mRNA_E-siliculosus-1a_F_contig1171.1111.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1171.1111.1
Unique NamemRNA_E-siliculosus-1a_F_contig1171.1111.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1171.1111.1 vs. uniprot
Match: D8LHJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ0_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 3.690e-22
Identity = 42/48 (87.50%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:    1 EMMFEKLGVPAEVMSKDAVLACFSIGRTTASLVDVGGDSTVVTPVYDG 144
            +MMF+K GVPAE MSKDAVLACFSIGRTTASLVDVGGD  VVTPVYDG
Sbjct:    5 DMMFDKFGVPAEFMSKDAVLACFSIGRTTASLVDVGGDIAVVTPVYDG 52
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BLAST of mRNA_E-siliculosus-1a_F_contig1171.1111.1 vs. uniprot
Match: D8LHI8_ECTSI (Protein binding protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHI8_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 2.580e-20
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    1 EMMFEKLGVPAEVMSKDAVLACFSIGRTTASLVDVGGDSTVVTPVYDG 144
            E+MFEK GVPAE MSKDAVLACFSIGRTTASLVDVGGDS VVTPVYDG
Sbjct:  175 EIMFEKFGVPAEFMSKDAVLACFSIGRTTASLVDVGGDSAVVTPVYDG 222
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BLAST of mRNA_E-siliculosus-1a_F_contig1171.1111.1 vs. uniprot
Match: A0A6H5KHN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN4_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.930e-17
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:    1 EMMFEKLGVPAEVMSKDAVLACFSIGRTTASLVDVGGDSTVVTPVYDG 144
            EMMFE+ GVPAE +SKD VL CFSIGRTTASLVDVGGDS V TPV+DG
Sbjct:  231 EMMFEEFGVPAEFVSKDGVLPCFSIGRTTASLVDVGGDSAVATPVFDG 278
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BLAST of mRNA_E-siliculosus-1a_F_contig1171.1111.1 vs. uniprot
Match: D8LHJ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ1_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.470e-13
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 EMMFEKLGVPAEVMSKDAVLACFSIGRTTASLVDVGG 111
            EM+ E+ GVPAE MSKDAVLACFSIGRTTASLVDVGG
Sbjct:    5 EMILEEFGVPAEFMSKDAVLACFSIGRTTASLVDVGG 41
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BLAST of mRNA_E-siliculosus-1a_F_contig1171.1111.1 vs. uniprot
Match: A0A835Z589_9STRA (Actin family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z589_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.230e-10
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 EMMFEKLGVPAEVMSKDAVLACFSIGRTTASLVDVGGDSTVVTPVYDG 144
            E+MFEK  VPA  M +DAVL+CFS+G+TT + VDVGG +TV TPV DG
Sbjct:  110 ELMFEKFDVPALFMGRDAVLSCFSLGKTTGTAVDVGGHTTV-TPVTDG 156
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BLAST of mRNA_E-siliculosus-1a_F_contig1171.1111.1 vs. uniprot
Match: B8CAA7_THAPS (Actin related protein centractin-like protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CAA7_THAPS)

HSP 1 Score: 62.0 bits (149), Expect = 5.520e-10
Identity = 27/48 (56.25%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 EMMFEKLGVPAEVMSKDAVLACFSIGRTTASLVDVGGDSTVVTPVYDG 144
            E++FE   +PA    +DAV AC+++GRTTA++VDVG  ST+VTPVY+G
Sbjct:   73 EILFETHNLPATFFLRDAVAACYAVGRTTATVVDVGYSSTMVTPVYEG 120
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BLAST of mRNA_E-siliculosus-1a_F_contig1171.1111.1 vs. uniprot
Match: A0A7S2Q3G1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q3G1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.810e-9
Identity = 25/48 (52.08%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 EMMFEKLGVPAEVMSKDAVLACFSIGRTTASLVDVGGDSTVVTPVYDG 144
            E+MFE   +P+    +DA+ AC+++GRTTA++VDVG   T+VTPVY+G
Sbjct:  175 EIMFETHNLPSVFFLRDAIAACYAVGRTTATVVDVGYSGTMVTPVYEG 222
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BLAST of mRNA_E-siliculosus-1a_F_contig1171.1111.1 vs. uniprot
Match: A0A1R1X3L6_9FUNG (Actin-like protein 6A n=2 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1X3L6_9FUNG)

HSP 1 Score: 56.2 bits (134), Expect = 6.250e-8
Identity = 25/48 (52.08%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    1 EMMFEKLGVPAEVMSKDAVLACFSIGRTTASLVDVGGDSTVVTPVYDG 144
            E+MFEK  VP   +SK A L+ F  G++TA +VD GG++T   PVYDG
Sbjct:  163 ELMFEKFNVPGFFVSKSAALSAFGTGKSTALVVDSGGETTSAVPVYDG 210
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BLAST of mRNA_E-siliculosus-1a_F_contig1171.1111.1 vs. uniprot
Match: D8R5L0_SELML (Uncharacterized protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R5L0_SELML)

HSP 1 Score: 56.2 bits (134), Expect = 6.480e-8
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    1 EMMFEKLGVPAEVMSKDAVLACFSIGRTTASLVDVGGDSTVVTPVYDG 144
            E+MFEK GVPA  ++K+AVL  F+ GR T+ + D GG ST V  V+DG
Sbjct:  118 ELMFEKYGVPAVFLAKNAVLTSFASGRATSLVADCGGGSTTVAAVHDG 165
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BLAST of mRNA_E-siliculosus-1a_F_contig1171.1111.1 vs. uniprot
Match: A0A1R1Y1G8_9FUNG (Actin-like protein 6A n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1Y1G8_9FUNG)

HSP 1 Score: 55.8 bits (133), Expect = 8.880e-8
Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    1 EMMFEKLGVPAEVMSKDAVLACFSIGRTTASLVDVGGDSTVVTPVYDG 144
            E+MFEK  VP   +SK A L+ F  G++TA ++D GG++T   PVYDG
Sbjct:  172 ELMFEKFNVPGFFVSKSAALSAFGTGKSTALVIDSGGETTSAVPVYDG 219
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1171.1111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHJ0_ECTSI3.690e-2287.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LHI8_ECTSI2.580e-2091.67Protein binding protein, putative n=2 Tax=Ectocarp... [more]
A0A6H5KHN4_9PHAE1.930e-1781.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHJ1_ECTSI1.470e-1386.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z589_9STRA1.230e-1064.58Actin family n=1 Tax=Tribonema minus TaxID=303371 ... [more]
B8CAA7_THAPS5.520e-1056.25Actin related protein centractin-like protein n=1 ... [more]
A0A7S2Q3G1_9STRA3.810e-952.08Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A1R1X3L6_9FUNG6.250e-852.08Actin-like protein 6A n=2 Tax=Smittium culicis Tax... [more]
D8R5L0_SELML6.480e-854.17Uncharacterized protein n=3 Tax=Selaginella moelle... [more]
A0A1R1Y1G8_9FUNG8.880e-850.00Actin-like protein 6A n=1 Tax=Smittium culicis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1171contigE-siliculosus-1a_F_contig1171:210..356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size144
Model size147
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
BRITEko00000,ko00001,ko03019,ko03021,ko03029,ko03036,ko04147,ko04812
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.Z
EggNOG OGsCOG5277@1,KOG0679@2759
EggNOG free text desc.cytoskeleton organization
GOsGO:0000123,GO:0000228,GO:0000278,GO:0000281,GO:0000785,GO:0000790,GO:0000812,GO:0000902,GO:0000904,GO:0000910,GO:0001654,GO:0003407,GO:0003674,GO:0003682,GO:0003712,GO:0003713,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006333,GO:0006337,GO:0006338,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006464,GO:0006473,GO:0006475,GO:0006508,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007049,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007417,GO:0007423,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009653,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016020,GO:0016043,GO:0016070,GO:0016358,GO:0016514,GO:0016569,GO:0016570,GO:0016573,GO:0016579,GO:0016586,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0021510,GO:0022008,GO:0022402,GO:0022411,GO:0022607,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0031011,GO:0031175,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031491,GO:0031493,GO:0031498,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032984,GO:0032986,GO:0032989,GO:0032990,GO:0032991,GO:0033202,GO:0033554,GO:0034508,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034728,GO:0035060,GO:0035267,GO:0036211,GO:0040011,GO:0042221,GO:0042330,GO:0042393,GO:0042766,GO:0043010,GO:0043044,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043486,GO:0043543,GO:0043933,GO:0043967,GO:0043968,GO:0043981,GO:0043982,GO:0043983,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0051301,GO:0051382,GO:0051383,GO:0051716,GO:0060041,GO:0060147,GO:0060148,GO:0060255,GO:0060303,GO:0060964,GO:0060966,GO:0060968,GO:0061640,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070603,GO:0070646,GO:0070647,GO:0070925,GO:0070983,GO:0071564,GO:0071565,GO:0071704,GO:0071824,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097346,GO:0097458,GO:0097485,GO:0097659,GO:0120036,GO:0120039,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902493,GO:1902494,GO:1902562,GO:1902680,GO:1903047,GO:1903506,GO:1903508,GO:1904949,GO:1990234,GO:2000112,GO:2000637,GO:2001141
KEGG Pathwayko04015,ko04145,ko04210,ko04390,ko04391,ko04510,ko04520,ko04530,ko04611,ko04670,ko04714,ko04745,ko04810,ko04919,ko04921,ko05100,ko05110,ko05130,ko05131,ko05132,ko05164,ko05205,ko05225,ko05410,ko05412,ko05414,ko05416,ko05418,map04015,map04145,map04210,map04390,map04391,map04510,map04520,map04530,map04611,map04670,map04714,map04745,map04810,map04919,map04921,map05100,map05110,map05130,map05131,map05132,map05164,map05205,map05225,map05410,map05412,map05414,map05416,map05418
KEGG koko:K05692,ko:K11340,ko:K11400,ko:K11652,ko:K11767
Preferred nameACTL6A
Seed eggNOG ortholog2880.D8LHI8
Seed ortholog evalue6.7e-16
Seed ortholog score89.0
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927692.585424-CDS-E-siliculosus-1a_F_contig1171:209..3531622927692.585424-CDS-E-siliculosus-1a_F_contig1171:209..353Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1171 210..353 -
1696318640.1488044-CDS-E-siliculosus-1a_F_contig1171:209..3531696318640.1488044-CDS-E-siliculosus-1a_F_contig1171:209..353Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1171 210..353 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927692.5961146-UTR-E-siliculosus-1a_F_contig1171:353..3561622927692.5961146-UTR-E-siliculosus-1a_F_contig1171:353..356Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1171 354..356 -
1696318640.1622958-UTR-E-siliculosus-1a_F_contig1171:353..3561696318640.1622958-UTR-E-siliculosus-1a_F_contig1171:353..356Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1171 354..356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1171.1111.1prot_E-siliculosus-1a_F_contig1171.1111.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1171 210..353 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1171.1111.1

>prot_E-siliculosus-1a_F_contig1171.1111.1 ID=prot_E-siliculosus-1a_F_contig1171.1111.1|Name=mRNA_E-siliculosus-1a_F_contig1171.1111.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=48bp
MMFEKLGVPAEVMSKDAVLACFSIGRTTASLVDVGGDSTVVTPVYDG*
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mRNA from alignment at E-siliculosus-1a_F_contig1171:210..356-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1171.1111.1 ID=mRNA_E-siliculosus-1a_F_contig1171.1111.1|Name=mRNA_E-siliculosus-1a_F_contig1171.1111.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=147bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1171:210..356- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAGATGATGTTCGAGAAGTTGGGCGTTCCCGCGGAGGTCATGTCGAAAGA
CGCGGTGCTTGCGTGCTTCTCCATAGGTCGGACGACGGCGTCGCTGGTAG
ACGTGGGGGGGGACAGCACCGTAGTGACACCGGTTTACGACGGGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1171:210..356-

>mRNA_E-siliculosus-1a_F_contig1171.1111.1 ID=mRNA_E-siliculosus-1a_F_contig1171.1111.1|Name=mRNA_E-siliculosus-1a_F_contig1171.1111.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=288bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1171:210..356- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATGTTCGAGAAGTTGGGCGTTCCCGCGGAGGTCATGTCGAAAGACGC
GGTGCTTGCGTGCTTCTCCATAGGTCGGACGACGGCGTCGCTGGTAGACG
TGGGGGGGGACAGCACCGTAGTGACACCGGTTTACGACGGGTGAATGATG
TTCGAGAAGTTGGGCGTTCCCGCGGAGGTCATGTCGAAAGACGCGGTGCT
TGCGTGCTTCTCCATAGGTCGGACGACGGCGTCGCTGGTAGACGTGGGGG
GGGACAGCACCGTAGTGACACCGGTTTACGACGGGTGA
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