mRNA_E-siliculosus-1a_F_contig1179.1150.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1179.1150.1 vs. uniprot
Match: A0A6H5L8H1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8H1_9PHAE) HSP 1 Score: 629 bits (1623), Expect = 1.700e-209 Identity = 523/642 (81.46%), Postives = 530/642 (82.55%), Query Frame = 2
Query: 35 MYTAPPNHLLQTPMAPPGGHSKRIPPPWPAAGCPAALVSKATALLLLICTLDSASGFAPHTFSSSARQQLRRYRPSCDPSFGRRRGGAPVSAGPSXXXXXXXXXXXXXXXXXXXXVKFAGGRVTRPVQQXXXXXXXXXXXDVRKKSARWGVKPPSPPKLPSIPDVRSLKNPLDGVGKSLRKVGSGVAAVKDAVYGAADAAGSVXXXXXXXXXXXXAGKAPGDGGAMPQLAATASVTPVAPSNAPGGAKRGLRLLVGGVVAAKDAFWGSLDALGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGTVEGVDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAQKKVDGVLASVASTQASAESFVSGVKGGVDTVSSLAQRASAVATGKERXXXXXXXXXXAEARRKEKIKNALVTFGGEPYTAKDIAFATLKALGATAQGAVVVGKGLFGFAKEAKSIPVEVARTLLGPLYKYQQSQKRVQDAVDLQRMASAPTARVDDAPSSAAGGAATKELPGGGKDAGEEP 1960
MYTAPPN LLQTPMAPPGGHSKRIPPPWPA GCP LVSKATALLLLICTLDS SGFAPHTFSSSARQQLRRYRPSCDPSFGRRRG AP+SAGPS VKFAGGRVTRPV+Q DVRKKSARWGVKPPSPPKLPSIPDVRSLKNPLDGVGKSLRKVGSGVAAVKDA YGAADAAGS+ AGKA GDGGAMPQLAATASVTPV PSNAPGGAKR LRLLVGG VAAKDAFWGSLD L XXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXX WGTVEGVDH XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AQKKVDGVLASV STQASAESFVSGVKGGVDTVSSLAQRA+AVATGKE XXXXXXXXXXAEARRKEK+KNALVTFGGEPYTAKDIAFATLKALGATAQGAVVVGKGLFGFA+EA+SIPVEVARTLLGPLYKYQQSQKRVQDAVDLQR ASAPTARVDDAPSSAAGGAATKELPGGGK AGEEP
Sbjct: 1 MYTAPPNRLLQTPMAPPGGHSKRIPPPWPAVGCPTTLVSKATALLLLICTLDSGSGFAPHTFSSSARQQLRRYRPSCDPSFGRRRGVAPLSAGPSSSSPTPPKRSSAKKKGTNS-VKFAGGRVTRPVEQPEGDNKDDEEEDVRKKSARWGVKPPSPPKLPSIPDVRSLKNPLDGVGKSLRKVGSGVAAVKDAAYGAADAAGSIAEQVQGVADAAAAGKAAGDGGAMPQLAATASVTPVVPSNAPGGAKRALRLLVGGAVAAKDAFWGSLDTLSSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAKENAQAVARAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMAEKRRRQQEERLXXXXXXXXXXXXXXXXXXXXVESAKAVVWGTVEGVDHLVDAVASTPAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQKKVDGVLASVTSTQASAESFVSGVKGGVDTVSSLAQRAAAVATGKEXXXXXXXXXXXAEARRKEKMKNALVTFGGEPYTAKDIAFATLKALGATAQGAVVVGKGLFGFAREARSIPVEVARTLLGPLYKYQQSQKRVQDAVDLQRTASAPTARVDDAPSSAAGGAATKELPGGGKYAGEEP 641
BLAST of mRNA_E-siliculosus-1a_F_contig1179.1150.1 vs. uniprot
Match: D7G6H7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6H7_ECTSI) HSP 1 Score: 448 bits (1152), Expect = 1.430e-142 Identity = 454/527 (86.15%), Postives = 457/527 (86.72%), Query Frame = 2
Query: 74 MAPPGGHSKRIPPPWPAAGCPAALVSKATALLLLICTLDSASGFAPHTFSSSARQQLRRYRPSCDPSFGRRRGGAPVSAGPSXXXXXXXXXXXXXXXXXXXXVKFAGGRVTRPVQQXXXXXXXXXXXDVRKKSARWGVKPPSPPKLPSIPDVRSLKNPLDGVGKSLRKVGSGVAAVKDAVYGAADAAGSVXXXXXXXXXXXXAGKAPGDGGAMPQLAATASVTPVAPSNAPGGAKRGLRLLVGGVVAAKDAFWGSLDALGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGTVEGVDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAQKKVDGVLASVASTQASAESFVSGVKGGVDTVSSLAQRASAVATGKERXXXXXXXXXXAEARRKEKIKNALVTFGGEPYT 1654
MAPPGGHSKRIPPPWPAAGCP ALVSKATALLLLICTLDSASGFA HTFSSSARQQLRRYRPSCDPSFGRRRGGAP+S PS VKFAGGRVTRPVQQ DVRKKSARWGVKPPSPPKLPSIPDVRSLKNPLDGVGKSLRKVGSGVAAVKDAVYGAADAAGSV AGKAPGDGGAMPQLAATASVTPVAPSNAPGGAKR LRLLVGG VAAKDAFWGSLDALGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGTVEGVDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AQKKVDGVLASVASTQASAESFVSGVKGGVDTVSSLAQRASAVATGKE+XXXXXXXXXXAEARRKEK+KNALVTFGGEPYT
Sbjct: 1 MAPPGGHSKRIPPPWPAAGCPTALVSKATALLLLICTLDSASGFAGHTFSSSARQQLRRYRPSCDPSFGRRRGGAPLSEAPSSSSPTPPKRPSASKKKGTSAVKFAGGRVTRPVQQPEGNKDDEEE-DVRKKSARWGVKPPSPPKLPSIPDVRSLKNPLDGVGKSLRKVGSGVAAVKDAVYGAADAAGSVAEQVQGVADAAAAGKAPGDGGAMPQLAATASVTPVAPSNAPGGAKRALRLLVGGAVAAKDAFWGSLDALGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAHAVXXXXXXXXXXXXXXXXXXXXXXXXXKEGVYGAVDAVSRLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGTVEGVDHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQKKVDGVLASVASTQASAESFVSGVKGGVDTVSSLAQRASAVATGKEKXXXXXXXXXXAEARRKEKMKNALVTFGGEPYT 526
BLAST of mRNA_E-siliculosus-1a_F_contig1179.1150.1 vs. uniprot
Match: D7G6H8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6H8_ECTSI) HSP 1 Score: 235 bits (600), Expect = 2.420e-67 Identity = 166/226 (73.45%), Postives = 169/226 (74.78%), Query Frame = 2
Query: 1649 YTAKDIAFATLKALGATAQGAVVVGKGLFGFAKEAKSIPVEVARTLLGPLYKYQQSQKRVQDAVDLQRMASAPTARVDDAPSSAAGGAATKELPGGGKDAGEEPSPKSSAAPEVTVVTPTXXXXSKLTAATPAEATTGVPSKAPGSEKKKDSSTPKPVAKPAEARAXXXXXXXXXXXXXXXPETAXXXXXXXXXXXXXXXVEAEERAAELEFMKEMKAEADKNAPP 2326
Y+AKDIAFATLKALGATAQGAVVVGKGLFGFAKEAKSIPVEVARTLLGPLYKYQQSQKRVQDAVDLQRMASAPTARVD APSS GG A K+LPG PEVTVV XXXX AEATT VPSKAPGSEKKKD+STPKPVAKPAEAR XXXXXXXXXXXX VEAEERAAELEFMKEMKAEADKN PP
Sbjct: 2 YSAKDIAFATLKALGATAQGAVVVGKGLFGFAKEAKSIPVEVARTLLGPLYKYQQSQKRVQDAVDLQRMASAPTARVDVAPSSGGGGGAAKDLPGXXXXXXXXXXXXXXXXPEVTVVXXXXXXXXXXXXXXXAEATTAVPSKAPGSEKKKDASTPKPVAKPAEARGATTXXXXXXXXXXXXXXXXPAEKKEGTRNKKKKDVEAEERAAELEFMKEMKAEADKNTPP 227 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1179.1150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1179.1150.1 >prot_E-siliculosus-1a_F_contig1179.1150.1 ID=prot_E-siliculosus-1a_F_contig1179.1150.1|Name=mRNA_E-siliculosus-1a_F_contig1179.1150.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=765bp MYTAPPNHLLQTPMAPPGGHSKRIPPPWPAAGCPAALVSKATALLLLICTback to top mRNA from alignment at E-siliculosus-1a_F_contig1179:23851..33182+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1179.1150.1 ID=mRNA_E-siliculosus-1a_F_contig1179.1150.1|Name=mRNA_E-siliculosus-1a_F_contig1179.1150.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=9332bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1179:23851..33182+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1179:23851..33182+ >mRNA_E-siliculosus-1a_F_contig1179.1150.1 ID=mRNA_E-siliculosus-1a_F_contig1179.1150.1|Name=mRNA_E-siliculosus-1a_F_contig1179.1150.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=4590bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1179:23851..33182+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |