mRNA_E-siliculosus-1a_F_contig1174.1128.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1174.1128.1 vs. uniprot
Match: D8LBY3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY3_ECTSI) HSP 1 Score: 160 bits (404), Expect = 2.050e-39 Identity = 76/82 (92.68%), Postives = 79/82 (96.34%), Query Frame = 1
Query: 1 MAQMDRDALVALYRATGGENWREQENWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGKLGSLQQLHLSWNKLS 246
MAQ DRDALV LYRATGGENWRE++NWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGKLG+LQQLHLS NKLS
Sbjct: 1 MAQTDRDALVVLYRATGGENWRERQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGKLGNLQQLHLSSNKLS 82
BLAST of mRNA_E-siliculosus-1a_F_contig1174.1128.1 vs. uniprot
Match: A0A6H5JK91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK91_9PHAE) HSP 1 Score: 143 bits (361), Expect = 8.240e-38 Identity = 67/73 (91.78%), Postives = 70/73 (95.89%), Query Frame = 1
Query: 1 MAQMDRDALVALYRATGGENWREQENWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGKLGSLQQ 219
MAQ DRDALVALYRATGGENWRE +NWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLG+L +LQQ
Sbjct: 1 MAQTDRDALVALYRATGGENWRESQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGQLANLQQ 73
BLAST of mRNA_E-siliculosus-1a_F_contig1174.1128.1 vs. uniprot
Match: A0A6H5K3C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C2_9PHAE) HSP 1 Score: 103 bits (258), Expect = 6.210e-24 Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = 1
Query: 1 MAQMDRDALVALYRATGGENWREQENWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEG 177
MAQ DRDALVA+YRATGGE W +NWDTD+DLKTWHGV+VNDQGRVVKL+L NNLEG
Sbjct: 1 MAQTDRDALVAMYRATGGEKWSTSQNWDTDSDLKTWHGVNVNDQGRVVKLELGFNNLEG 59
BLAST of mRNA_E-siliculosus-1a_F_contig1174.1128.1 vs. uniprot
Match: A0A6H5K3D6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3D6_9PHAE) HSP 1 Score: 100 bits (248), Expect = 2.110e-22 Identity = 48/77 (62.34%), Postives = 57/77 (74.03%), Query Frame = 1
Query: 13 DRDALVALYRATGGENWREQENWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGKLGSLQQLHLSWNKL 243
DR ALVAL+ ATGG NW++ W+TDA L W+GV+VND GRVVKL LR NNL+G IP LG LG+L L+L NKL
Sbjct: 12 DRAALVALFNATGGANWKKNTKWNTDAPLGQWYGVEVNDAGRVVKLSLRYNNLKGHIPRQLGDLGALMTLNLGVNKL 88
BLAST of mRNA_E-siliculosus-1a_F_contig1174.1128.1 vs. uniprot
Match: D8LF65_ECTSI (Hypothetical leucine-rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF65_ECTSI) HSP 1 Score: 99.4 bits (246), Expect = 1.270e-21 Identity = 46/77 (59.74%), Postives = 56/77 (72.73%), Query Frame = 1
Query: 1 MAQMDRDALVALYRATGGENWREQENWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGKLGSLQQLHLS 231
M+ MDR AL+AL+R+T G NW+ NWDTDA+L TW GV+VND+GRVV+L L DNNL G IP LG L L L +S
Sbjct: 1 MSTMDRAALIALFRSTDGANWKTNSNWDTDAELATWAGVEVNDEGRVVQLILPDNNLHGPIPEALGTLNELTHLSMS 77
BLAST of mRNA_E-siliculosus-1a_F_contig1174.1128.1 vs. uniprot
Match: A0A6H5KQP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQP2_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 1.810e-20 Identity = 45/74 (60.81%), Postives = 57/74 (77.03%), Query Frame = 1
Query: 1 MAQMDRDALVALYRATGGENWREQENWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGKLGSLQQL 222
M DR+ALV+L+R+TGG W ++NWDTDADL TW+GV+VN QGRVV L L+ NNL+G IP LGKL +L+ L
Sbjct: 1 MVSTDREALVSLFRSTGGAGWIRRDNWDTDADLATWNGVNVNVQGRVVNLDLQYNNLQGSIPPELGKLAALRAL 74
BLAST of mRNA_E-siliculosus-1a_F_contig1174.1128.1 vs. uniprot
Match: D8LL09_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL09_ECTSI) HSP 1 Score: 101 bits (251), Expect = 2.550e-20 Identity = 46/77 (59.74%), Postives = 56/77 (72.73%), Query Frame = 1
Query: 1 MAQMDRDALVALYRATGGENWREQENWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGKLGSLQQLHLS 231
M Q DRDALVALY A GG NW+ NW+ DADL WHG+++NDQGRVV++ L NNL+G IP LG L L++L LS
Sbjct: 51 MPQTDRDALVALYDAAGGFNWKNNGNWNADADLSKWHGININDQGRVVEVHLAANNLQGSIPEALGALSKLERLWLS 127
BLAST of mRNA_E-siliculosus-1a_F_contig1174.1128.1 vs. uniprot
Match: A0A6H5K8T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T5_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 5.960e-20 Identity = 46/77 (59.74%), Postives = 56/77 (72.73%), Query Frame = 1
Query: 13 DRDALVALYRATGGENWREQENWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGKLGSLQQLHLSWNKL 243
DRDALVALY AT G NW+ ++NW+TD L W GV+ NDQGRVV L L DN L G IP+ LG L +LQ+L+L N+L
Sbjct: 112 DRDALVALYDATDGANWKSKQNWNTDLPLGRWRGVEANDQGRVVGLDLPDNKLHGHIPSDLGHLSALQKLNLLSNQL 188
BLAST of mRNA_E-siliculosus-1a_F_contig1174.1128.1 vs. uniprot
Match: A0A6H5L6T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6T0_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 3.160e-19 Identity = 44/75 (58.67%), Postives = 56/75 (74.67%), Query Frame = 1
Query: 1 MAQMDRDALVALYRATGGENWREQENWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGKLGSLQQLH 225
M+ DR+AL+AL+R+TGG W ++NWDTDA L TW GV+VNDQGRVV L L NNL+G IP+ LG L +L L+
Sbjct: 19 MSSTDREALIALFRSTGGAGWWRRDNWDTDAVLATWDGVNVNDQGRVVGLSLIRNNLQGPIPSKLGNLSALTALY 93
BLAST of mRNA_E-siliculosus-1a_F_contig1174.1128.1 vs. uniprot
Match: D7FXI0_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI0_ECTSI) HSP 1 Score: 95.5 bits (236), Expect = 3.340e-19 Identity = 43/68 (63.24%), Postives = 51/68 (75.00%), Query Frame = 1
Query: 1 MAQMDRDALVALYRATGGENWREQENWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGKL 204
M+ DR+AL+AL+R+TGG W ++NWDTDA L TWHGV VNDQGRVV L L NNL+G IP LG L
Sbjct: 1 MSSTDREALIALFRSTGGAGWMRRDNWDTDAVLGTWHGVKVNDQGRVVMLSLDQNNLQGHIPRQLGDL 68 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1174.1128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1174.1128.1 >prot_E-siliculosus-1a_F_contig1174.1128.1 ID=prot_E-siliculosus-1a_F_contig1174.1128.1|Name=mRNA_E-siliculosus-1a_F_contig1174.1128.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=389bp MAQMDRDALVALYRATGGENWREQENWDTDADLKTWHGVDVNDQGRVVKLback to top mRNA from alignment at E-siliculosus-1a_F_contig1174:12170..28573- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1174.1128.1 ID=mRNA_E-siliculosus-1a_F_contig1174.1128.1|Name=mRNA_E-siliculosus-1a_F_contig1174.1128.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=16404bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1174:12170..28573- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1174:12170..28573- >mRNA_E-siliculosus-1a_F_contig1174.1128.1 ID=mRNA_E-siliculosus-1a_F_contig1174.1128.1|Name=mRNA_E-siliculosus-1a_F_contig1174.1128.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2334bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1174:12170..28573- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |