mRNA_E-siliculosus-1a_F_contig1168.1092.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1168.1092.1 vs. uniprot
Match: D7FVJ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ6_ECTSI) HSP 1 Score: 609 bits (1571), Expect = 2.470e-218 Identity = 320/364 (87.91%), Postives = 342/364 (93.96%), Query Frame = 1
Query: 1 TLASNSLYAFGFGSMAIGLVVRAGDIGYHDDGPLQVAYILLRPCGMFEVAMIAEYWVESLPSQILTPDSFAGKLRNASETSSLFVVIGVANGGLVSLLGVMTFFARSWPQQAADVFIIGGVLTAELVIFFVASRITAVINQATSIEIGRPGSPSSRAFYFKAKRNLWVQAAALCGVGCFPMLVIAIKRLTMAGRSTPIILETLQILTGHGGAIMFSSATSFDRASRMKRNSAVDNSGVPWSRRISAAQMGVVSAIASEAAPSVMIARIKSMNPKKKGKAKTSDPVQAEQQGEVSEGSRRSCSIGEDAIEVVPFVLRSSGSIGADSFCHHPHPKAARVIPISVPLTAISVSSDETSTSTMTAGRN 1092
++ + LYAFGFG MAIGLV+RAGDIGYHDDGPL+VAYILLRPC MFEVAMIAEYWVESLPSQILTPDSFAGKLRNASETSSLFVVIGVANGGLVSLLGVMTFFARSWPQQAAD+FI+GGVLTAELV+FFVASRITAVINQATS +GRPGSPSSRAFYFKAKRN+W+QAAALCGVGCFPMLVIAIKRLTMAGRSTPII+ETLQILTGHGGAIMFSSATSFDRAS M+RNSAVD S VPW RRIS A+MGVVSA+ASEAAPS MIARIKSM+PKKKGKAKT++ VQAE+QGE+S+GSR SCSIGEDAIEVVPFV RSSGS GA H PHPKAARVIPISVPLTAISVSSDETSTS+MTAGRN
Sbjct: 3 SMVTGCLYAFGFGWMAIGLVIRAGDIGYHDDGPLRVAYILLRPCAMFEVAMIAEYWVESLPSQILTPDSFAGKLRNASETSSLFVVIGVANGGLVSLLGVMTFFARSWPQQAADLFIVGGVLTAELVVFFVASRITAVINQATSTAMGRPGSPSSRAFYFKAKRNMWIQAAALCGVGCFPMLVIAIKRLTMAGRSTPIIIETLQILTGHGGAIMFSSATSFDRASGMRRNSAVDTSRVPWRRRISVARMGVVSAVASEAAPSAMIARIKSMDPKKKGKAKTTELVQAEEQGEISKGSRMSCSIGEDAIEVVPFVQRSSGSFGAVCIHHPPHPKAARVIPISVPLTAISVSSDETSTSSMTAGRN 366
BLAST of mRNA_E-siliculosus-1a_F_contig1168.1092.1 vs. uniprot
Match: A0A6H5KVX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX1_9PHAE) HSP 1 Score: 294 bits (752), Expect = 1.080e-96 Identity = 152/191 (79.58%), Postives = 159/191 (83.25%), Query Frame = 1
Query: 43 MAIGLVVRAGDIGYHDDGPLQVAYILLRPCGMFEVAMIAEYWVESLPSQILTPDSFAGKLRNASETSSLFVVIGVANGGLVSLLGVMTFFARSWPQQAADVFIIGGVLTAELVIFFVASRITAVINQATSIEIGRPGSPSSRAFYFKAKRNLWVQAAALCGVGCFPMLVIAIKRLTMAGRSTPIILETLQI 615
MAIGL VRAGDIGYHDDGPLQVAYILLRPC MFEVAMIAEYWVESLPSQILTPDSFAGKLRNASETSSLFVVIGVANGGLVSLLGVMTFFAR+WPQQAAD+F++GG+LTA GSPSSR FY KAKRNLW+QAAAL GVGCFPMLVIAIK LTMAGRSTPIILETLQ+
Sbjct: 1 MAIGLAVRAGDIGYHDDGPLQVAYILLRPCAMFEVAMIAEYWVESLPSQILTPDSFAGKLRNASETSSLFVVIGVANGGLVSLLGVMTFFARTWPQQAADIFVVGGILTA--------------------------GSPSSRTFYSKAKRNLWIQAAALSGVGCFPMLVIAIKLLTMAGRSTPIILETLQV 165
BLAST of mRNA_E-siliculosus-1a_F_contig1168.1092.1 vs. uniprot
Match: A0A6H5KTI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI4_9PHAE) HSP 1 Score: 207 bits (526), Expect = 5.580e-63 Identity = 120/151 (79.47%), Postives = 131/151 (86.75%), Query Frame = 1
Query: 640 MFSSATSFDRASRMKRNSAVDNSGVPWSRRISAAQMGVVSAIASEAAPSVMIARIKSMNPKKKGKAKTSDPVQAEQQGEVSEGSRRSCSIGEDAIEVVPFVLRSSGSIGADSFCHHPHPKAARVIPISVPLTAISVSSDETSTSTMTAGRN 1092
MFS+ATSFDR S KRNSAVD SGVPWSRRISAAQMGVVSAIASEAAPS MIARIK MNPKK GKA+T++ VQ E++GE S+ S RS SIGEDAIEVV FV RSSGS GAD H PHP+AARV+PISVPLTA+SVSSDETSTS+MTAGRN
Sbjct: 1 MFSAATSFDRGSGTKRNSAVDTSGVPWSRRISAAQMGVVSAIASEAAPSAMIARIKRMNPKK-GKAETTELVQTEEKGETSKDSCRSGSIGEDAIEVVTFVQRSSGSFGADCIRHPPHPRAARVLPISVPLTAVSVSSDETSTSSMTAGRN 150
BLAST of mRNA_E-siliculosus-1a_F_contig1168.1092.1 vs. uniprot
Match: D7FPB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPB4_ECTSI) HSP 1 Score: 160 bits (404), Expect = 6.970e-44 Identity = 86/186 (46.24%), Postives = 115/186 (61.83%), Query Frame = 1
Query: 136 MFEVAMIAEYWVESLPSQILTPDSFAGKLRNASETSSLFVVIGVANGGLVSLLGVMTFFARSWPQQAADVFIIGGVLTAELVIFFVASRITAVINQATSIEIGRPGSPSSRAFYFKAKRNLWVQAAALCGVGCFPMLVIAIKRLTMAGRSTPIILETLQILTGHGGAIMFSSATSFDRASRMKRNS 693
+F VAM+AE+W+ESLP Q+++P SFA L S ++F+V+G+ N G++S LGV T F WP D+ + G +VI FVA RIT+ IN A S + SS FY +AK+NLW QA ALC +GC + IA++ LT GRSTPII+ T Q L GH A++F+S T F A M R S
Sbjct: 2 LFGVAMMAEFWLESLPHQLVSPGSFAEWLTKVSRKHNIFLVVGLLNAGIISTLGVGTLFMTFWPPLLVDLAVASGSAITCIVIIFVAVRITSFINCAMSEH-----AASSNEFYIEAKKNLWKQALALCSIGCAVSVAIAVRHLTQFGRSTPIIVWTAQTLCGHAAALIFTSLTQFQAAPSMSRAS 182
BLAST of mRNA_E-siliculosus-1a_F_contig1168.1092.1 vs. uniprot
Match: A0A6H5KV07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV07_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 9.490e-17 Identity = 40/103 (38.83%), Postives = 62/103 (60.19%), Query Frame = 1
Query: 61 VRAGDIGYHDDGPLQVAYILLRPCGMFEVAMIAEYWVESLPSQILTPDSFAGKLRNASETSSLFVVIGVANGGLVSLLGVMTFFARSWPQQAADVFIIGGVLT 369
+R G G +D+G +QV Y +L PC F + +A +WV LPSQ+L +S+A +L+NASE ++ +V+G N VS G++T + AAD F+ G +T
Sbjct: 1 MREGKTGLYDEGLMQVEYAVLFPCNTFAMMQVASFWVSGLPSQLLPAESYAARLKNASEQRNIILVLGTLNASTVSGSGILTILFPYSAKVAADTFMALGSIT 103 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1168.1092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1168.1092.1 >prot_E-siliculosus-1a_F_contig1168.1092.1 ID=prot_E-siliculosus-1a_F_contig1168.1092.1|Name=mRNA_E-siliculosus-1a_F_contig1168.1092.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=365bp TLASNSLYAFGFGSMAIGLVVRAGDIGYHDDGPLQVAYILLRPCGMFEVAback to top mRNA from alignment at E-siliculosus-1a_F_contig1168:1536..3452+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1168.1092.1 ID=mRNA_E-siliculosus-1a_F_contig1168.1092.1|Name=mRNA_E-siliculosus-1a_F_contig1168.1092.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1917bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1168:1536..3452+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1168:1536..3452+ >mRNA_E-siliculosus-1a_F_contig1168.1092.1 ID=mRNA_E-siliculosus-1a_F_contig1168.1092.1|Name=mRNA_E-siliculosus-1a_F_contig1168.1092.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2190bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1168:1536..3452+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |