mRNA_E-siliculosus-1a_F_contig11590.1037.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11590.1037.1
Unique NamemRNA_E-siliculosus-1a_F_contig11590.1037.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11590.1037.1 vs. uniprot
Match: A0A6H5JRR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRR5_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.380e-20
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:    1 SPNGERLLVSDTVAMQMLIFNRSVETGALRLRQRLDLPGSPDNLEI 138
            SPNGERLLVSDTVAMQMLIFNRSVETGALRLRQRLDLPGSPDN+EI
Sbjct:  398 SPNGERLLVSDTVAMQMLIFNRSVETGALRLRQRLDLPGSPDNVEI 443
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BLAST of mRNA_E-siliculosus-1a_F_contig11590.1037.1 vs. uniprot
Match: D8LTG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTG8_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 4.890e-20
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:    1 SPNGERLLVSDTVAMQMLIFNRSVETGALRLRQRLDLPGSPDNLEI 138
            +PNGERLLVSDT AMQMLIFNRSVETGALRLRQRLDLPGSPDNLEI
Sbjct:  445 NPNGERLLVSDTAAMQMLIFNRSVETGALRLRQRLDLPGSPDNLEI 490
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11590.1037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JRR5_9PHAE1.380e-2097.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTG8_ECTSI4.890e-2095.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11590contigE-siliculosus-1a_F_contig11590:1596..1733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size138
Model size138
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927673.0456674-CDS-E-siliculosus-1a_F_contig11590:1595..17331622927673.0456674-CDS-E-siliculosus-1a_F_contig11590:1595..1733Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11590 1596..1733 -
1696318633.9686146-CDS-E-siliculosus-1a_F_contig11590:1595..17331696318633.9686146-CDS-E-siliculosus-1a_F_contig11590:1595..1733Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11590 1596..1733 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11590.1037.1prot_E-siliculosus-1a_F_contig11590.1037.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11590 1596..1733 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11590.1037.1

>prot_E-siliculosus-1a_F_contig11590.1037.1 ID=prot_E-siliculosus-1a_F_contig11590.1037.1|Name=mRNA_E-siliculosus-1a_F_contig11590.1037.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=46bp
SPNGERLLVSDTVAMQMLIFNRSVETGALRLRQRLDLPGSPDNLEI
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mRNA from alignment at E-siliculosus-1a_F_contig11590:1596..1733-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11590.1037.1 ID=mRNA_E-siliculosus-1a_F_contig11590.1037.1|Name=mRNA_E-siliculosus-1a_F_contig11590.1037.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=138bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11590:1596..1733- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGCCCGAACGGAGAACGTCTCCTAGTGTCAGACACGGTGGCGATGCAGAT
GCTCATTTTCAACCGCTCCGTGGAGACGGGAGCGCTCAGACTACGACAGC
GGCTAGACCTCCCTGGGTCTCCGGATAACCTCGAGATC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11590:1596..1733-

>mRNA_E-siliculosus-1a_F_contig11590.1037.1 ID=mRNA_E-siliculosus-1a_F_contig11590.1037.1|Name=mRNA_E-siliculosus-1a_F_contig11590.1037.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=276bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11590:1596..1733- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGCCCGAACGGAGAACGTCTCCTAGTGTCAGACACGGTGGCGATGCAGAT
GCTCATTTTCAACCGCTCCGTGGAGACGGGAGCGCTCAGACTACGACAGC
GGCTAGACCTCCCTGGGTCTCCGGATAACCTCGAGATCAGCCCGAACGGA
GAACGTCTCCTAGTGTCAGACACGGTGGCGATGCAGATGCTCATTTTCAA
CCGCTCCGTGGAGACGGGAGCGCTCAGACTACGACAGCGGCTAGACCTCC
CTGGGTCTCCGGATAACCTCGAGATC
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