mRNA_E-siliculosus-1a_F_contig1167.1084.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1167.1084.1 vs. uniprot
Match: D7G205_ECTSI (HMMR_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G205_ECTSI) HSP 1 Score: 1174 bits (3037), Expect = 0.000e+0 Identity = 931/1080 (86.20%), Postives = 950/1080 (87.96%), Query Frame = 1
Query: 1 MMAVSWAQSKVDRFEEKITGSNLGPGDYDPCLPRSQGMAGAVSLGFTSTKGMTPLDHEQNNPATTEEVLSLPAPTSKQTTTACGFGRPRPALNVGASRLEKVKAEQQEKQLVRLEMEREKLQEEVKTLRSLQGALAKSERHARAESAKVVKRAQAAERKAATVIADAGRLEEAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKDDLRAANDASEARLREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELSALSARLEAELVGRAEELRESEDGNAALRREAAALRGEGEALXXRXXXXXXXXXXXXXXXXGAAQEAEAKAXXLAELEKALSEERAGGAALRXXXXXXXXXXXXXXGVGAXXXXXXEASERGAQRLARELEGAEKGLESARESVACLKGAVTQGAADAESLRQRLGDALAEGVEYADQHTRAEERLRSSEADCAALWEEREEAKARLCAAFVEGRALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARVLKASGADVNAEVSRLRAKLEGKESRLAECTAREEGLREYLASSEGLRGVAKAELAAAQKALNTGAEDFVALERRLCEAEMTCERLRSGVETTELEMSERLAASEAGAASLGESLAEAAEGRGAAAARADRLQAEADGVAEECAALREEGRVAXXXXXEAEAVREGLERTVGELGSEVEGLRAAVVEKEACLEKASVAAEGHRAEAARREAEFVGLRRVLEDVEAGHSSEHGDGSKLGRGLADTHGIGAGLGEKLVSVVEEKKDVQGKLEAAEGALSSSEADRERLKLEVEANESAVEGLRGEIDETRLECEALQKAQCAMSKLEEASAEMTELKASCEGMYRVQTEGGIALREASLANRNVQRLASENAALVGHNNNKQKIKHLQNLKKESIRLQNEKARQASDLALAIAVLEAVGVLPKEAETTSTAVVAKRRGRGLHSRRSSGANSLSPARFKRLEAHGGLGGDGGEGGTQRGRSRVATTTAAATRGRKATVG 3240
MMAVSWAQSKVDRFEEKITGSNLGPGDYDPCLPRSQGMAGAVSLGFTSTKGMT LD EQNNP TTEEVLSLPAPTSKQ TT CGFGRPRPALNVGASRLEKVKAEQQEKQLVRLEMEREKLQ+EVKTLRSLQGALAKSERHARAESAKVVKRAQAAERKAATVIADAGRLEEAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DKD LRAANDASEARL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX L+ALSARLEAELVGR EELRESEDGNAALRREAAAL R XXXXXXXXXXX X AQEAEAKA XL+E +E + GG A+R XXXX XXXXXX ER AQRLAREL GAEKGLESARESVACLKGAVTQGAADAESLRQRLGDALAEGVEYADQHTRAEERLRSSEADCAALWEEREEAKARLCAAFVEGRALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EGKESRLAEC ARE+GL EYLASSEGLRG AKAELAAAQKALNTGAEDFVALERRLCEAEMTCERLRSGVE TELEMSE+LAASE AA+LGESLAEAAEGRGAAAARADRLQ+EADGVA ECAALREEGR XXXXX AVVEKEACLEKASVAA+ HRAEA RREAEFVGLRRVLEDVEAGHS+++G+GSKLGRG A THGIGA LGEKL+SVVEEK+DVQGKLEAAEGALSSSEADRERLKLEVEANESAVEGLRGEIDE+RLECEALQKA+CAMSKLEEASAEMTELKASCEGMYR QTEG ALREA LANRNVQRLASENAALVGHNNNKQKIKHLQNLKKESIRLQNEKARQASDLALAIAVLEAVGVLPKEA TTSTAVVAKRRGRGLHSRRSSGANSLSPARFKRLEAHGGLGGDGGEGGTQRGRSRVATTTAA T GRKATVG
Sbjct: 1 MMAVSWAQSKVDRFEEKITGSNLGPGDYDPCLPRSQGMAGAVSLGFTSTKGMT-LDREQNNPVTTEEVLSLPAPTSKQPTTTCGFGRPRPALNVGASRLEKVKAEQQEKQLVRLEMEREKLQDEVKTLRSLQGALAKSERHARAESAKVVKRAQAAERKAATVIADAGRLEEAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKREEALLRDKDGLRAANDASEARLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTALSARLEAELVGRGEELRESEDGNAALRREAAALXXXXXXXAARAXXXXXXXXXXXRGLXXXAQEAEAKAAXLSE-----AEAKPGGGAVRQKLESTKEILXXXXXXXXXXXXXXXXXERVAQRLARELGGAEKGLESARESVACLKGAVTQGAADAESLRQRLGDALAEGVEYADQHTRAEERLRSSEADCAALWEEREEAKARLCAAFVEGRALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGKESRLAECAAREKGLSEYLASSEGLRGEAKAELAAAQKALNTGAEDFVALERRLCEAEMTCERLRSGVEATELEMSEQLAASEVVAAALGESLAEAAEGRGAAAARADRLQSEADGVARECAALREEGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVEKEACLEKASVAADRHRAEATRREAEFVGLRRVLEDVEAGHSAKNGEGSKLGRGSAGTHGIGAALGEKLISVVEEKRDVQGKLEAAEGALSSSEADRERLKLEVEANESAVEGLRGEIDESRLECEALQKAKCAMSKLEEASAEMTELKASCEGMYRAQTEGSNALREAGLANRNVQRLASENAALVGHNNNKQKIKHLQNLKKESIRLQNEKARQASDLALAIAVLEAVGVLPKEAGTTSTAVVAKRRGRGLHSRRSSGANSLSPARFKRLEAHGGLGGDGGEGGTQRGRSRVATTTAATTHGRKATVG 1074
BLAST of mRNA_E-siliculosus-1a_F_contig1167.1084.1 vs. uniprot
Match: A0A6H5LMH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMH6_9PHAE) HSP 1 Score: 732 bits (1890), Expect = 9.360e-242 Identity = 723/1129 (64.04%), Postives = 747/1129 (66.16%), Query Frame = 1
Query: 4 MAVSWAQSKVDRFEEKITGSNLGPGDYDPCLPRSQGMAGAVSLGFTSTKGMTPLDHEQNNPATTEEVLSLPAPTSKQTTTACGFGRPRPALNVGASRLEKVKAEQQEKQLVRLEMEREKLQEEVKTLRSLQGALAKSERHARAESAKVVKRAQAAERKAATVIADAGRLEEAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKDDLRAANDASEARLREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELSALSARLEAELVGRAEELRESEDGNAALRREAAALRGEGEALXXRXXXXXXXXXXXXXXXXGAAQEAEA----------------------------KAXXLAELEKALSEERAGGAALRXXXXXXXXXXXXXXGVGAXXXXXXEASERGAQRLARELEGAEKGLESARESVACLKGAVTQGAADAESLRQRLGDALAEGVEYADQHTRAEERLRSSEADCAALWEEREEAKARLCAAFVEGRALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA----RVLKASGADVNAEVSRLRAKLEGKESRLAECTAREEGLREYLASSEGLRGVAKAELAAAQKALNTGAEDFVALERRLCEAEMTCERLRSGVETTELEMSERLAASEAGAASLGESLAE---AAEGRGAAAAR-------------------------------------------------------------------------------------ADRLQAEADGVAEECAALREEGRVAXXXXXEAEAVREGLERTVGELGSEVEGLRAAVVEKEACLEKASVAAEGHRAEAARREAEFVGLRRVLEDVEAGHSSEHGDGSKLGRGLADTHGIGAGLGEKLVSVVEEKKDVQGKLEAAEGALSSSEADRE---------------------------------------------------------------RLKLEVEANESAVEGLRGEIDETRLECE-------------------ALQKAQCAMSKLEEASAEMTELKASCEGMYRV 2784
MAVSWAQSKVDRFEEKITGSNLGPGDYDPCLPRSQGMAGAVSLGFTSTKGM PLD EQNNP TTEE LS+PAPTSKQ T+ CGFGRPRPALNVGASRLEKVKAEQQEKQLVRLEMEREKLQ+EVKTLRSLQGALAKSERHARAESAKVVKRAQAAERKAATVIADAGRLEEAE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DDLRAAND SEARLRE XXXXXXXXXXXXXXXXXXXXXXXXXXX EL+ALSARLE ELVGRAEELRESEDGNAALRRE AALRGEGEAL R GAAQE + AELEKAL XXXXXXXXXXXXXX XXXXXX QRLGDALAEGVEYADQHTRAEERLRSSEADCAALWEEREE KARLCAAFVEGRALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A RVLKASGADVNAE+SRLRA+LEGKESRLAEC AREEGLRE LASSEGLRG AK ELAAAQKALNTGAEDFVALERRLCEAEMTCERLRSGVETTELEM E E GA L E AA+GR AAA+ DRLQAEADGVAEECAALREEGR A EAEAVREGLERTVGELGSEVEGLRAAVVEKEACLEKASVAAEGHR FVGLRR DVEA HS+++G+GSKLGRGLADT+GIGA LGEKL+S+VEEKKDVQGKLEAAEGALSSSEADRE RLK E E+ G + + E+ E A +A+CAMSKLEEASAEMTELKA+CEGM R+
Sbjct: 1 MAVSWAQSKVDRFEEKITGSNLGPGDYDPCLPRSQGMAGAVSLGFTSTKGMAPLDREQNNPTTTEENLSVPAPTSKQPTSTCGFGRPRPALNVGASRLEKVKAEQQEKQLVRLEMEREKLQDEVKTLRSLQGALAKSERHARAESAKVVKRAQAAERKAATVIADAGRLEEAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDLRAANDVSEARLREAQAXXXXXXXXXXXXXXXXXXXXXXXXXXXERADELTALSARLEVELVGRAEELRESEDGNAALRREVAALRGEGEALAARAGRLEAELADARRGLEGAAQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSSARAELEKALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRLGDALAEGVEYADQHTRAEERLRSSEADCAALWEEREEVKARLCAAFVEGRALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEKMTNMWVDWFATASSEARVLKASGADVNAEMSRLRAELEGKESRLAECAAREEGLREDLASSEGLRGAAKVELAAAQKALNTGAEDFVALERRLCEAEMTCERLRSGVETTELEMFEARQDLE-GALRTNTELQERIAAADGRLAAASSNLRRXXARLSETSAGXXXXXXXXXXXXXXXXXXXXXXXXYRDRQEEDAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRLQAEADGVAEECAALREEGRAAAARCEEAEAVREGLERTVGELGSEVEGLRAAVVEKEACLEKASVAAEGHRXXXXXXXXXFVGLRRXXXDVEADHSAKNGEGSKLGRGLADTYGIGAALGEKLISLVEEKKDVQGKLEAAEGALSSSEADREXXXXXXXXXXXXXXXXXXXXXXXXXXCEALQKPSWEGSQAKPHAPPSCAAAIVHFSVVSQEVERLK---EGGEAQAAGAKAMLKESHAREEEAVARLQLLETSSARDVALAKYEAECAMSKLEEASAEMTELKANCEGMGRL 1125
BLAST of mRNA_E-siliculosus-1a_F_contig1167.1084.1 vs. uniprot
Match: A0A6H5L3M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3M6_9PHAE) HSP 1 Score: 204 bits (518), Expect = 2.080e-56 Identity = 121/169 (71.60%), Postives = 125/169 (73.96%), Query Frame = 1
Query: 3241 GDIVPATPRSKSQIPRVSLQERLLAALESAELPQIQRRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTPAMLSPTRCSHLSKPVGDVGRGGHAIGGVGVKVTAVAEPSGPGKCDHEGEGYLSNEVIRGDVRRAILADVQLRTEVRKALLDQASG 3747
GDIVPATPRSKSQIPRVSLQERLLAALESAELPQIQRRGG XXXXXX KT +LSPTRCSHLSKPVGDVGRGGHA+G VG KVTAVAEPSGP KC HE YLSNE++RGDVRRAILADVQLRTEVRKALLDQASG
Sbjct: 23 GDIVPATPRSKSQIPRVSLQERLLAALESAELPQIQRRGGEKSSXXXXXXKPCTSSAADKSRPQLQEQQQLQQ--------KTQTVLSPTRCSHLSKPVGDVGRGGHAMGAVGEKVTAVAEPSGPRKCGHERGAYLSNEIVRGDVRRAILADVQLRTEVRKALLDQASG 183 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1167.1084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1167.1084.1 >prot_E-siliculosus-1a_F_contig1167.1084.1 ID=prot_E-siliculosus-1a_F_contig1167.1084.1|Name=mRNA_E-siliculosus-1a_F_contig1167.1084.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1261bp MMAVSWAQSKVDRFEEKITGSNLGPGDYDPCLPRSQGMAGAVSLGFTSTKback to top mRNA from alignment at E-siliculosus-1a_F_contig1167:3422..16757- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1167.1084.1 ID=mRNA_E-siliculosus-1a_F_contig1167.1084.1|Name=mRNA_E-siliculosus-1a_F_contig1167.1084.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=13336bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1167:3422..16757- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1167:3422..16757- >mRNA_E-siliculosus-1a_F_contig1167.1084.1 ID=mRNA_E-siliculosus-1a_F_contig1167.1084.1|Name=mRNA_E-siliculosus-1a_F_contig1167.1084.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=7566bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1167:3422..16757- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |