDFNKFGLILS+YSYKVKTNDILAG++I VESNY LVDLGLE+VCFLP EIS I +P++LL +NY+GEFLILD+ SNRII+S+K VQSIYLWNRLRQIDF N+TIYAK E +L+KGKLI FNGLFFF LNI+IPKYY R NNKNLF+PFKFLE+KDSFHI +SSKLAIF+KINKNLVIGPIYL V +IKYFGVFVNILG+NCLLHISEI KK QTENLSSLYK GDQI LKIISKDIERGR+SVAL +
Sbjct: 1 MLICVVVSKFDFNKFGLILSKYSYKVKTNDILAGIIIAVESNYALVDLGLEKVCFLPFDEISISTISDPSDLLKLNYIGEFLILDMNNNSNRIIVSIKGVQSIYLWNRLRQIDFANLTIYAKFERNLIKGKLINFNGLFFFVLNIHIPKYYQRVNNKNLFIPFKFLEIKDSFHIGHVSSKLAIFNKINKNLVIGPIYLGTVISIKYFGVFVNILGINCLLHISEILKKNIQTENLSSLYKRGDQINLKIISKDIERGRISVALSS 265
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1153.1 vs. uniprot
Match: A0A0R6M9B1_UNDPI (30S ribosomal protein S1 n=11 Tax=Laminariales TaxID=2886 RepID=A0A0R6M9B1_UNDPI) HSP 1 Score: 389 bits (1000), Expect = 1.120e-134 Identity = 191/265 (72.08%), Postives = 229/265 (86.42%), Query Frame = 1
Query: 1 MLLSIATSKFDFNKFGLILSQYSYKVKTNDILAGMVIGVESNYVLVDLGLEQVCFLPLKEISRFPIYNPTELLNINYVGEFLILDIKKKSNRIIISMKRVQSIYLWNRLRQIDFKNITIYAKLEESLMKGKLILFNGLFFFALNINIPKYYLRTNNKNLFMPFKFLEVKDSFHIAQMSSKLAIFSKINKNLVIGPIYLANVTAIKYFGVFVNILGVNCLLHISEIFKKTTQTENLSSLYKLGDQIKLKIISKDIERGRVSVALQN 795
M L TSKFDFNKFGLILS+YSY++K NDILAG++IGVESNY LVDLGLEQ+CFLPLKEIS +P +P+ELLN N+VGEFLILDI NRII+S+KR++SIYLWNRLRQIDF N+TIYAK+E+ L KGKL++FNGL FF LN NIPKYYLRTNNKNLFMPFKFLE+KD FHIA +SSKLAIFSK+NKNL IG IY+ N+T+IK FG+F+N+LG+ C LH SEI +K ++T NL+SLYKLGDQI +KII KD ERGR+S+ L++
Sbjct: 1 MPLPTVTSKFDFNKFGLILSKYSYQIKKNDILAGIIIGVESNYALVDLGLEQICFLPLKEISIYPTIDPSELLNTNFVGEFLILDITNNHNRIIVSLKRLESIYLWNRLRQIDFTNMTIYAKIEKPLGKGKLVIFNGLNFFVLNSNIPKYYLRTNNKNLFMPFKFLEIKDYFHIAHVSSKLAIFSKVNKNLSIGTIYIGNITSIKDFGIFINVLGIKCFLHSSEIPQKQSKTTNLASLYKLGDQILIKIIYKDTERGRISLTLES 265
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1153.1 vs. uniprot
Match: A0A5B9RE09_9PHAE (30S ribosomal protein S1 n=2 Tax=Laminariales TaxID=2886 RepID=A0A5B9RE09_9PHAE) HSP 1 Score: 386 bits (992), Expect = 1.850e-133 Identity = 189/265 (71.32%), Postives = 227/265 (85.66%), Query Frame = 1
Query: 1 MLLSIATSKFDFNKFGLILSQYSYKVKTNDILAGMVIGVESNYVLVDLGLEQVCFLPLKEISRFPIYNPTELLNINYVGEFLILDIKKKSNRIIISMKRVQSIYLWNRLRQIDFKNITIYAKLEESLMKGKLILFNGLFFFALNINIPKYYLRTNNKNLFMPFKFLEVKDSFHIAQMSSKLAIFSKINKNLVIGPIYLANVTAIKYFGVFVNILGVNCLLHISEIFKKTTQTENLSSLYKLGDQIKLKIISKDIERGRVSVALQN 795
M + TSK DFNKFGLILS+YSY++K NDILAG++IG+ESNY LVDLGLEQ+CFLPLKEIS +P +P ELLN N+VGEFLI DI S+RII+S+KR++SIYLWNRLRQIDF N+TIYAK+++SL KGKL++FNGL FF LN NIPKYYLRTNNKNLFMPFKFLEVKD FHIA +SS+LAIFSK+NKNL IG IYL N+T+I+ FG+F+N+LG+ C LHISEI +K +T NL SLYKLGDQI +KII KD ERGR+SV L++
Sbjct: 1 MSIPTVTSKLDFNKFGLILSKYSYQIKKNDILAGIIIGIESNYALVDLGLEQICFLPLKEISIYPTMDPRELLNTNFVGEFLIFDIINNSSRIIVSLKRLESIYLWNRLRQIDFTNMTIYAKIQKSLGKGKLVIFNGLRFFVLNSNIPKYYLRTNNKNLFMPFKFLEVKDYFHIAHVSSRLAIFSKVNKNLSIGKIYLGNITSIRGFGIFINVLGIKCFLHISEISQKHNKTPNLGSLYKLGDQIPIKIIYKDTERGRISVTLES 265
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1153.1 vs. uniprot
Match: A0A8F0FAQ9_9PHAE (Ribosomal protein S1 n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0FAQ9_9PHAE) HSP 1 Score: 380 bits (976), Expect = 5.040e-131 Identity = 187/264 (70.83%), Postives = 225/264 (85.23%), Query Frame = 1
Query: 1 MLLSIATSKFDFNKFGLILSQYSYKVKTNDILAGMVIGVESNYVLVDLGLEQVCFLPLKEISRFPIYNPTELLNINYVGEFLILDIKKKSNRIIISMKRVQSIYLWNRLRQIDFKNITIYAKLEESLMKGKLILFNGLFFFALNINIPKYYLRTNNKNLFMPFKFLEVKDSFHIAQMSSKLAIFSKINKNLVIGPIYLANVTAIKYFGVFVNILGVNCLLHISEIFKKTTQTENLSSLYKLGDQIKLKIISKDIERGRVSVALQ 792
M L TSKFDFNKFGLILS+YSY++K NDILAG++IG+ESNY LVDLGLEQ+CFLPLKEIS +P+ N ELLN N+VGEFLILDI +RII+S+KR++SIYLWNRLRQ+DF N+TIYAK+E+ L KGKL++FNGL FF LN+NIPKYYLRTN KNLFMPFKFLEVKD FHIAQ+SS+LAIF+K+NKNL I IY+ N+T+IK FG+F+N+LG+ CLLHISEI + + NL SLYKLGDQI +KII KD ERGR+SV L+
Sbjct: 1 MPLPTVTSKFDFNKFGLILSKYSYQIKKNDILAGIIIGLESNYALVDLGLEQICFLPLKEISIYPLVNTRELLNTNFVGEFLILDITNNHSRIIVSLKRLESIYLWNRLRQLDFTNMTIYAKIEKPLGKGKLVIFNGLKFFVLNLNIPKYYLRTNKKNLFMPFKFLEVKDYFHIAQVSSRLAIFTKVNKNLSIRKIYIGNITSIKDFGIFINVLGIKCLLHISEISQNHNKIPNLVSLYKLGDQIPIKIIYKDTERGRISVTLK 264
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1153.1 vs. uniprot
Match: A0A8F0F7Y6_9PHAE (Ribosomal protein S1 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7Y6_9PHAE) HSP 1 Score: 372 bits (954), Expect = 1.050e-127 Identity = 185/263 (70.34%), Postives = 224/263 (85.17%), Query Frame = 1
Query: 1 MLLSIATSKFDFNKFGLILSQYSYKVKTNDILAGMVIGVESNYVLVDLGLEQVCFLPLKEISRFPIYNPTELLNINYVGEFLILDIKKKSNRIIISMKRVQSIYLWNRLRQIDFKNITIYAKLEESLMKGKLILFNGLFFFALNINIPKYYLRTNNKNLFMPFKFLEVKDSFHIAQMSSKLAIFSKINKNLVIGPIYLANVTAIKYFGVFVNILGVNCLLHISEIFKKTTQTENLSSLYKLGDQIKLKIISKDIERGRVSVAL 789
MLLSI TSKFDFNKFGLILS+YSY++K NDILAG++IG+ESNY LVDLGL+Q+CFLP++E++ + +P +LLNIN++GEFLIL+I K +RII+S+KR++SIYLWNRLRQ+DF NITIYAK+E+SL KGKLI FNGL FF LN NIPKYYLR NNKNLFMPFKFLEVKDSFHIA +SKLAIFSK+++NL IG YL +T+IK FG+FVNI G+ CLLHISEI +K ++ L S Y+LGDQI LKII KD ERGR+SV L
Sbjct: 1 MLLSIVTSKFDFNKFGLILSKYSYQIKKNDILAGIIIGIESNYALVDLGLDQICFLPIEELAIYLTVDPHKLLNINFIGEFLILNITKNQSRIILSLKRIESIYLWNRLRQLDFTNITIYAKIEKSLGKGKLINFNGLVFFVLNSNIPKYYLRGNNKNLFMPFKFLEVKDSFHIAHTNSKLAIFSKVSRNLAIGSNYLGTITSIKDFGIFVNITGIKCLLHISEISQKQSKKPKLISSYRLGDQIWLKIIYKDTERGRISVTL 263
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1153.1 vs. uniprot
Match: A0A8F0F8H5_MACPY (Ribosomal protein S1 n=13 Tax=Laminariales TaxID=2886 RepID=A0A8F0F8H5_MACPY) HSP 1 Score: 371 bits (952), Expect = 2.430e-127 Identity = 184/266 (69.17%), Postives = 222/266 (83.46%), Query Frame = 1
Query: 1 MLLSIATSKFDFNKFGLILSQYSYKVKTNDILAGMVIGVESNYVLVDLGLEQVCFLPLKEISRFPIYNPTELLNINYVGEFLILDIKKKSNRIIISMKRVQSIYLWNRLRQIDFKNITIYAKLEESLMKGKLILFNGLFFFALNINIPKYYLRTNNKNLFMPFKFLEVKDSFHIAQMSSKLAIFSKINKNLVIGPIYLANVTAIKYFGVFVNILGVNCLLHISEIFKKTTQTENLSSLYK--LGDQIKLKIISKDIERGRVSVALQ 792
M L+ TSKFDFNKFGLILS+YSY++K NDILAG++IG+ESNY LVDLGLEQ+CFLP+KEIS +P +P ELLN N+V EFLILDI +RII+S+KR++SIYLWNRLRQIDF N+TIYAK+E+ L KGKL++FNGL FF LN NIPKYYLRT NKNLFMPFKFLEVKD FHIA +SS+LAIFSK+NKNL + Y N+TAI+ FG+F+N+LG+ C LHISEIF+ + N+SSLYK LGDQI +KII KD ERGR+SV L+
Sbjct: 1 MPLTTVTSKFDFNKFGLILSKYSYQIKKNDILAGIIIGIESNYALVDLGLEQICFLPIKEISIYPTIDPRELLNSNFVSEFLILDITNDHSRIIVSLKRLESIYLWNRLRQIDFPNMTIYAKIEKPLGKGKLVIFNGLRFFVLNANIPKYYLRTKNKNLFMPFKFLEVKDYFHIAHVSSRLAIFSKVNKNLSLRETYRGNITAIRDFGIFINVLGIKCFLHISEIFQNHNKITNISSLYKYKLGDQISIKIIYKDTERGRISVTLK 266
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1153.1 vs. uniprot
Match: A0A8F0F9U3_9PHAE (Ribosomal protein S1 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9U3_9PHAE) HSP 1 Score: 362 bits (930), Expect = 5.400e-124 Identity = 179/263 (68.06%), Postives = 216/263 (82.13%), Query Frame = 1
Query: 1 MLLSIATSKFDFNKFGLILSQYSYKVKTNDILAGMVIGVESNYVLVDLGLEQVCFLPLKEISRFPIYNPTELLNINYVGEFLILDIKKKSNRIIISMKRVQSIYLWNRLRQIDFKNITIYAKLEESLMKGKLILFNGLFFFALNINIPKYYLRTNNKNLFMPFKFLEVKDSFHIAQMSSKLAIFSKINKNLVIGPIYLANVTAIKYFGVFVNILGVNCLLHISEIFKKTTQTENLSSLYKLGDQIKLKIISKDIERGRVSVAL 789
M LSI S FDFNKFGL+LS+YSY+ K NDILAG+VIG+ESNY LVD GLEQ+CFLPLKEIS P + E LNIN++GEF ILDI + NRIIIS++R++SIYLWNRLRQIDF NITIYAK+E+S+ KGKL +FNGL F LN NIPKYYLR + KN+FMPFKFLEVKD +H+A +SSKLAIFSK+N NL IG IY N+ +I+ FGVF+NILG+ CLLHISEI +K + NL+ LYK+GDQ+KLK+I KD +RGR+SV L
Sbjct: 1 MPLSIVPSTFDFNKFGLLLSKYSYQAKKNDILAGIVIGIESNYALVDFGLEQICFLPLKEISICPTLDLREFLNINFIGEFSILDITNRQNRIIISLRRIESIYLWNRLRQIDFSNITIYAKIEKSIGKGKLTIFNGLLLFVLNSNIPKYYLRIDRKNIFMPFKFLEVKDYYHVAHISSKLAIFSKVNNNLTIGLIYSGNIVSIRDFGVFINILGIKCLLHISEISQKQKKVTNLNLLYKVGDQLKLKVIYKDTKRGRISVTL 263 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11797.1153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig11797.1153.1 >prot_E-siliculosus-1a_F_contig11797.1153.1 ID=prot_E-siliculosus-1a_F_contig11797.1153.1|Name=mRNA_E-siliculosus-1a_F_contig11797.1153.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=266bp MLLSIATSKFDFNKFGLILSQYSYKVKTNDILAGMVIGVESNYVLVDLGLback to top mRNA from alignment at E-siliculosus-1a_F_contig11797:666..1463+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig11797.1153.1 ID=mRNA_E-siliculosus-1a_F_contig11797.1153.1|Name=mRNA_E-siliculosus-1a_F_contig11797.1153.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=798bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11797:666..1463+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11797:666..1463+ >mRNA_E-siliculosus-1a_F_contig11797.1153.1 ID=mRNA_E-siliculosus-1a_F_contig11797.1153.1|Name=mRNA_E-siliculosus-1a_F_contig11797.1153.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1596bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11797:666..1463+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |