mRNA_E-siliculosus-1a_F_contig1176.1137.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1176.1137.1
Unique NamemRNA_E-siliculosus-1a_F_contig1176.1137.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1176.1137.1 vs. uniprot
Match: A0A6H5K0Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Y1_9PHAE)

HSP 1 Score: 887 bits (2293), Expect = 0.000e+0
Identity = 469/508 (92.32%), Postives = 478/508 (94.09%), Query Frame = 1
Query:    1 GPFSYEHRETAPPWSVGWLPTSPTMAEQHTDDAFSRPRELLLGDHAHTDQQKKKLFVGMAPKSAYEEDYRAVFEPFGTPIDIYVIRDRNGFSKGCAFVRYESVKSASDAIEALHDKHIMPGGFRTLVVTVADDRRGPQTSAVGTTTTRRDAVGSGDGLFRSLSRPSSFMGSDSGGGGSIPSLGNVVGQNRSTVTAPQAGATAFAPTVAPGSGXXXXQLSGMPYFLCGGNPPQGTYVYYPYVPSSSVQHDTGSSAAPVGIGAKPHHAFSVGSPAVGNNDRCELGARGAQEDGYTGDRTVRKFGTGGPEERGRRWAKQSVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTGESKGFGFVSYSKPDEAEAAISSMNGFFIGQKRLKVVRKRGQQTDRCLDSSSXXXXXXXXXXXXXXXXXXXXIGRPSDPGYAAGDGSCGLARPDSGASGNAGTNVVVGSGMNNGNGDGTSHRSILGSGSQADLEFFTPEGLLGPSMTR 1524
            GPFS+EHRETAP WSVGWLPTSPTMAEQH DDAFSRPRE+LLGDHAHTDQQKKKLFVGMAPKSAYEEDYRAVFEPFGTPIDIYVIRDRNGFSKGCAFVRYESV+SASDAIEALHDK+IMPGGFRTLVVTVADDRRGPQTSAVGTTTTRRDAVGSGD L RSLSRPSSFMGSDS  GGSIPS GN+VGQNRSTV APQAGATA APT+APGS      LSGMPYFLCGGNPPQGTYVYYPYVPSSSVQHDTG S APVGIGAKPHHAFSVGSPAVGNNDRCELGARGAQEDGYTGDRTVRKFGTGGPEERGRRWAKQSVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTGESKGFGFVSYSKPDEAEAAISSMNGFFIGQKRLKVVRKRGQQTDRCLDSS XXXXXXXXXXXXXXX      GRP DPGYAA DGSCGLARPD GASG AG+NVVVGSG+NNGNGDGTSHRSI GSGSQADL+F TPEGLLGPSMTR
Sbjct:   10 GPFSFEHRETAPTWSVGWLPTSPTMAEQHNDDAFSRPREMLLGDHAHTDQQKKKLFVGMAPKSAYEEDYRAVFEPFGTPIDIYVIRDRNGFSKGCAFVRYESVRSASDAIEALHDKYIMPGGFRTLVVTVADDRRGPQTSAVGTTTTRRDAVGSGDVLLRSLSRPSSFMGSDSSVGGSIPSFGNLVGQNRSTVAAPQAGATAVAPTIAPGSRPSSGLLSGMPYFLCGGNPPQGTYVYYPYVPSSSVQHDTGLSVAPVGIGAKPHHAFSVGSPAVGNNDRCELGARGAQEDGYTGDRTVRKFGTGGPEERGRRWAKQSVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTGESKGFGFVSYSKPDEAEAAISSMNGFFIGQKRLKVVRKRGQQTDRCLDSSXXXXXXXXXXXXXXXXS-----GRPRDPGYAASDGSCGLARPDRGASGIAGSNVVVGSGVNNGNGDGTSHRSIFGSGSQADLDF-TPEGLLGPSMTR 511          
BLAST of mRNA_E-siliculosus-1a_F_contig1176.1137.1 vs. uniprot
Match: D7FV61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV61_ECTSI)

HSP 1 Score: 777 bits (2006), Expect = 1.360e-281
Identity = 385/394 (97.72%), Postives = 387/394 (98.22%), Query Frame = 1
Query:    1 GPFSYEHRETAPPWSVGWLPTSPTMAEQHTDDAFSRPRELLLGDHAHTDQQKKKLFVGMAPKSAYEEDYRAVFEPFGTPIDIYVIRDRNGFSKGCAFVRYESVKSASDAIEALHDKHIMPGGFRTLVVTVADDRRGPQTSAVGTTTTRRDAVGSGDGLFRSLSRPSSFMGSDSGGGGSIPSLGNVVGQNRSTVTAPQAGATAFAPTVAPGSGXXXXQLSGMPYFLCGGNPPQGTYVYYPYVPSSSVQHDTGSSAAPVGIGAKPHHAFSVGSPAVGNNDRCELGARGAQEDGYTGDRTVRKFGTGGPEERGRRWAKQSVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTGESKGFGFVSYSKPDEAEAAISSMNGFFIGQKRL 1182
            GPFSYEHRETAPPWSVGWLPTSPTMAEQHTDDAFSRPRELLLGDHAHTDQQKKKLFVGMAPKSAYEEDYRAVFEPFGTPIDIYVIRDRNGFSKGCAFVRYESVKSASDAIEALHDKHIMPGGFRTLVVTVADDRRGPQTSAVGTTTTRRDAVGSGDGLFR+LSRPSSFMGSDSGGGG+IPSLGNVVGQNRSTVTAPQAGATAFAPTVAPGSG     LSGMPYFLCGGNPPQGTYVYYPYVPSSSVQHDTGSSAAP GIGAKPHHAFSVGSPAVGNNDRCELGARGAQEDGYTGDRTVRKFGTGGPEERGRRWAKQSVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTGESKGFGFVSYSKPDEAEAAISSMNGFFIGQK L
Sbjct:    7 GPFSYEHRETAPPWSVGWLPTSPTMAEQHTDDAFSRPRELLLGDHAHTDQQKKKLFVGMAPKSAYEEDYRAVFEPFGTPIDIYVIRDRNGFSKGCAFVRYESVKSASDAIEALHDKHIMPGGFRTLVVTVADDRRGPQTSAVGTTTTRRDAVGSGDGLFRALSRPSSFMGSDSGGGGTIPSLGNVVGQNRSTVTAPQAGATAFAPTVAPGSGPSSGLLSGMPYFLCGGNPPQGTYVYYPYVPSSSVQHDTGSSAAPAGIGAKPHHAFSVGSPAVGNNDRCELGARGAQEDGYTGDRTVRKFGTGGPEERGRRWAKQSVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTGESKGFGFVSYSKPDEAEAAISSMNGFFIGQKFL 400          
BLAST of mRNA_E-siliculosus-1a_F_contig1176.1137.1 vs. uniprot
Match: D7FV60_ECTSI (Trinucleotide repeat containing 4, isoform CRA_d n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV60_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 1.540e-65
Identity = 157/363 (43.25%), Postives = 192/363 (52.89%), Query Frame = 1
Query:  148 QQKKKLFVGMAPKSAYEEDYRAVFEPFGTPIDIYVIRDRNGFSKGCAFVRYESVKSASDAIEALHDKHIMPGGFRTLVVTVADDRRGPQTSAVGTTTTRRDAVGSGDGLFRSLSRPSSFMGSDSGGGGSIPSLGNVVGQNRSTVTAPQAGATAFAPTVAPGSGXXXXQLSGMPYFLCGGN------PPQGTYVYYPYVPSSSVQHDTGSSAAPVGIGAKPHHAFSVGSPAVGNNDRCELGARGAQEDGYTGDRTVRKFGTGGPEERGRRWAKQSVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTGESKGFGFVSYSKPDEAEAAISSMNGFFIGQKRLKVVRKR-GQQTD 1215
            +Q+ KLFVGMAPKSA E++ RAVF P+GT  +I+VIR+++G +KGCAFV+Y + +SA DAIEALH+++ M GG R LVV  AD++RG Q +A           G   GL  S  R  S    ++GG    P  G               G  A  P   PG       +SGMPY +  G       P QG+YVYYPY          G+   P   G    +     SP+ G                                       + + GP GANLF+Y+LP  L+DADLATAFAPFG VLSAKVY DR +GESKGFGFVSYS P  AEAAI+ MNGF IG KRLKV  KR GQ TD
Sbjct:  128 EQENKLFVGMAPKSANEDEIRAVFAPYGTLREIHVIRNQDGTNKGCAFVKYTTRQSALDAIEALHEQYTMQGGPRPLVVKFADNKRGTQAAA-----------GRLGGLIGSPGRHGSGPHPEAGGWMGHPGAG---------------GQGAGYPYPMPGPPMSPHMMSGMPYGMAYGGGQAPGAPAQGSYVYYPY----------GAPGYPPQPGGPGQYHSGPPSPSRGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXTRPAEGPPGANLFIYHLPQDLSDADLATAFAPFGHVLSAKVYIDRASGESKGFGFVSYSLPSHAEAAIAQMNGFQIGSKRLKVQHKRRGQSTD 453          
BLAST of mRNA_E-siliculosus-1a_F_contig1176.1137.1 vs. uniprot
Match: D0NNK0_PHYIT (CUG-BP-and ETR-3-like factor, putative n=17 Tax=Phytophthora TaxID=4783 RepID=D0NNK0_PHYIT)

HSP 1 Score: 181 bits (459), Expect = 1.880e-47
Identity = 145/364 (39.84%), Postives = 184/364 (50.55%), Query Frame = 1
Query:  151 QKKKLFVGMAPKSAYEEDYRAVFEPFGTPIDIYVIRD-RNGFSKGCAFVRYESVKSASDAIEALHDKHIMPGGFRTLVVTVADDRRGPQTSAVGTTTTRRDAVGSGDGLFRSLSRPSS-FMGSDSGGGGSIPSLGNVVGQNRSTVTAPQAGATA-FAPTVAPGSGXXXXQLSGMPYFLCGGNPPQGTYVYYPYVPSSSVQHDTGSSAAPVGIGAKPHHAFSVGSPAVGNNDRCELGARGAQEDGYTGDRTVRKFGTGGPEERGRRWAKQSVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTGESKGFGFVSYSKPDEAEAAISSMNGFFIGQKRLKVVRKRGQQTDRCLDSS 1233
            Q+ KLF+GM PK+A E   R VFE FG+  ++Y++R    G SKGCAF++++   SA  AIE ++    M  G   LVV  AD RR     A                  R+L+  ++ +     G G + P L  +  Q    + A  A A A  +PTVA G G      +  P     G+P      Y PY  ++         AAP G G  P+ A      A G + +  LGA            ++   G G    +  R   Q  GPTGANLF+Y+LP  LTDADLATAFAPFG V+SAKVY D+ TGESKGFGFVSY   D A+AAI+SMNGF IG KRLKV  KR  Q    L  S
Sbjct:  119 QEHKLFIGMIPKTADEAAIRDVFELFGSIEEVYILRHPATGQSKGCAFLKFKERSSALAAIEEVNGIVTMDRGTSPLVVKFADSRRQRLQRA------------------RNLAAATNAYWPLPPGAGLAFPQLQQLQQQYMQQMQAFGAQAAAGMSPTVA-GLGSPVGATASGP-----GSPTNSFMYYNPYGFAAGA-------AAPYGFGGMPNVA------AAGFDMQTGLGA------------SLDLQGQGAEAAKASRTTSQLEGPTGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKITGESKGFGFVSYDSADAADAAIASMNGFQIGTKRLKVQHKRIHQRSDYLGGS 433          
BLAST of mRNA_E-siliculosus-1a_F_contig1176.1137.1 vs. uniprot
Match: A0A7S4QD22_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QD22_9STRA)

HSP 1 Score: 181 bits (460), Expect = 2.300e-46
Identity = 144/368 (39.13%), Postives = 179/368 (48.64%), Query Frame = 1
Query:  160 KLFVGMAPKSAYEEDYRAVFEPFGTPIDIYVIRDRNGFSKGCAFVRYESVKSASDAIEALHDKHIMPGGFRTLVVTVADDRRGPQTSAVGTTTTRRDAVGSGDGLFRSLSRPSSFMGSDSGGGGSIPSL-GNVVGQNRSTVTAPQAGATAFAPTVAPGSGXXXXQLSGMPYFLCGGNPPQ---GTYVYYPYVPSSS-----------VQHDTGSSAAPVGIGAKPHHAFSVGS--PAVGNNDRCELGARGAQEDGYTGDRTVRKFGTGGPEERGRRWAKQSVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTGESKGFGFVSYSKPDEAEAAISSMNGFFIGQKRLKVVRKRGQQT 1212
            KLFVGM P+   E+D R +F PFG    IY+IR+ +G  KGCAFV++   +SA  AI  LH ++ M G  R+LVV  AD  +G + ++      RR+A    + +      P S     SG GG  P + G   G   +    PQAG  A               +SG   +  G  PPQ   G Y +  + P SS                  +AAP G+       FS G   P   + ++     RG   DG     T  +     P E          GP GANLF+Y+LP  LTDADLATAF PFG V+SAKVY DR TGESKGFGFVSY     AE AI  MNGF IG KRLKV  KR  +T
Sbjct:  281 KLFVGMLPRKTTEKDLREIFSPFGDISAIYLIRNDDGTQKGCAFVKFHQRESAQAAINTLHGQYCMEGMRRSLVVKYAD--KGYRRASRRYQAARREAYE--NAVMHGHPNPGSVFYVPSGPGGPPPQMPGFPPGGPMAYPQPPQAGPHAEGTQGPSPPMGISPPVSGTGQYSVG-QPPQYATGAYPHGSHTPPSSQXXXXXXXXXXXXXXXXXAAAPYGM----PQGFSGGQAGPGGAHQNKPRFYGRGQNRDGQLPHATTPR-----PRE----------GPAGANLFIYHLPHDLTDADLATAFNPFGNVISAKVYVDRYTGESKGFGFVSYDSVISAEHAIEQMNGFQIGTKRLKVQHKRVTKT 624          
BLAST of mRNA_E-siliculosus-1a_F_contig1176.1137.1 vs. uniprot
Match: A0A1W0A7F0_9STRA (CUG-BP-and ETR-3-like factor n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A7F0_9STRA)

HSP 1 Score: 174 bits (441), Expect = 2.030e-45
Identity = 144/390 (36.92%), Postives = 184/390 (47.18%), Query Frame = 1
Query:   70 TMAEQHTDDAFSRPRELLLGDHAHTDQQKKKLFVGMAPKSAYEEDYRAVFEPFGTPIDIYVIRD-RNGFSKGCAFVRYESVKSASDAIEALHDKHIMPGGFRTLVVTVADDRRGPQTSAVGTTTTRRDAVGSGDGLFRSLSRPSSFMGSDSGGGGSIPSLGNVVGQNRSTVTAPQAGATAFAPTVAPGSGXXXXQLSGMPYFLCGGNPPQGTYVYY-PYVPSSSVQHDTGSSAAPVGIGAKPHHAFSVGSPAVGNNDRCELGARGAQEDGYTGDRTVRKFGTGGPEERGRRWAKQSVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTGESKGFGFVSYSKPDEAEAAISSMNGFFIGQKRLKVVRKRGQQTDRCLDSS 1233
            T+  Q T    S P ++   +      Q+ KLF+GM PK A E   R VF P G   +IY++R    G SKGCAF++Y+   SAS AIEA +  + M  G   LVV  AD RR     A       R+   +    +  L             GG+IP       Q +        GA A     +PG         G P  +   NP   T++YY PY  +++    +G ++ P   G  P     + +P  G      +G  GA                        R A Q  GP GANLF+Y+LP  LTDADLATAFAPFG V+SAKV+ D++TGESKGFGFVSY     A+AAI+SMNGF IG KRLKV  KR    D   D S
Sbjct:   96 TLHNQVTLPMSSNPLQVRPAEGQAGASQEHKLFIGMIPKHADEASIREVFAPHGAIEEIYILRHPATGQSKGCAFLKYKDRHSASSAIEAFNGIYTMDRGTAPLVVKFADSRRQRIQRA-------RNQAATAAAAYWQLPP-----------GGTIPFPQIQQIQQQYMQQMQVFGAQALGGQTSPG---------GSP--IPATNP--ATFMYYNPYAFAAA----SGYNSFPPAGGPAPFPLDPLATPMPG------MGLSGA------------------------RAATQLEGPAGANLFIYHLPHDLTDADLATAFAPFGTVISAKVFMDKNTGESKGFGFVSYDSVQAADAAIASMNGFQIGSKRLKVQHKRVHNRDEYDDES 420          
BLAST of mRNA_E-siliculosus-1a_F_contig1176.1137.1 vs. uniprot
Match: A0A484EFV5_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EFV5_BRELC)

HSP 1 Score: 174 bits (442), Expect = 4.130e-45
Identity = 137/355 (38.59%), Postives = 174/355 (49.01%), Query Frame = 1
Query:  151 QKKKLFVGMAPKSAYEEDYRAVFEPFGTPIDIYVIRD-RNGFSKGCAFVRYESVKSASDAIEALHDKHIMPGGFRTLVVTVADDRRGPQTSAVGTTTTRRDAVGSGDGLFRSLSRPSSFMGSDSGGGGSIPSLGNVVGQNRSTVTAPQAGATAFAPTVAPGSGXXXXQLSGMPYFLCGGNPPQGTYVYY-PYVPSSSVQHDTGSSAAPVGIGAKPHHAFSVGSPAVGNNDRCELGARGAQEDGYTGDRTVRKFGTGGPEERGRRWAKQSVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTGESKGFGFVSYSKPDEAEAAISSMNGFFIGQKRLKVVRKRGQQ 1209
            Q+ KLF+GM PK+A E   R VFE FGT  ++Y++R    G SKGCAF++++   SA  AIE ++    M  G   LVV  AD RR     A      R  AV +           +S+     G G + P L  +  Q    + A  A A A       G G       G      G   P  +++YY PY  +++               A P+       P + + D    G  G +  G  GD             +  R   Q  GPTGANLF+Y+LP  LTDADLATAFAPFG V+SAKVY D+ TGESKGFGFVSY   + A+AAI+SMNGF IG KRLKV  KR  Q
Sbjct:  116 QEHKLFIGMIPKTADENAIREVFELFGTIDEVYILRHPATGQSKGCAFLKFKDRTSALAAIEEVNGNVTMDRGTSPLVVKFADSRRQRLQRA------RNMAVAT-----------NSYWPLHPGAGLAFPQLQQLQQQYMQQMQAFGAQAAAGLNPAIAGLGSPMGGTVG------GAGSPTNSFMYYNPYGFAANA--------------ANPYGFMPAVGPTMESFDMQASGT-GLELQGSGGDAAA----------KASRATSQLEGPTGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKITGESKGFGFVSYDSAEAADAAIASMNGFQIGSKRLKVQHKRIHQ 422          
BLAST of mRNA_E-siliculosus-1a_F_contig1176.1137.1 vs. uniprot
Match: A0A3M6V9P8_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V9P8_9STRA)

HSP 1 Score: 171 bits (434), Expect = 3.360e-44
Identity = 138/365 (37.81%), Postives = 177/365 (48.49%), Query Frame = 1
Query:  151 QKKKLFVGMAPKSAYEEDYRAVFEPFGTPIDIYVIRD-RNGFSKGCAFVRYESVKSASDAIEALHDKHIMPGGFRTLVVTVADDRRGPQTSAVGTTTTRRDAVGSGDGLFRSLSRPSS-FMGSDSGGGGSIPSLGNVVGQNRSTVTAPQAGATAFAPTVAPGSGXXXXQLSGMPYFLCGGNPPQGTYVYY-PYVPSSSVQHDTGSSAAPVGIGAKPHHAFSVGSPAVGNNDRCELGARGAQEDGYTGDRTVRKFGTGGPEERGRRWAKQSVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTGESKGFGFVSYSKPDEAEAAISSMNGFFIGQKRLKVVRKRGQQTDRCLDSSS 1236
            Q+ KLF+GM PK+A E   R VFE FG   ++Y++R    G SKGCAF++++   SA  AIE ++    M  G   LVV  AD RR     A                  R+L+  ++ +     G G + P L  +  Q    + A       F    A G       L+       G   P  +++YY PY         TG+ A P G G         G P VG     ++ + G        +++V        E +  R   Q  GPTGANLF+Y+LP  LTDADLATAFAPFG V+SAKVY D+ T ESKGFGFVSY   D A+AAI+SMNGF IG KRLKV  KR  Q    L   S
Sbjct:   77 QEHKLFIGMIPKTAEESAIREVFELFGNIEEVYILRHPATGQSKGCAFLKFKERSSALAAIEQVNGNVTMDRGTSPLVVKFADSRRQRLQRA------------------RNLAAAANAYWPLPPGAGMAFPQLQQLQQQYMQQMQA-------FGVQAAAGLNPAIAGLNSPVGSTGGMRSPTNSFMYYNPY------GFATGA-AGPYGFG---------GMPNVGGGAGLDMQSSGMVVGMDMPNQSV--------EAKASRTTSQLEGPTGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKITSESKGFGFVSYDSADAADAAIASMNGFQIGTKRLKVQHKRIHQRSDYLGGGS 392          
BLAST of mRNA_E-siliculosus-1a_F_contig1176.1137.1 vs. uniprot
Match: H3GY92_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GY92_PHYRM)

HSP 1 Score: 172 bits (436), Expect = 3.450e-44
Identity = 138/367 (37.60%), Postives = 177/367 (48.23%), Query Frame = 1
Query:  151 QKKKLFVGMAPKSAYEEDYRAVFEPFGTPIDIYVIRD-RNGFSKGCAFVRYESVKSASDAIEALHDKHIMPGGFRTLVVTVADDRRGPQTSAVGTTTTRRDAVGSGDGLFRSLSRPSS-FMGSDSGGGGSIPSLGNVVGQNRSTVTAPQAGATAFAPTVAPGSGXXXXQLSGMPYFLCGGNPPQGTYVYYPYVPSSSVQHDTGSSAAPVGIGAKPH---HAFSVGSPAVGNNDRCELGARGAQEDGYTGDRTVRKFGTGGPEERGRRWAKQSVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTGESKGFGFVSYSKPDEAEAAISSMNGFFIGQKRLKVVRKRGQQTDRCLDSSS 1236
            Q+ KLF+GM PK+A E   R VFE FG   ++Y++R    G SKGCAF++++   SA  AIE ++    M  G   LVV  AD RR     A                  R+L+  ++ +     G G + P L ++  Q    + A  A A A       G G      +G P     G+P      Y PY  + +       +AAP      P+     F + S  +G     + G   A                     +  R   Q  GPTGANLF+Y+LP  LTDADLATAFAPFG V+SAKVY D+ TGESKGFGFVSY   D A+AAI+SMNGF IG KRLKV  KR  Q +  L  SS
Sbjct:  116 QEHKLFIGMIPKTADEAAIRDVFELFGAIEEVYILRHPATGQSKGCAFLKFKERTSALAAIEDVNGNVTMDRGTSPLVVKFADSRRQRLQRA------------------RNLAAAANAYWPLPPGAGMAFPQLQHLQQQYMQQMQAFGAQAAAGLNPAVAGMGSPVGATAGSP-----GSPTNSFMYYNPYGFAGA------GAAAPXXXXXXPNVGGAGFDMQSSGLGAG--LDQGVEAAA--------------------KASRTTSQLEGPTGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKITGESKGFGFVSYDSADAADAAIASMNGFQIGTKRLKVQHKRIHQRNDYLGGSS 431          
BLAST of mRNA_E-siliculosus-1a_F_contig1176.1137.1 vs. uniprot
Match: A0A1V9ZMV5_9STRA (CUG-BP-and ETR-3-like factor n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZMV5_9STRA)

HSP 1 Score: 171 bits (434), Expect = 6.380e-44
Identity = 141/384 (36.72%), Postives = 178/384 (46.35%), Query Frame = 1
Query:   70 TMAEQHTDDAFSRPRELLLGDHAHTDQQKKKLFVGMAPKSAYEEDYRAVFEPFGTPIDIYVIRD-RNGFSKGCAFVRYESVKSASDAIEALHDKHIMPGGFRTLVVTVADDRRGPQTSAVGTTTTRRDAVGSGDGLFRSLSRPSSFMGSDSGGGGSIPSLGNVVGQNRSTVTAPQAGATAFAPTVAPGSGXXXXQLSGMPYFLCGGNPPQGTYVYYPYVPSSSVQHDTGSSAAPVGIGAK-PHHAFSVGSPAVGNNDRCELGARGAQEDGYTGDRTVRKFGTGGPEERGRRWAKQSVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTGESKGFGFVSYSKPDEAEAAISSMNGFFIGQKRLKVVRKRGQQTD 1215
            T+  Q T    S P ++   +      Q+ KLF+GM PK A E   R VF P G   +IY++R    G SKGCAF++++   SAS AIEA +  + M  G   LVV  AD RR     A       R+   +    +  L           GG    P L  +  Q    + A   GA A A  ++PGS                 NP    ++YY     ++    TG    P G+    P  A +   P          GA  A                      G R A Q  GP GANLF+Y+LP  LTDADLATAFAPFG V+SAKV+ D++TGESKGFGFVSY     A+AAI+SMNGF IG KRLKV  KR  Q +
Sbjct:  152 TLHNQVTLPMSSNPLQVRPAEGQAGASQEHKLFIGMIPKHADESSIREVFAPHGAIEEIYILRHPATGQSKGCAFLKFKDRHSASTAIEAFNGTYTMDRGTAPLVVKFADSRRQRIQRA-------RNQAATAAAAYWQL---------PPGGTIPFPQLQQIQQQYMQQMQA--FGAQALAGQMSPGSSPSPAA-----------NP--AAFMYYNQYAFAAASGYTGF---PSGVAPPFPLDALATAVP----------GAAAAS---------------------GARAATQLEGPAGANLFIYHLPHDLTDADLATAFAPFGTVISAKVFMDKNTGESKGFGFVSYDSVAAADAAIASMNGFQIGSKRLKVQHKRVHQRE 470          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1176.1137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K0Y1_9PHAE0.000e+092.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV61_ECTSI1.360e-28197.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FV60_ECTSI1.540e-6543.25Trinucleotide repeat containing 4, isoform CRA_d n... [more]
D0NNK0_PHYIT1.880e-4739.84CUG-BP-and ETR-3-like factor, putative n=17 Tax=Ph... [more]
A0A7S4QD22_9STRA2.300e-4639.13Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1W0A7F0_9STRA2.030e-4536.92CUG-BP-and ETR-3-like factor n=1 Tax=Thraustotheca... [more]
A0A484EFV5_BRELC4.130e-4538.59Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A3M6V9P8_9STRA3.360e-4437.81Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
H3GY92_PHYRM3.450e-4437.60Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A1V9ZMV5_9STRA6.380e-4436.72CUG-BP-and ETR-3-like factor n=1 Tax=Achlya hypogy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1176contigE-siliculosus-1a_F_contig1176:11588..13919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size1524
Model size1524
Exons3
Ec32 orthologEc-12_007410.1
Ec32 ortholog descriptionNucleotide-binding alpha-beta plait domain
Hectar predicted targeting categoryother localisation
BRITEko00000,ko03041
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.E
EggNOG OGsKOG0144@1,KOG0146@2759
EggNOG free text desc.positive regulation of mRNA splicing, via spliceosome
KEGG koko:K13207
Seed eggNOG ortholog2880.D7FV61
Seed ortholog evalue5.6e-222
Seed ortholog score776.9
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1176.1137.1prot_E-siliculosus-1a_F_contig1176.1137.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1176 11588..13919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927696.235075-CDS-E-siliculosus-1a_F_contig1176:11587..117101622927696.235075-CDS-E-siliculosus-1a_F_contig1176:11587..11710Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1176 11588..11710 +
1696318641.876607-CDS-E-siliculosus-1a_F_contig1176:11587..117101696318641.876607-CDS-E-siliculosus-1a_F_contig1176:11587..11710Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1176 11588..11710 +
1622927696.2499387-CDS-E-siliculosus-1a_F_contig1176:12246..132221622927696.2499387-CDS-E-siliculosus-1a_F_contig1176:12246..13222Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1176 12247..13222 +
1696318641.8880475-CDS-E-siliculosus-1a_F_contig1176:12246..132221696318641.8880475-CDS-E-siliculosus-1a_F_contig1176:12246..13222Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1176 12247..13222 +
1622927696.262297-CDS-E-siliculosus-1a_F_contig1176:13494..139191622927696.262297-CDS-E-siliculosus-1a_F_contig1176:13494..13919Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1176 13495..13919 +
1696318641.8971274-CDS-E-siliculosus-1a_F_contig1176:13494..139191696318641.8971274-CDS-E-siliculosus-1a_F_contig1176:13494..13919Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1176 13495..13919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1176.1137.1

>prot_E-siliculosus-1a_F_contig1176.1137.1 ID=prot_E-siliculosus-1a_F_contig1176.1137.1|Name=mRNA_E-siliculosus-1a_F_contig1176.1137.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=508bp
GPFSYEHRETAPPWSVGWLPTSPTMAEQHTDDAFSRPRELLLGDHAHTDQ
QKKKLFVGMAPKSAYEEDYRAVFEPFGTPIDIYVIRDRNGFSKGCAFVRY
ESVKSASDAIEALHDKHIMPGGFRTLVVTVADDRRGPQTSAVGTTTTRRD
AVGSGDGLFRSLSRPSSFMGSDSGGGGSIPSLGNVVGQNRSTVTAPQAGA
TAFAPTVAPGSGPSSGQLSGMPYFLCGGNPPQGTYVYYPYVPSSSVQHDT
GSSAAPVGIGAKPHHAFSVGSPAVGNNDRCELGARGAQEDGYTGDRTVRK
FGTGGPEERGRRWAKQSVGPTGANLFVYYLPGSLTDADLATAFAPFGEVL
SAKVYYDRDTGESKGFGFVSYSKPDEAEAAISSMNGFFIGQKRLKVVRKR
GQQTDRCLDSSSSSNSNNNINNGNNSNNNNNNIGRPSDPGYAAGDGSCGL
ARPDSGASGNAGTNVVVGSGMNNGNGDGTSHRSILGSGSQADLEFFTPEG
LLGPSMTR
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mRNA from alignment at E-siliculosus-1a_F_contig1176:11588..13919+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1176.1137.1 ID=mRNA_E-siliculosus-1a_F_contig1176.1137.1|Name=mRNA_E-siliculosus-1a_F_contig1176.1137.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2332bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1176:11588..13919+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCCCATTCTCATACGAGCACCGAGAGACGGCTCCTCCCTGGAGCGTCGG ATGGCTGCCGACTTCACCGACAATGGCTGAACAGCACACCGATGATGCTT TTTCCAGGCCTCGAGAGCTGTTGGTGAGGAGTCCATTAGCCATGCGATAC TTGTATTTGTTGCGTGTGCAGCCGCTGCTACGCTGGCGCATCCTCAATCT GTCGAGCTCACAAAGTAGCAGGGGGGGCGGGGGGTATAGCACAAGAATAT AAGAGTTACGAACCAACAACGTTGTTCGTGATTCTGCATAGTACTCCATA GCGGTCGTCGTCGAACGCATGGTGGAAAACATGACGGGGATCACACATAA ACTGGAATCAGTCGGCGAGGAGTTTCAAAGCTGAAACGTTTTTTGTTCAG TCCCGCCTTCTGCAAAAACAACTTGGTCGCACCCAGGCTGCGTGCGGCAT GAATAGAACTTGACGTTCCATTGCCTGCTTGGGTTGGTTTCTCAGGTTGT TCTAATTCGCCATCTTTCTTCTAGGCAAGCTGGTGCAAAACTGTGCAGAA ATTGTCCTGGTTTATCGCCGTGTTCCTAAAAGCACCAAAGCTTCGAAACT CCCACACTATAAGTAGTAACCTGCTTGCTTCTACATTGATCCTGGAAATC CTTAAACAGCTTGGCGATCACGCCCACACCGACCAGCAGAAAAAGAAGCT CTTTGTCGGTATGGCACCCAAGTCTGCGTACGAAGAAGACTACAGGGCTG TGTTCGAGCCTTTCGGCACACCGATCGACATCTACGTTATCAGGGACAGG AACGGTTTCAGCAAGGGCTGTGCGTTTGTCAGGTACGAGTCGGTTAAGAG CGCGAGCGATGCTATCGAGGCTCTTCACGACAAACACATCATGCCTGGAG GCTTCCGCACGCTGGTGGTGACTGTGGCCGACGATCGCCGCGGCCCACAG ACCTCTGCGGTTGGCACTACCACTACGCGCCGCGATGCTGTTGGCTCTGG AGACGGCCTTTTCCGCTCTCTGTCTCGACCTTCGTCCTTCATGGGGAGCG ACAGCGGCGGTGGAGGCAGCATCCCTAGCTTGGGGAACGTCGTGGGACAA AACAGGTCTACAGTTACGGCGCCGCAGGCAGGAGCGACAGCCTTCGCGCC CACCGTCGCTCCGGGCAGTGGTCCTTCTTCTGGTCAGCTCTCGGGCATGC CGTACTTTCTCTGCGGCGGCAACCCTCCGCAGGGGACGTACGTCTATTAC CCGTACGTGCCATCGTCGTCTGTCCAGCATGACACTGGTTCCTCTGCCGC CCCTGTCGGAATAGGGGCCAAACCCCACCACGCGTTTTCCGTCGGTTCTC CTGCGGTAGGAAACAACGATCGGTGCGAGCTGGGTGCTCGCGGGGCACAG GAGGACGGGTACACCGGGGATCGGACAGTCCGTAAGTTTGGCACCGGTGG CCCCGAAGAGAGGGGCCGGCGCTGGGCGAAACAGTCCGTCGGCCCCACGG GGGCAAACTTGTTCGTGTACTACCTTCCGGGCTCTCTCACGGACGCCGAT CTCGCGACAGCCTTCGCTCCGTTCGGAGAAGTTCTGAGCGCCAAGGTTTA CTACGACAGAGACACCGGAGAGAGCAAGGGGTTTGGTGAGAATATGGCAT GGTTTCGGCCGCGATAAAGTACCGCCGGGATTCACGGCTGTTGATATGGA GTAGCACCGCTGGTGGTGTTAACCTTCCGAGTCCATTCACAACACGTCGT AAATGCGTCTTTTCGGGCTGTGGGCGTGAAGTGCACCTCGAGATGATGAT GTACGCACTTTTGCACGTGCAGAAAGAAAGCCAAAAAATCGACATATAAT GTAACCCAGTTTCTCACTTCGTGAAGCCAATCCTCCCTCTGCCGATCGCC AATCCAGGGTTCGTGAGCTACTCCAAGCCGGATGAAGCGGAAGCCGCCAT CTCGAGCATGAATGGCTTCTTCATCGGACAAAAGCGTCTTAAGGTTGTCC GGAAACGCGGGCAGCAGACGGACCGCTGCCTCGACAGCAGCAGCAGCAGC AACAGCAACAACAACATCAACAACGGCAACAACAGCAACAACAACAACAA CAACATCGGTCGGCCCAGTGACCCTGGCTACGCTGCCGGCGATGGCTCAT GCGGATTGGCTCGACCCGACAGCGGAGCCAGCGGAAACGCCGGAACAAAC GTCGTGGTCGGCAGCGGGATGAACAACGGCAATGGAGATGGCACCAGCCA CCGCAGTATCCTCGGCTCTGGGTCACAGGCAGACCTAGAGTTCTTCACGC CCGAGGGCCTGCTTGGACCGTCGATGACGAGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1176:11588..13919+

>mRNA_E-siliculosus-1a_F_contig1176.1137.1 ID=mRNA_E-siliculosus-1a_F_contig1176.1137.1|Name=mRNA_E-siliculosus-1a_F_contig1176.1137.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3048bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1176:11588..13919+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCCCATTCTCATACGAGCACCGAGAGACGGCTCCTCCCTGGAGCGTCGG
ATGGCTGCCGACTTCACCGACAATGGCTGAACAGCACACCGATGATGCTT
TTTCCAGGCCTCGAGAGCTGTTGGGCCCATTCTCATACGAGCACCGAGAG
ACGGCTCCTCCCTGGAGCGTCGGATGGCTGCCGACTTCACCGACAATGGC
TGAACAGCACACCGATGATGCTTTTTCCAGGCCTCGAGAGCTGTTGCTTG
GCGATCACGCCCACACCGACCAGCAGAAAAAGAAGCTCTTTGTCGGTATG
GCACCCAAGTCTGCGTACGAAGAAGACTACAGGGCTGTGTTCGAGCCTTT
CGGCACACCGATCGACATCTACGTTATCAGGGACAGGAACGGTTTCAGCA
AGGGCTGTGCGTTTGTCAGGTACGAGTCGGTTAAGAGCGCGAGCGATGCT
ATCGAGGCTCTTCACGACAAACACATCATGCCTGGAGGCTTCCGCACGCT
GGTGGTGACTGTGGCCGACGATCGCCGCGGCCCACAGACCTCTGCGGTTG
GCACTACCACTACGCGCCGCGATGCTGTTGGCTCTGGAGACGGCCTTTTC
CGCTCTCTGTCTCGACCTTCGTCCTTCATGGGGAGCGACAGCGGCGGTGG
AGGCAGCATCCCTAGCTTGGGGAACGTCGTGGGACAAAACAGGTCTACAG
TTACGGCGCCGCAGGCAGGAGCGACAGCCTTCGCGCCCACCGTCGCTCCG
GGCAGTGGTCCTTCTTCTGGTCAGCTCTCGGGCATGCCGTACTTTCTCTG
CGGCGGCAACCCTCCGCAGGGGACGTACGTCTATTACCCGTACGTGCCAT
CGTCGTCTGTCCAGCATGACACTGGTTCCTCTGCCGCCCCTGTCGGAATA
GGGGCCAAACCCCACCACGCGTTTTCCGTCGGTTCTCCTGCGGTAGGAAA
CAACGATCGGTGCGAGCTGGGTGCTCGCGGGGCACAGGAGGACGGGTACA
CCGGGGATCGGACAGTCCGTAAGTTTGGCACCGGTGGCCCCGAAGAGAGG
GGCCGGCGCTGGGCGAAACAGTCCGTCGGCCCCACGGGGGCAAACTTGTT
CGTGTACTACCTTCCGGGCTCTCTCACGGACGCCGATCTCGCGACAGCCT
TCGCTCCGTTCGGAGAAGTTCTGAGCGCCAAGGTTTACTACGACAGAGAC
ACCGGAGAGAGCAAGGGGTTTGCTTGGCGATCACGCCCACACCGACCAGC
AGAAAAAGAAGCTCTTTGTCGGTATGGCACCCAAGTCTGCGTACGAAGAA
GACTACAGGGCTGTGTTCGAGCCTTTCGGCACACCGATCGACATCTACGT
TATCAGGGACAGGAACGGTTTCAGCAAGGGCTGTGCGTTTGTCAGGTACG
AGTCGGTTAAGAGCGCGAGCGATGCTATCGAGGCTCTTCACGACAAACAC
ATCATGCCTGGAGGCTTCCGCACGCTGGTGGTGACTGTGGCCGACGATCG
CCGCGGCCCACAGACCTCTGCGGTTGGCACTACCACTACGCGCCGCGATG
CTGTTGGCTCTGGAGACGGCCTTTTCCGCTCTCTGTCTCGACCTTCGTCC
TTCATGGGGAGCGACAGCGGCGGTGGAGGCAGCATCCCTAGCTTGGGGAA
CGTCGTGGGACAAAACAGGTCTACAGTTACGGCGCCGCAGGCAGGAGCGA
CAGCCTTCGCGCCCACCGTCGCTCCGGGCAGTGGTCCTTCTTCTGGTCAG
CTCTCGGGCATGCCGTACTTTCTCTGCGGCGGCAACCCTCCGCAGGGGAC
GTACGTCTATTACCCGTACGTGCCATCGTCGTCTGTCCAGCATGACACTG
GTTCCTCTGCCGCCCCTGTCGGAATAGGGGCCAAACCCCACCACGCGTTT
TCCGTCGGTTCTCCTGCGGTAGGAAACAACGATCGGTGCGAGCTGGGTGC
TCGCGGGGCACAGGAGGACGGGTACACCGGGGATCGGACAGTCCGTAAGT
TTGGCACCGGTGGCCCCGAAGAGAGGGGCCGGCGCTGGGCGAAACAGTCC
GTCGGCCCCACGGGGGCAAACTTGTTCGTGTACTACCTTCCGGGCTCTCT
CACGGACGCCGATCTCGCGACAGCCTTCGCTCCGTTCGGAGAAGTTCTGA
GCGCCAAGGTTTACTACGACAGAGACACCGGAGAGAGCAAGGGGTTTGGG
TTCGTGAGCTACTCCAAGCCGGATGAAGCGGAAGCCGCCATCTCGAGCAT
GAATGGCTTCTTCATCGGACAAAAGCGTCTTAAGGTTGTCCGGAAACGCG
GGCAGCAGACGGACCGCTGCCTCGACAGCAGCAGCAGCAGCAACAGCAAC
AACAACATCAACAACGGCAACAACAGCAACAACAACAACAACAACATCGG
TCGGCCCAGTGACCCTGGCTACGCTGCCGGCGATGGCTCATGCGGATTGG
CTCGACCCGACAGCGGAGCCAGCGGAAACGCCGGAACAAACGTCGTGGTC
GGCAGCGGGATGAACAACGGCAATGGAGATGGCACCAGCCACCGCAGTAT
CCTCGGCTCTGGGTCACAGGCAGACCTAGAGTTCTTCACGCCCGAGGGCC
TGCTTGGACCGTCGATGACGAGGGGTTCGTGAGCTACTCCAAGCCGGATG
AAGCGGAAGCCGCCATCTCGAGCATGAATGGCTTCTTCATCGGACAAAAG
CGTCTTAAGGTTGTCCGGAAACGCGGGCAGCAGACGGACCGCTGCCTCGA
CAGCAGCAGCAGCAGCAACAGCAACAACAACATCAACAACGGCAACAACA
GCAACAACAACAACAACAACATCGGTCGGCCCAGTGACCCTGGCTACGCT
GCCGGCGATGGCTCATGCGGATTGGCTCGACCCGACAGCGGAGCCAGCGG
AAACGCCGGAACAAACGTCGTGGTCGGCAGCGGGATGAACAACGGCAATG
GAGATGGCACCAGCCACCGCAGTATCCTCGGCTCTGGGTCACAGGCAGAC
CTAGAGTTCTTCACGCCCGAGGGCCTGCTTGGACCGTCGATGACGAGG
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