mRNA_E-siliculosus-1a_F_contig1173.1124.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1173.1124.1
Unique NamemRNA_E-siliculosus-1a_F_contig1173.1124.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1173.1124.1 vs. uniprot
Match: A0A6H5K749_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K749_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 3.860e-58
Identity = 105/109 (96.33%), Postives = 106/109 (97.25%), Query Frame = 2 
Query:   32 MATRRRHSTRCWPRAAALALSLAGGCLSGVAPPSVPPGWTVHFQQDTPYFYNEKTGETTWEQPRPTTTSDPATAVAPSAASAATPGYLAAAGTNEPRSPSSSQRDISSQ 358
            MATRRRHSTRCWPRAAALALSLAGGCLSGVAPPSVPPGWTVHFQQDTPYFYNEKTGETTWEQPR TTT+DPATAVAPSAASAATPGYLAAAGTNEPRSPSSS RD SSQ
Sbjct:    1 MATRRRHSTRCWPRAAALALSLAGGCLSGVAPPSVPPGWTVHFQQDTPYFYNEKTGETTWEQPRRTTTADPATAVAPSAASAATPGYLAAAGTNEPRSPSSSHRDFSSQ 109
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1173.1124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K749_9PHAE3.860e-5896.33WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1173contigE-siliculosus-1a_F_contig1173:26203..29033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size423
Model size456
Exons2
Hectar predicted targeting categorysignal peptide
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1173.1124.1prot_E-siliculosus-1a_F_contig1173.1124.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1173 26234..29033 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927693.9727051-UTR-E-siliculosus-1a_F_contig1173:26202..262331622927693.9727051-UTR-E-siliculosus-1a_F_contig1173:26202..26233Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1173 26203..26233 +
1696318640.846129-UTR-E-siliculosus-1a_F_contig1173:26202..262331696318640.846129-UTR-E-siliculosus-1a_F_contig1173:26202..26233Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1173 26203..26233 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927693.9906335-CDS-E-siliculosus-1a_F_contig1173:26233..263801622927693.9906335-CDS-E-siliculosus-1a_F_contig1173:26233..26380Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1173 26234..26380 +
1696318640.853915-CDS-E-siliculosus-1a_F_contig1173:26233..263801696318640.853915-CDS-E-siliculosus-1a_F_contig1173:26233..26380Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1173 26234..26380 +
1622927694.003151-CDS-E-siliculosus-1a_F_contig1173:28757..290331622927694.003151-CDS-E-siliculosus-1a_F_contig1173:28757..29033Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1173 28758..29033 +
1696318640.8616397-CDS-E-siliculosus-1a_F_contig1173:28757..290331696318640.8616397-CDS-E-siliculosus-1a_F_contig1173:28757..29033Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1173 28758..29033 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1173.1124.1

>prot_E-siliculosus-1a_F_contig1173.1124.1 ID=prot_E-siliculosus-1a_F_contig1173.1124.1|Name=mRNA_E-siliculosus-1a_F_contig1173.1124.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=141bp
MATRRRHSTRCWPRAAALALSLAGGCLSGVAPPSVPPGWTVHFQQDTPYF
YNEKTGETTWEQPRPTTTSDPATAVAPSAASAATPGYLAAAGTNEPRSPS
SSQRDISSQPPDRGGRPPSSSAAGGGGARKRGWFGLRRQAA
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mRNA from alignment at E-siliculosus-1a_F_contig1173:26203..29033+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1173.1124.1 ID=mRNA_E-siliculosus-1a_F_contig1173.1124.1|Name=mRNA_E-siliculosus-1a_F_contig1173.1124.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2831bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1173:26203..29033+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGAACAAGCAAAGCAGGCAACACACACCACGATGGCTACACGACGACGAC
ATTCGACGAGGTGCTGGCCGCGAGCAGCTGCTTTAGCTCTTAGCCTTGCT
GGCGGGTGCCTCAGTGGAGTGGCACCGCCGAGCGTGCCCCCGGGATGGAC
AGTCCATTTCCAGCAGGACACACCATATGTGAGTTGTGGGACTTCGACAT
ATACAGCAGTACAACGACTCAACGACTCACAGGCTTTTGGCGGACATGAA
CAACAGCATGATTACTAAACGAGAACAACCAAAGTCTTTCGTCTGATGAA
GCTCGGGGTGCTGCTTGGTTTGTTCATGGTCGAGCGGTTCCGAAGTTCGA
CGAGAGACAACCGACGTTGGGTGTGCTTCTCCACAACGGCGTAAAAGATG
CTGCTGTGGTACTTGTAACCTCGCTCGGTCCTACAGAGCGCCGCGTGGCG
TGTGCGCGTCCCTGGGCATTTTGCTCTCTTTGGCGTGTGCTGCTTGTGCT
GGTCTGAGAAAGAGCAACCTTGGATCCTCTCGAATCGTTGTGTGCAGAGC
TTTTTGCCTGTACTTTTTGGCACGCGTGCCTCTGGCATGCTGGTGGAATT
TCGAAATCTTCGGTTCGTTTTACCAGCGTCATGTGGTACGTAATCTTACC
CACAGACCTTCGTTGAGCTTCGTAACACATGTACTGCATGCACACTGAAC
CAGTTCACAGCACTACTGCTGTTAACCGTATTACAACTACTGCAGGACTG
CTTTAGTGTCGGCTCTGCTACTGCAGTGCCGAAAGAGGGGGAGATATGGC
ACCCCTCGTATAGACCAATCTTCAAAGCTCCACATCATTGCTCCACAACC
AAGATTAGGATTGTGAACATGAAGGATGGTGGTTTTTGGAAGCATCGCGT
CCGAGATATATCCGTGGACGCAGTATCGCGCTCTTTCCGCACCCCCTTTG
GTTGGGGAGCAAGCAAGCTTTGAACATCGATCTAGGGGGGTGGGGGCGTA
CTCATTTGTTGCTTGCCTTAGTCATTTGACCATTGACCACGCGTCCCTTT
CGAGACGGAGCACCGTTCCTACCTACCCCTACTAACGACACCACCAACAT
TTGGGAGCTCTTTTACGTTTCTGCCACAAACTACATATAAAAATTTCTTG
CACATCTTATCCCCGTCCTCTAGGGCTTCTTGTGCCCACCATCTATCCCC
AATTATCGCGATCTTTTTTTCGAACATCGACCTAGGGGGGCTGCCATCTC
TCCGCTTCTTTCGGTAACCAACTGAGCAGGCGCTTTCCTGAGAATCACGC
GTTTCCTCTGAACCAAACCCAGCGCTGTCGTCTTCTGCTGGCGGTGCACC
GGCTGATTTGGTATAGCTACAATTGTATCTAGGTGTGGCTGACATTATAA
TTTCTGTTGTGAACACAGCAGTGCACCCACCCTCAACAACCAACTACCGC
CGTAGGTGACATAATACACCACACCCGGTGTGATGGATTTTTTTTTAAAT
TCATCACACGGTCATCACACGGTGGTACTCTGTAGGGGGGTGTTATCTTG
TGTGATCCGTGTGAAAAAACTACATTCAAAGGACTCCACCCCGCAGGGTG
TGTGATCAAGATGCGGTGTGATAATGTCATCCGTGAGATAAAAGTGCGCC
CGCACGACCCCATCAACAGGGGTATAATAACAAAGGGCTGTGGTATAGAT
GGGGCCTGAAAATGTCACCCGTATGATGAACTGCGTCCACACAACCCCTA
CAGGGGGTATGATATCGAGGTAAATAGTGTGTTAATCACGGAGTGTGATA
ACGTTACACATATCATGTGCGGGCGTCAGCAGCACTGGCGGTGGCAAACA
CAGCGGGTGGTGCGGGAGGTCTCAAAGACCACAGAAAAAAATGACGTAAT
TGGCCGTGGCGCCGCCGCTGGAGTCTGACCCACCGCCATCTGAGCCGCGA
TGCTTTCGGGGTGTGTGCTTCATTCATCTCCGCTGTGTTGTCCGTCACCG
TACCTCTAGCGCAGGGTTGCGTGCACTTTATGCGTGATCACGGCCTTTGT
ACCACACCGGTGCAAGACCGGTGTGATACGGGGCTCCGTGGATATGTATT
TTCCGCTCAATAAAGGGGGTGTGGTATCTTCTGTGCTTCCGCGCCCGTGT
GGTATATAGGTGCTTTTTCCAGGATTGAAAAAAAAATGATCACACGGGTG
TGGTTTTCTCTACATTTCGTTGGGGTGTGGTGTCTTCTGCGGGTGTGGTT
CTTGTGTCGCCTACCGTATTGCTGTACCTCCCGAGGTATTGCTGTACCTC
CTTCGCCCCCGCCGCTTTACCCATCCTTCCCCCACCACCCTCTTGCCACC
TAACACCAAATCGCAAGACCCAACATGCATCGTATCGCCGAACCCAAGCG
TGCTTACTCTGCACATGGCATGCCGACAACCCTCTGATGGTGATATGCGT
ACGTGCATCACTTCGGTCGCCTCTCGCACTTGGCCGCCCGCGTCCCCCCG
TCCGCTCTACTTCCACCCGTTATTCCGTGGGGCCCGTGGTGGTCGGTCGT
CGCAGTTTTACAACGAGAAGACGGGCGAAACGACGTGGGAACAGCCTCGT
CCCACCACGACTTCTGATCCAGCAACAGCGGTGGCTCCATCGGCTGCTTC
GGCTGCGACACCCGGATACCTCGCCGCCGCCGGAACCAACGAACCGCGGT
CGCCTTCTTCTTCCCAGCGAGACATCTCCTCACAGCCTCCGGATCGGGGA
GGACGCCCACCCTCCTCCTCTGCCGCCGGTGGAGGTGGGGCCAGGAAGCG
GGGCTGGTTTGGCTTGCGACGCCAGGCTGCA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1173:26203..29033+

>mRNA_E-siliculosus-1a_F_contig1173.1124.1 ID=mRNA_E-siliculosus-1a_F_contig1173.1124.1|Name=mRNA_E-siliculosus-1a_F_contig1173.1124.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=846bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1173:26203..29033+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCTACACGACGACGACATTCGACGAGGTGCTGGCCGCGAGCAGCTGC
TTTAGCTCTTAGCCTTGCTGGCGGGTGCCTCAGTGGAGTGGCACCGCCGA
GCGTGCCCCCGGGATGGACAGTCCATTTCCAGCAGGACACACCATATATG
GCTACACGACGACGACATTCGACGAGGTGCTGGCCGCGAGCAGCTGCTTT
AGCTCTTAGCCTTGCTGGCGGGTGCCTCAGTGGAGTGGCACCGCCGAGCG
TGCCCCCGGGATGGACAGTCCATTTCCAGCAGGACACACCATATTTTTAC
AACGAGAAGACGGGCGAAACGACGTGGGAACAGCCTCGTCCCACCACGAC
TTCTGATCCAGCAACAGCGGTGGCTCCATCGGCTGCTTCGGCTGCGACAC
CCGGATACCTCGCCGCCGCCGGAACCAACGAACCGCGGTCGCCTTCTTCT
TCCCAGCGAGACATCTCCTCACAGCCTCCGGATCGGGGAGGACGCCCACC
CTCCTCCTCTGCCGCCGGTGGAGGTGGGGCCAGGAAGCGGGGCTGGTTTG
GCTTGCGACGCCAGGCTGCATTTTACAACGAGAAGACGGGCGAAACGACG
TGGGAACAGCCTCGTCCCACCACGACTTCTGATCCAGCAACAGCGGTGGC
TCCATCGGCTGCTTCGGCTGCGACACCCGGATACCTCGCCGCCGCCGGAA
CCAACGAACCGCGGTCGCCTTCTTCTTCCCAGCGAGACATCTCCTCACAG
CCTCCGGATCGGGGAGGACGCCCACCCTCCTCCTCTGCCGCCGGTGGAGG
TGGGGCCAGGAAGCGGGGCTGGTTTGGCTTGCGACGCCAGGCTGCA
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