mRNA_E-siliculosus-1a_F_contig1175.1132.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1175.1132.1
Unique NamemRNA_E-siliculosus-1a_F_contig1175.1132.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1175.1132.1 vs. uniprot
Match: D7FS62_ECTSI (tRNA pseudouridine synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS62_ECTSI)

HSP 1 Score: 772 bits (1994), Expect = 3.510e-280
Identity = 392/413 (94.92%), Postives = 399/413 (96.61%), Query Frame = 1
Query:  133 MLAAVVSGGFPLLRGAVGLPTATAVPAPPLPSHVAMPVLCRARPRHQRWPNGNILGPSAGFISHLAVDTSSATRVLRACAPSTTIAPHGGAEEDFNRSTPPXSTTNNENQLAKARREARFDEEGEYRVFRELLEGKKTRFVSRVMYDGTNYKGFQLQGNGLPTVQGVLEKALSTRFQTYVPVVAAGRTDTGVHSVGQAVHFDLPNANEDLSQLAYSMNQMMPEDVRVWNMSVAPPSSPWQVEKGWPWSSMLNAHGKRYSYRLFVGPVMSPLDRLYRAHASQAAGSPINVDLLYQTMPKLVGTHDFAGFSNEVDKRATLKKEDGLGEFNTVRTVYSAEIIDEGGGNIRLDFHLDGALYRMVRNMVGALLAVAAGRLEPEVIDEMFATRVRDSRVIYAAPAHGLTLDTVLYDGYG 1371
            MLAAVVSGGF LLRGAVGL TATAVPAPPLPSHVAMPVLCRARPRHQRWPNG+I+GPSAGFISHLAVD SSATRVLR C PST IAPHGG EED  RSTPP STTNNE+Q AKARREARFDEEGEYRVFRELLEGKKTRFVSRVMYDGTNYKGFQLQG+GLPTVQGVLEKALSTRFQTYVPVVAAGRTDTGVHSVGQAVHFDLPNANEDLSQLAYSMNQMMPEDVRVWNMSVAPPSSPWQVEKGWPWSSMLNA GKRYSYRLFVGPVMSPLDRLYRAHASQAAGSPINVDLLYQT+PKLVG HDFAGFSNEV KRATLKKEDGLGEFNTVRTVYSAEIIDEGGGNIRLDFHLDGALYRMVRNMVGALLAVAAGRLEPEVIDE+FATRVRDSR+IYAAPAHGLTLDTVLYDGYG
Sbjct:    1 MLAAVVSGGFTLLRGAVGLATATAVPAPPLPSHVAMPVLCRARPRHQRWPNGSIVGPSAGFISHLAVDPSSATRVLRVCTPST-IAPHGGVEEDLPRSTPPRSTTNNESQQAKARREARFDEEGEYRVFRELLEGKKTRFVSRVMYDGTNYKGFQLQGHGLPTVQGVLEKALSTRFQTYVPVVAAGRTDTGVHSVGQAVHFDLPNANEDLSQLAYSMNQMMPEDVRVWNMSVAPPSSPWQVEKGWPWSSMLNARGKRYSYRLFVGPVMSPLDRLYRAHASQAAGSPINVDLLYQTIPKLVGKHDFAGFSNEVTKRATLKKEDGLGEFNTVRTVYSAEIIDEGGGNIRLDFHLDGALYRMVRNMVGALLAVAAGRLEPEVIDEIFATRVRDSRLIYAAPAHGLTLDTVLYDGYG 412          
BLAST of mRNA_E-siliculosus-1a_F_contig1175.1132.1 vs. uniprot
Match: R7QN10_CHOCR (tRNA pseudouridine synthase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN10_CHOCR)

HSP 1 Score: 205 bits (522), Expect = 1.530e-58
Identity = 121/288 (42.01%), Postives = 173/288 (60.07%), Query Frame = 1
Query:  541 KTRFVSRVMYDGTNYKGFQLQGNGLPTVQGVLEKALSTRFQTYVPVVAAGRTDTGVHSVGQAVHFDLPNAN-----EDLSQLAYSMNQMMPEDVRVWNMSVAPPSSPWQVEKGW--------PWSSMLNAHGKRYSYRLFVGPVMSPLDRLYRAHASQAAGSPINVDLLYQTMPKLVGTHDFAGFSNEVDKRATLKKEDGLGEFNTVRTVYSAEIIDEGGGNIRLDFHLDGALYRMVRNMVGALLAVAAGRLEPEVIDEMFATRVRDSRVI-YAAPAHGLTLDTVLYD 1362
            K R  +RV YDGT Y+G+Q Q +  PTVQG LE AL  +F   + VV A RTDTGVH+ GQA+HFD+P A      E   +  Y++NQM+P DVRV  +SVAP   P +V            PW ++ NA GK Y+YR+   PV  PL RLYR H  +A     + +LL +   K VG+HDF+ F+N  +              N +R ++SA +I EG G  R++F ++GA+YRM+RN++G +L+V+ G ++   ID +FA++  D R++  +APA GL L+ V+YD
Sbjct:   53 KQRIRARVAYDGTLYRGWQYQTDQ-PTVQGALEDALRRKFGHTIRVVGASRTDTGVHARGQAMHFDIPIARALRDGESERKFHYTLNQMLPPDVRVPVLSVAPTVVPCKVTDECGNVGIATRPWHAIYNAKGKLYTYRISTSPVFDPLGRLYRYHEWRATKFGFSEELLREASAKFVGSHDFSAFTNSTNPPPGFVPPV---LSNPIRHIHSATVIPEGAGMYRIEFVINGAMYRMIRNIMGTILSVSCGSMDISNIDHLFASK--DRRLVPKSAPAKGLCLEKVIYD 334          
BLAST of mRNA_E-siliculosus-1a_F_contig1175.1132.1 vs. uniprot
Match: F0Y1Q4_AURAN (tRNA pseudouridine synthase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1Q4_AURAN)

HSP 1 Score: 203 bits (516), Expect = 4.100e-58
Identity = 123/284 (43.31%), Postives = 161/284 (56.69%), Query Frame = 1
Query:  544 TRFVSRVMYDGTNYKGFQLQGNGLPTVQGVLEKALSTRFQ-TYVPVVAAGRTDTGVHSVGQAVHFDLPNA---NEDLSQLAYSMNQMMPEDVRVWNMSVAPPSSPWQVEKGWPWSSMLNAHGKRYSYRLFVGPVMS-PLDRLYRAHASQAAGSPINVDLLYQTMPKLVGTHDFAGFSNE---VDKRATLKKEDGLGEFNTVRTVYSAEIIDEGGGNIRLDFHLDGALYRMVRNMVGALLAVAAGRLEPEVIDEMFATRVRDS-RVIYAAPAHGLTLDTVLYDGY 1368
            TR+  RV YDGT +KG+Q+Q  G  TVQG L  AL TRF    +P + A RTD GVH+ GQ  H DLP A      L  L + +N+++P+D RV ++  AP   PWQ  +G PW ++ NA GKRY+YRL      + PL RLYR H    A   ++   L   +   VG HDFA F+N    +D     +        +T R + SA ++DEGGG+  L F LDGALY+MVRN+VGA +AVA G L  + I  + A   R +     AAPA GL L+ V YD Y
Sbjct:   33 TRYALRVAYDGTRFKGWQVQPGGARTVQGELNAALRTRFGGADIPTLGASRTDAGVHARGQCAHADLPVAPLGGAPLELLEHQINRLLPDDARVHDLRPAPAPKPWQAREGLPWHAIANAAGKRYAYRLTARRGSADPLGRLYRGHV---AYRDVDFGRLDDALSCFVGEHDFAAFANNAPGLDPSGAAR--------STTRAIRSATLLDEGGGDATLTFELDGALYKMVRNVVGAAVAVADGALPRDAIPALLAPGARRADNPAKAAPACGLCLEEVYYDDY 305          
BLAST of mRNA_E-siliculosus-1a_F_contig1175.1132.1 vs. uniprot
Match: A0A836CB05_9STRA (tRNA pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB05_9STRA)

HSP 1 Score: 201 bits (511), Expect = 1.250e-56
Identity = 122/284 (42.96%), Postives = 161/284 (56.69%), Query Frame = 1
Query:  550 FVSRVMYDGTNYKGFQLQGNGLPTVQGVLEKALSTRFQTYVPVVAAGRTDTGVHSVGQAVHFDLPNANED--------LSQLAYSMNQMMPEDVRVWNMSVAPPSSPWQVEKGWPWSSMLNAHGKRYSYRLFVGPVMSPLDRLYRAHASQAAGSPINVDLLYQTMPKLVGTHDFAGFSNEVDKRATLKKEDGLGEFNTVRTVYSAEIIDEGGGNIRLDFHLDGALYRMVRNMVGALLAVAAGRLEPEVIDEMFAT-----RVRDSRVIYAAPAHGLTLDTVLYD 1362
            + ++VMYDG  ++GFQLQ     TVQG LEKAL  RFQ  + V+ A RTD GVHS GQ VHFDLP +           ++ L Y +NQM+PEDVRV+ ++  P  SP Q ++G PWS+ +NA  K Y+YRL    V +PLD   RAH       P+++ +L  T+           FS++ DK A L    G G+ +TVRTV    +     G I +D  LDGALY+MVR MVGA +AVAAGR++  VI     +        D      APA GLTL+ V Y+
Sbjct:   80 YTAKVMYDGVGFRGFQLQPGNYRTVQGELEKALQKRFQRRISVLGASRTDAGVHSRGQVVHFDLPASGASALAYDPAAMALLQYCLNQMLPEDVRVYGLAPVPLPSPQQRQQGLPWSANVNARAKLYTYRLSFCDVTNPLDARQRAHYPPVLW-PVDLGVLEATL----------AFSSKADKSAALVAAAGRGDRDTVRTVVRITLRRGAPGYIDIDVLLDGALYKMVRYMVGAAVAVAAGRMDARVITTSLLSGNWEGSGADKSAAAPAPACGLTLEEVFYE 352          
BLAST of mRNA_E-siliculosus-1a_F_contig1175.1132.1 vs. uniprot
Match: A0A7S4MSL3_9STRA (tRNA pseudouridine synthase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MSL3_9STRA)

HSP 1 Score: 197 bits (501), Expect = 4.530e-55
Identity = 125/296 (42.23%), Postives = 166/296 (56.08%), Query Frame = 1
Query:  547 RFVSRVMYDGTNYKGFQLQGNGLPTVQGVLEKALSTRFQTYVPVVAAGRTDTGVHSVGQAVHFDLPNANE---------DLSQLAYSMNQMMPEDVRVWNMSVAPPSSPWQ----VEKGWPWSSMLNAHGKRYSYRLFVGPVMSPLDRLYRAHASQAAGSPINVDLLYQTMPKLVGTHDFAGFSNEVDKRATLKKEDGLGEFNTVRTVYSAEIIDEGGGNIRLDFHLDGALYRMVRNMVGALLAVAAGRLEPEVIDEMFATRVRDSRVIY----------AAPAHGLTLDTVLYDG 1365
            R+ +RV YDGT + G+Q Q  G  T+QG +E  LS RF   V +V AGRTD GVH+ GQA HFDL  A+E         DL QL  S+N M+  D+RVWN   APP S ++    +E+   W  + NA  K YSYR+   P + PL R  R H       P N++LL   +    GTHDF  F+  +D  A  +K   +    T+RTVY+  +++EG GN R+DF L GALY+MVRNM+G  LAVA GRLE + + E       + +V+           AAP  GLTL+ V +DG
Sbjct:   90 RYRARVAYDGTGFNGWQTQAKGR-TIQGDIEAVLSRRFDRPVRIVGAGRTDAGVHARGQAFHFDL-RADEIGVADSKCFDL-QLQRSLNSMLRRDIRVWNTCQAPPPSSYKNWEGIERNHKWHVIYNAEKKLYSYRISTAPYLDPLLRHTRTHVFD----PTNIELLRTALQHFEGTHDFRAFAGAID--ANERKSGKV--LGTIRTVYAVNLVEEGNGNYRVDFLLKGALYKMVRNMMGTALAVAQGRLEEDRLLEFLHHDSSEGKVLQFVRKDNKCKPAAP-EGLTLEHVYFDG 373          
BLAST of mRNA_E-siliculosus-1a_F_contig1175.1132.1 vs. uniprot
Match: A0A1Z5KP68_FISSO (tRNA pseudouridine synthase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KP68_FISSO)

HSP 1 Score: 194 bits (494), Expect = 9.280e-55
Identity = 121/294 (41.16%), Postives = 168/294 (57.14%), Query Frame = 1
Query:  547 RFVSRVMYDGTNYKGFQLQGNGLPTVQGVLEKALSTRFQTYVPVVAAGRTDTGVHSVGQAVHFDLPNA-NEDLSQLAYSMNQMMPEDVRVWNMSVAPP--SSPWQVEKGWPWSSMLNAHGKRYSYRLFVGPVMSPLDRLYRAHASQAAGSPINVDLLYQTMPKLVGTHDFAGFSN--EVDKRATLKKEDGLGEFNTVRTVYSAEII--DEGGGNIRLDFHLDGALYRMVRNMVGALLAVAAGRLEPEVIDEMF----AT-----------RVRDSRVIYAAPAHGLTLDTVLYD 1362
            R+ +RV YDG  + GFQLQ  G  TVQG LE  L  R    V +V AGRTDTGVH+ GQA+HFDL +  +E LSQ+ +S+N M+P DV +WN+S+AP   +   Q  + + W+ + N+ GK YSYRL + PVMSPL+R +R H     G  +++ LL + +    GTHDF  F+   E ++R + +        +TVRTVYSA  I  DE  G  R++FHL GALY+ VRNMVG  +  +   +  E   ++     AT           + R+      AP  GLTL+ V +D
Sbjct:   23 RYRARVAYDGAGFHGFQLQPEGKRTVQGCLEDVLGQRLGQSVRLVGAGRTDTGVHARGQAIHFDLHSPLSEPLSQIEHSINAMLPTDVCLWNLSLAPTDDTETAQPSQQYLWNVLYNSVGKLYSYRLCLAPVMSPLERHHRWHPDSLHGKAVDIPLLQRLLNYYEGTHDFRAFAGALEANQRRSGRT------VSTVRTVYSANWIVEDESLGYYRIEFHLQGALYKQVRNMVGTAIDASRSIITEEAFLDLLHGSSATIENDHLPKKQQKRREDNKSKPAPPQGLTLEHVYFD 310          
BLAST of mRNA_E-siliculosus-1a_F_contig1175.1132.1 vs. uniprot
Match: A0A7S3ST89_EMIHU (tRNA pseudouridine synthase n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3ST89_EMIHU)

HSP 1 Score: 189 bits (479), Expect = 1.960e-52
Identity = 126/290 (43.45%), Postives = 164/290 (56.55%), Query Frame = 1
Query:  547 RFVSRVMYDGTNYKGFQLQGNGLPTVQGVLEKALSTRFQT-YVPVVAAGRTDTGVHSVGQAVHFDLPNANEDLSQLAYSMNQMMPEDVRVWNMSVAPPSSPWQVE-KGWPWSSMLNAHGKRYSYRLFVGPV--MSPLDRLYRAHASQAAGSPINVDLLYQTMPKLVGTHDFAGFSNEVDKRATLKKEDGLGEFNTVRTVYSAEIIDEGGGNIRLDFHLDGALYRMVRNMVGALLAVAAGRLEPEVIDEMFATRVRDSRVIYA---------------APAHGLTLDTVLY 1359
            R+ +RV YDG  Y G Q Q    PTVQG L++AL+ R Q   V VVAAGRTD GVH+ GQAVHFDL +   D + L  S+  ++P D+ V ++  A      +V+  G  W ++  A GKRYSYRL+ GP     P  RLYR HA     SP+++D +  T   LVG  DF  F+N+    A   +   LG   TVRTV  A ++DEGGG +RLDF L GALY+MVRN  GAL+ V AGR   + +  + AT  +  R   +               APAHGLTL++V Y
Sbjct:   17 RYRARVSYDGGAYAGMQYQPTR-PTVQGTLQRALARRCQMPAVRVVAAGRTDAGVHARGQAVHFDLDSGTYDPADLERSLGALLPPDLAVSHVERAG-----EVDGAGRSWHAIFWATGKRYSYRLYAGPPGGRDPTTRLYRHHAHS---SPLDLDAMRTTAAALVGERDFRAFANKPRGSAPPYEASALG---TVRTVAEAAVVDEGGGCVRLDFVLKGALYKMVRNFAGALVDVGAGRRSGDDVAALLATPQQSLRSSGSGARLAGGVGAGWPKPAPAHGLTLESVYY 294          
BLAST of mRNA_E-siliculosus-1a_F_contig1175.1132.1 vs. uniprot
Match: A0A8J2SCD1_9STRA (tRNA pseudouridine synthase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SCD1_9STRA)

HSP 1 Score: 184 bits (467), Expect = 2.940e-51
Identity = 113/280 (40.36%), Postives = 159/280 (56.79%), Query Frame = 1
Query:  538 KKTRFVSRVMYDGTNYKGFQLQGNGLPTVQGVLEKALSTRFQ-TYVPVVAAGRTDTGVHSVGQAVHFDLPNANEDLSQLAYSMNQMMPEDVRVWNMSVAPPSSPWQVEKGWPWSSMLNAHGKRYSYRLFVG-PVMSPLDRLYRAHASQAAGSPINVDLLYQTMPKLVGTHDFAGFSNEVDKRATLKKEDGLGEFNTVRTVYSAEIIDEGGGNIRLDFHLDGALYRMVRNMVGALLAVAAGRLEPEVIDEMFATR-VRDSRVIYAAPAHGLTLDTVLYDGY 1368
            +  R+  RV YDGT++ G+Q Q N   TV+G L KA +TRF    VP++ A RTD+GVH+ GQA H DLP    D+  L + +N+M+P+DVR+  +  APP      EK  PW ++  + GKRYSYR+        PL+RLYRAH        ++  LL   + +  G  DF  F+N    +  L       E +T+R + S E  DEG G+  +   LDGALYRMVRN+VGA +A   G+L+ + +DE+ + R  R      +APA GL L+ V YD +
Sbjct:   14 RAARYALRVAYDGTHFNGWQHQPNAR-TVEGELRKAFTTRFDGANVPLLGASRTDSGVHARGQAAHVDLPEEVADVDLLKHQLNRMLPDDVRINCVREAPPGG----EK--PWHAIACSTGKRYSYRMTARYGSQDPLERLYRAHVCY---EDLDFALLSNALQRCRGRFDFKAFANNAPTQNPL-------EMDTIREIRSIEAEDEGFGDYTVQIELDGALYRMVRNVVGACVACGTGKLKLDELDELLSGRKTRRDNPTKSAPARGLCLEEVFYDDF 276          
BLAST of mRNA_E-siliculosus-1a_F_contig1175.1132.1 vs. uniprot
Match: A0A482SL84_9ARCH (tRNA pseudouridine synthase A n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SL84_9ARCH)

HSP 1 Score: 186 bits (472), Expect = 4.040e-51
Identity = 111/284 (39.08%), Postives = 160/284 (56.34%), Query Frame = 1
Query:  547 RFVSRVMYDGTNYKGFQLQGNG-LPTVQGVLEKALSTRFQTYVPVVAAGRTDTGVHSVGQAVHFDLPNAN----EDLSQLAYSMNQMMPEDVRVWNMSVAPPSSPWQVEKGWPWSSMLNAHGKRYSYRLFVGPVMSPLDRLYRAHASQAAGSPINVDLLYQTMPK----LVGTHDFAGFSNEVDKRATLKKEDGLGEFNTVRTVYSAEIIDEGGGNIRLDFHLDGALYRMVRNMVGALLAVAAGRLEPEVIDEMFATRV-RDSRVIYAAPAHGLTLDTVLYDGY 1368
            R+V+RV YDGT Y+G+Q Q      T+QG + + LS R    V +  AGRTD GVH+ GQ +HFDL +      + +    + +NQM+P D+RV+NMS+APP +  Q+  G P+ +  +A GK+Y YR      + P+ R    H  +        +  Y T+P      VG HDFA F N+V K+     E    E++T+RT+YS + IDEG G  R++FH+  ALY+M+RNMVGA ++VA G++  E I +M      R +      P  GL L+ V YD Y
Sbjct:   75 RYVARVSYDGTAYRGWQQQSQPRTKTIQGTINQNLSKRLSREVRITGAGRTDQGVHAKGQGIHFDLFDHEYLNPDSIPNFQFKLNQMLPTDIRVYNMSLAPPGTVEQMLTGDPFHATKSAIGKKYIYRYCTNQFVEPIHRHIYTHFYR--------EYDYSTLPDCLQCFVGPHDFACFGNKV-KQFVKDFETKPIEYDTMRTIYSIQHIDEGSGYYRIEFHIKSALYKMIRNMVGACVSVAKGQITKEDIVQMLVNPTQRINNPAIPVPPEGLILEHVYYDHY 349          
BLAST of mRNA_E-siliculosus-1a_F_contig1175.1132.1 vs. uniprot
Match: A0A5J4YW71_PORPP (tRNA pseudouridine synthase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YW71_PORPP)

HSP 1 Score: 186 bits (471), Expect = 1.020e-50
Identity = 120/297 (40.40%), Postives = 161/297 (54.21%), Query Frame = 1
Query:  526 LLEGKKTRFVSRVMYDGTNYKGFQLQGNGLPTVQGVLEKALSTRFQTYVPVVAAGRTDTGVHSVGQAVHFDLPNA--NEDLSQ--------LAYSMNQMMPEDVRVWNMSVAPPSSPWQVEKGW---PWSSMLNAHGKRYSYRLFVGPVMSPLDRLYRAHASQAAGSPINVDLLYQTMPKLVGTHDFAGFSNEVDKRATLKKEDGLGEFNTVRTVYSAEII-DEGGGNIR-LDFHLDGALYRMVRNMVGALLAVAAGRLEPEVIDEMFATRVRDSRVI-YAAPAHGLTLDTVLYDGY 1368
            +L G+  R    V YDGT ++G+Q Q N   +VQ  LEK  S R   +  VV A RTDTGVH+ GQ  HFD+P     EDL Q        L + +N+M+P +++V  M VAPP S  ++  G    PW S+  A  K YSY++     M PL+RLYR H  QA     + DL    + + VGTHDF+ F+N +     ++        N VRTV+S  +I DE    +  ++  L GALY+MVRNM+GA L VA   + PE ID +   R  D R+   AAPA GL LD + Y  Y
Sbjct:   90 VLRGETYRCRMTVAYDGTEFRGWQYQINTRNSVQATLEKVFSRRLNGFTRVVGASRTDTGVHARGQVAHFDIPEEIPKEDLQQDDSSGLSRLEFQVNRMLPANLQVLRMEVAPPPSLVKLPSGERLKPWHSIYCAQHKIYSYKIMFATCMDPLERLYRHHEYQAC----DTDLFEAALQRFVGTHDFSSFANRLSHGEVVR--------NPVRTVHSVRVIRDERDPRLMTVEVDLQGALYKMVRNMIGAALHVARHDMPPEHIDVLLGAR--DRRIAPKAAPARGLCLDRIFYADY 372          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1175.1132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS62_ECTSI3.510e-28094.92tRNA pseudouridine synthase n=2 Tax=Ectocarpus Tax... [more]
R7QN10_CHOCR1.530e-5842.01tRNA pseudouridine synthase n=1 Tax=Chondrus crisp... [more]
F0Y1Q4_AURAN4.100e-5843.31tRNA pseudouridine synthase n=1 Tax=Aureococcus an... [more]
A0A836CB05_9STRA1.250e-5642.96tRNA pseudouridine synthase n=1 Tax=Tribonema minu... [more]
A0A7S4MSL3_9STRA4.530e-5542.23tRNA pseudouridine synthase n=1 Tax=Odontella auri... [more]
A0A1Z5KP68_FISSO9.280e-5541.16tRNA pseudouridine synthase n=1 Tax=Fistulifera so... [more]
A0A7S3ST89_EMIHU1.960e-5243.45tRNA pseudouridine synthase n=3 Tax=Emiliania huxl... [more]
A0A8J2SCD1_9STRA2.940e-5140.36tRNA pseudouridine synthase n=1 Tax=Pelagomonas ca... [more]
A0A482SL84_9ARCH4.040e-5139.08tRNA pseudouridine synthase A n=1 Tax=archaeon Tax... [more]
A0A5J4YW71_PORPP1.020e-5040.40tRNA pseudouridine synthase n=1 Tax=Porphyridium p... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1175contigE-siliculosus-1a_F_contig1175:14139..16434 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1242
Model size1418
Exons3
Ec32 orthologEc-01_000690.1
Ec32 ortholog descriptionPseudouridine synthase I, TruA, C-terminal
Hectar predicted targeting categorysignal peptide
BRITEko00000,ko01000,ko03016
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EC5.4.99.12
EggNOG OGsCOG0101@1,KOG4393@2759
EggNOG free text desc.pseudouridine synthase activity
KEGG koko:K06173
Seed eggNOG ortholog2880.D7FS62
Seed ortholog evalue2.1e-222
Seed ortholog score778.1
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1175.1132.1prot_E-siliculosus-1a_F_contig1175.1132.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1175 14183..16302 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927695.6006851-UTR-E-siliculosus-1a_F_contig1175:14138..141821622927695.6006851-UTR-E-siliculosus-1a_F_contig1175:14138..14182Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1175 14139..14182 -
1696318641.522537-UTR-E-siliculosus-1a_F_contig1175:14138..141821696318641.522537-UTR-E-siliculosus-1a_F_contig1175:14138..14182Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1175 14139..14182 -
1622927695.6511464-UTR-E-siliculosus-1a_F_contig1175:16302..164341622927695.6511464-UTR-E-siliculosus-1a_F_contig1175:16302..16434Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1175 16303..16434 -
1696318641.56134-UTR-E-siliculosus-1a_F_contig1175:16302..164341696318641.56134-UTR-E-siliculosus-1a_F_contig1175:16302..16434Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1175 16303..16434 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927695.6114504-CDS-E-siliculosus-1a_F_contig1175:14182..147551622927695.6114504-CDS-E-siliculosus-1a_F_contig1175:14182..14755Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1175 14183..14755 -
1696318641.5350356-CDS-E-siliculosus-1a_F_contig1175:14182..147551696318641.5350356-CDS-E-siliculosus-1a_F_contig1175:14182..14755Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1175 14183..14755 -
1622927695.6242497-CDS-E-siliculosus-1a_F_contig1175:15241..154151622927695.6242497-CDS-E-siliculosus-1a_F_contig1175:15241..15415Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1175 15242..15415 -
1696318641.5436459-CDS-E-siliculosus-1a_F_contig1175:15241..154151696318641.5436459-CDS-E-siliculosus-1a_F_contig1175:15241..15415Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1175 15242..15415 -
1622927695.6378708-CDS-E-siliculosus-1a_F_contig1175:15807..163021622927695.6378708-CDS-E-siliculosus-1a_F_contig1175:15807..16302Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1175 15808..16302 -
1696318641.5524287-CDS-E-siliculosus-1a_F_contig1175:15807..163021696318641.5524287-CDS-E-siliculosus-1a_F_contig1175:15807..16302Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1175 15808..16302 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1175.1132.1

>prot_E-siliculosus-1a_F_contig1175.1132.1 ID=prot_E-siliculosus-1a_F_contig1175.1132.1|Name=mRNA_E-siliculosus-1a_F_contig1175.1132.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=414bp
MLAAVVSGGFPLLRGAVGLPTATAVPAPPLPSHVAMPVLCRARPRHQRWP
NGNILGPSAGFISHLAVDTSSATRVLRACAPSTTIAPHGGAEEDFNRSTP
PPSTTNNENQLAKARREARFDEEGEYRVFRELLEGKKTRFVSRVMYDGTN
YKGFQLQGNGLPTVQGVLEKALSTRFQTYVPVVAAGRTDTGVHSVGQAVH
FDLPNANEDLSQLAYSMNQMMPEDVRVWNMSVAPPSSPWQVEKGWPWSSM
LNAHGKRYSYRLFVGPVMSPLDRLYRAHASQAAGSPINVDLLYQTMPKLV
GTHDFAGFSNEVDKRATLKKEDGLGEFNTVRTVYSAEIIDEGGGNIRLDF
HLDGALYRMVRNMVGALLAVAAGRLEPEVIDEMFATRVRDSRVIYAAPAH
GLTLDTVLYDGYG*
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mRNA from alignment at E-siliculosus-1a_F_contig1175:14139..16434-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1175.1132.1 ID=mRNA_E-siliculosus-1a_F_contig1175.1132.1|Name=mRNA_E-siliculosus-1a_F_contig1175.1132.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2296bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1175:14139..16434- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGCATGTGGACACCTACACGCCTACAGGCTGCTGCTGTTTCAAACGCAAG CTACAACTAGCTGGCTTGACACTCTGCATACCTCTCTGCTCATAAACCTG CCATCAAGACCATAGGCTCAGGCAGTCAGTGGATGCTTGCAGCAGTGGTG AGCGGCGGCTTCCCCTTGCTCCGAGGAGCGGTGGGTCTCCCAACTGCTAC GGCTGTGCCGGCTCCTCCGCTACCCTCACATGTTGCCATGCCGGTGTTGT GTCGCGCTCGGCCGAGACATCAGCGTTGGCCAAATGGAAACATACTAGGG CCCAGCGCTGGATTCATTTCACACCTTGCCGTCGACACTTCCAGTGCTAC TCGTGTGTTGCGCGCGTGTGCACCATCGACTACTATTGCGCCGCATGGCG GGGCGGAAGAAGACTTCAACAGATCCACGCCACCACCCAGTACCACCAAC AACGAAAACCAACTGGCAAAGGCCAGACGAGAGGCCCGTTTCGACGAGGA GGGGGAGTACCGAGTGTTTCGAGAGCTGTTGGAGGGCAAAAAGACGCGGT TTGTATCGCGAGTCATGTACGACGGAACGAACTACAAAGGCTTTCAATTG CAAGGCAACGGCCTACCGACCGTACAGGTACGGATGGATGCCGATTACAG CAACGCCGTGTTCCTCCAGCTAGCTACAGCAGTGTGATGAAAGCAACAGA CGCACTTGTCCGACTCTGATTGAGCAGTGATAATATGGCGGCATTCTGTT CAGCGCTTGACTCCGCCGCCTACGTTACATTTAGCACCAAAGCAGCAGTT ACATTCAATGAAGAACATGAGAACATGAGCCTTGTTCTTCGCGGGATCCC ACATCCGGAGCCACCCTCTCTTTTCGGTGCTCGGACTGCTGTGATGTAGA CTACACTGGCTTTTCGTAGAATACACGAAGCAAACGACAGAGCAGTGCGT GGCCAAAGTTTCACTTGTGTACGCACCCATGTTTCCTGCCTTTTTCATTC TCCCTTCCTTCGCGAACAGGGAGTACTCGAAAAGGCGCTGTCGACGCGGT TTCAGACGTACGTGCCGGTTGTTGCCGCCGGACGGACGGACACCGGCGTG CACTCGGTTGGCCAAGCGGTGCATTTCGACCTGCCCAACGCCAACGAAGA CCTCTCGCAGCTCGCGTACTCCATGAATCAGATGATGCCAGAGGTGAATT GAATCATAGCCAGCCATCGATCGTCAAGAGACCTGTACTCTGAGGATTGT GGACCGCTCCCGCTTCCTGAAGTACCGTTAGAGGCGGAGAGATGGCAACC CACCTTAGAACGATTTTCAAAGCTCGACTGCTCCACAACCAAGCATGTGC CAACACCGAAAATGGTGATTTCGGAAACATCTCCTTGGGGGATTTTCCGT AGACGCATCGGGCTATTCCCGCACACACTTGGTCGCAGAGCGATCGAGCT TTCAAAATCGGTCGAAGGGGGGTGCCATCTCTCCGCCTCTTAAGGTTATT ATAGTGTTCTAACTAAACTAGGCACGAAAACCTCCTCCGTGGTACAAGAC TATGGCGTCGCGGAGGAGAAAATGGAAAGTTTGCAGCGTGCTCCGTTCCC TCCTTACCGTGTATCTTGCCAACAGCTCTCACACCCACTCCCGCCAACTG TCGGACTATATGCGTCATCTCTTTGCCAGGACGTTCGCGTGTGGAATATG TCGGTTGCCCCGCCAAGCTCTCCCTGGCAAGTGGAGAAAGGCTGGCCCTG GTCCTCCATGCTCAACGCTCACGGCAAGCGCTACAGCTACCGGCTGTTCG TGGGACCCGTAATGAGCCCTCTCGATCGACTATACAGGGCGCATGCTAGC CAAGCCGCGGGGTCACCCATCAACGTCGACCTTCTTTACCAAACGATGCC CAAGCTCGTGGGGACGCATGACTTCGCCGGGTTCTCTAACGAGGTTGACA AGAGGGCGACTCTCAAAAAGGAGGACGGGCTTGGGGAATTCAACACCGTG AGAACCGTTTACTCGGCGGAGATCATCGACGAGGGGGGTGGTAACATCCG ACTGGACTTCCACTTGGACGGGGCTTTGTATCGCATGGTTAGGAATATGG TCGGGGCTTTGTTGGCCGTGGCTGCTGGTCGGTTGGAGCCTGAGGTTATA GATGAGATGTTTGCAACACGCGTCAGAGATTCTCGTGTGATATATGCCGC GCCGGCGCACGGCCTGACGCTCGACACCGTGTTGTACGATGGCTACGGTT AACACAATTCAAACAAAATACATCGGATTGGCTCCTGGAACTGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1175:14139..16434-

>mRNA_E-siliculosus-1a_F_contig1175.1132.1 ID=mRNA_E-siliculosus-1a_F_contig1175.1132.1|Name=mRNA_E-siliculosus-1a_F_contig1175.1132.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2484bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1175:14139..16434- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTTGCAGCAGTGGTGAGCGGCGGCTTCCCCTTGCTCCGAGGAGCGGT
GGGTCTCCCAACTGCTACGGCTGTGCCGGCTCCTCCGCTACCCTCACATG
TTGCCATGCCGGTGTTGTGTCGCGCTCGGCCGAGACATCAGCGTTGGCCA
AATGGAAACATACTAGGGCCCAGCGCTGGATTCATTTCACACCTTGCCGT
CGACACTTCCAGTGCTACTCGTGTGTTGCGCGCGTGTGCACCATCGACTA
CTATTGCGCCGCATGGCGGGGCGGAAGAAGACTTCAACAGATCCACGCCA
CCACCCAGTACCACCAACAACGAAAACCAACTGGCAAAGGCCAGACGAGA
GGCCCGTTTCGACGAGGAGGGGGAGTACCGAGTGTTTCGAGAGCTGTTGG
AGGGCAAAAAGACGCGGTTTGTATCGCGAGTCATGTACGACGGAACGAAC
TACAAAGGCTTTCAATTGCAAGGCAACGGCCTACCGACCGTACAGATGCT
TGCAGCAGTGGTGAGCGGCGGCTTCCCCTTGCTCCGAGGAGCGGTGGGTC
TCCCAACTGCTACGGCTGTGCCGGCTCCTCCGCTACCCTCACATGTTGCC
ATGCCGGTGTTGTGTCGCGCTCGGCCGAGACATCAGCGTTGGCCAAATGG
AAACATACTAGGGCCCAGCGCTGGATTCATTTCACACCTTGCCGTCGACA
CTTCCAGTGCTACTCGTGTGTTGCGCGCGTGTGCACCATCGACTACTATT
GCGCCGCATGGCGGGGCGGAAGAAGACTTCAACAGATCCACGCCACCACC
CAGTACCACCAACAACGAAAACCAACTGGCAAAGGCCAGACGAGAGGCCC
GTTTCGACGAGGAGGGGGAGTACCGAGTGTTTCGAGAGCTGTTGGAGGGC
AAAAAGACGCGGTTTGTATCGCGAGTCATGTACGACGGAACGAACTACAA
AGGCTTTCAATTGCAAGGCAACGGCCTACCGACCGTACAGGGAGTACTCG
AAAAGGCGCTGTCGACGCGGTTTCAGACGTACGTGCCGGTTGTTGCCGCC
GGACGGACGGACACCGGCGTGCACTCGGTTGGCCAAGCGGTGCATTTCGA
CCTGCCCAACGCCAACGAAGACCTCTCGCAGCTCGCGTACTCCATGAATC
AGATGATGCCAGAGGGAGTACTCGAAAAGGCGCTGTCGACGCGGTTTCAG
ACGTACGTGCCGGTTGTTGCCGCCGGACGGACGGACACCGGCGTGCACTC
GGTTGGCCAAGCGGTGCATTTCGACCTGCCCAACGCCAACGAAGACCTCT
CGCAGCTCGCGTACTCCATGAATCAGATGATGCCAGAGGACGTTCGCGTG
TGGAATATGTCGGTTGCCCCGCCAAGCTCTCCCTGGCAAGTGGAGAAAGG
CTGGCCCTGGTCCTCCATGCTCAACGCTCACGGCAAGCGCTACAGCTACC
GGCTGTTCGTGGGACCCGTAATGAGCCCTCTCGATCGACTATACAGGGCG
CATGCTAGCCAAGCCGCGGGGTCACCCATCAACGTCGACCTTCTTTACCA
AACGATGCCCAAGCTCGTGGGGACGCATGACTTCGCCGGGTTCTCTAACG
AGGTTGACAAGAGGGCGACTCTCAAAAAGGAGGACGGGCTTGGGGAATTC
AACACCGTGAGAACCGTTTACTCGGCGGAGATCATCGACGAGGGGGGTGG
TAACATCCGACTGGACTTCCACTTGGACGGGGCTTTGTATCGCATGGTTA
GGAATATGGTCGGGGCTTTGTTGGCCGTGGCTGCTGGTCGGTTGGAGCCT
GAGGTTATAGATGAGATGTTTGCAACACGCGTCAGAGATTCTCGTGTGAT
ATATGCCGCGCCGGCGCACGGCCTGACGCTCGACACCGTGTTGTACGATG
GCTACGGTTAAGACGTTCGCGTGTGGAATATGTCGGTTGCCCCGCCAAGC
TCTCCCTGGCAAGTGGAGAAAGGCTGGCCCTGGTCCTCCATGCTCAACGC
TCACGGCAAGCGCTACAGCTACCGGCTGTTCGTGGGACCCGTAATGAGCC
CTCTCGATCGACTATACAGGGCGCATGCTAGCCAAGCCGCGGGGTCACCC
ATCAACGTCGACCTTCTTTACCAAACGATGCCCAAGCTCGTGGGGACGCA
TGACTTCGCCGGGTTCTCTAACGAGGTTGACAAGAGGGCGACTCTCAAAA
AGGAGGACGGGCTTGGGGAATTCAACACCGTGAGAACCGTTTACTCGGCG
GAGATCATCGACGAGGGGGGTGGTAACATCCGACTGGACTTCCACTTGGA
CGGGGCTTTGTATCGCATGGTTAGGAATATGGTCGGGGCTTTGTTGGCCG
TGGCTGCTGGTCGGTTGGAGCCTGAGGTTATAGATGAGATGTTTGCAACA
CGCGTCAGAGATTCTCGTGTGATATATGCCGCGCCGGCGCACGGCCTGAC
GCTCGACACCGTGTTGTACGATGGCTACGGTTAA
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