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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1156.1013.1 vs. uniprot
Match: D8LKJ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ3_ECTSI) HSP 1 Score: 322 bits (824), Expect = 5.750e-106 Identity = 203/255 (79.61%), Postives = 208/255 (81.57%), Query Frame = 1
Query: 1 QAQELWAKAHRDESAAAAKREIARTTARLRRDAEQHASSVKETLEAAYADRMAAALEKSEESAALLSTAQKKAFRLEATTRRLEAQLAEAAERNRRMEHLSQTQNAAVKGLREDLEKRARRLARRLEEDKASHEKEREAHASELLTVKAQWKEELRTVDERVRSIVGVKDQAIERLTEGLKSSRQRAETAEALLEELQRGICPPFVPGSGSHRQSPNSSRSQHSHHHQDGRYH-------SDSLSRPVHSPEDTR 744
+AQELWAKAHRDESAAAAKREIARTTARLRRD+EQHASSVKETLEAAYADRMAAALEKSEESAALLSTAQKKAFRLEATTRRLEAQLAEAAERNRRMEHLSQTQNAAVK L+EDLEKRARRLARRLEEDKASHEKEREAHASELLTVKAQ AIERLT+GLKSSRQRAETAEALLEELQRGICPPFVPGSGSHR SPN SDS SRPVHSPE+TR
Sbjct: 188 EAQELWAKAHRDESAAAAKREIARTTARLRRDSEQHASSVKETLEAAYADRMAAALEKSEESAALLSTAQKKAFRLEATTRRLEAQLAEAAERNRRMEHLSQTQNAAVKELKEDLEKRARRLARRLEEDKASHEKEREAHASELLTVKAQ---------------------AIERLTDGLKSSRQRAETAEALLEELQRGICPPFVPGSGSHRHSPNXXXXXXXXXXXXXXXXXXXXXXXSDSFSRPVHSPENTR 421
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 1 |
| Cds size | 747 |
| Model size | 747 |
| Exons | 6 |
| Ec32 ortholog | Ec-16_003170.1 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1156.1013.1 >prot_E-siliculosus-1a_F_contig1156.1013.1 ID=prot_E-siliculosus-1a_F_contig1156.1013.1|Name=mRNA_E-siliculosus-1a_F_contig1156.1013.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=249bp
QAQELWAKAHRDESAAAAKREIARTTARLRRDAEQHASSVKETLEAAYAD
RMAAALEKSEESAALLSTAQKKAFRLEATTRRLEAQLAEAAERNRRMEHL
SQTQNAAVKGLREDLEKRARRLARRLEEDKASHEKEREAHASELLTVKAQ
WKEELRTVDERVRSIVGVKDQAIERLTEGLKSSRQRAETAEALLEELQRG
ICPPFVPGSGSHRQSPNSSRSQHSHHHQDGRYHSDSLSRPVHSPEDTR* back to topmRNA from alignment at E-siliculosus-1a_F_contig1156:319..2717+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1156.1013.1 ID=mRNA_E-siliculosus-1a_F_contig1156.1013.1|Name=mRNA_E-siliculosus-1a_F_contig1156.1013.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2399bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1156:319..2717+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGCGCAGGAGCTGTGGGCAAAGGCGCACCGGGATGAGTCGGCGGCGGC
GGCAAAGCGGGAGATTGCCAGGTGGAGAATGGCGTTGTCGAAAGCGGTAC
GGACGCAGACTAGATGTGACCGCAAAAAAAATAGTGAATGAAACGCATGC
AGTTGCTCAGGGGGGTGCCGTTCTACTGTCTGCGTCCTGCGAAGAGCCGT
TGAGAACCTGGTGCCCGGAACACCAATTGCCGGGGTTTCACCCACAAGTC
TTTGGTTTCCGGTGGCTGGAAACATCCGTGTTTCGGCATGTTTCTCGTGC
CTGCTTCAACGACGACGTCCGAACGATTTTTCCCCAAACCGAAAACCTAG
GACGACAGCTCGCCTGCGCCGAGACGCGGAGCAACACGCAAGCAGCGTGA
AAGAAACGCTCGAGGCGGCGTATGCTGATCGAATGGCCGCTGCGCTGGAG
AAGAGCGAGGAATCCGCCGCGTTGTTATCCACCGCTCAAAAAAAGGCATT
TCGATTGGGTGAGAAGCAGCAGCACCTAAGCCCTCCTCGTTAAATGATTT
ACCTGTCACTAGAGACGCTCCACGTGTGTTTTTTTGGGGGGGGCGCATGG
ATCGAACCTGCTTACATACCACCGTACAAAATGGGGTTGCAGTCCGTGGT
ATCCGGTGAATACAACGCTCGGGGCACGCCACGCTTGGGGGGGTGGAAAA
AAGTACACAACGGTGTATCGTTGTCTCGACACACACGCGATCTCGCCTGC
TGTAAACGCGCAGAGGCTACGACCCGTCGCTTGGAGGCTCAGCTAGCGGA
AGCGGCGGAGCGAAACCGGAGGATGGAACATCTGTCGCAGGTGAATACGC
GCAAAGGACTCTTGCAGGAGGACATTCGTATGAATTATCATAAACACTAT
CTGCGACACGTGAAACACTATCTGCGACACGTGGGCATCGCTGTCACCTC
TGCACCACTCCGGGCGCCCCCGATGCCATTAAAACGTTAGGACGAGGTAC
GAAACAGACCGATGCTTGTATCATGCTCCACATTCGAATGACCTTTGGCA
CTCCAGTCTCTGCTTGCTGCTTCTCTGGAAAGCTGGTTGAACAGGCAACG
GTCATCCTTCACGGTACGCATGTTCGTGCAGATGGTCTTCTCCCGTTCCT
TTCACAACGATCACGATCACAGACAAACTCTGCGCCTGGGTGTCAGGCTT
CGACTCTTTCTTTGTGGCGTCGTGCCACCGCCCCGCGCACATAATGACGA
ATTCCATGCAGACCCAGAACGCGGCTGTGAAAGGGCTGAGGGAAGATCTG
GAGAAGCGAGCCCGGCGATTGGCCCGCCGCCTAGAAGAAGACAAAGCCTC
GCACGAAAAGGAGAGAGAAGCTCACGCGTCGGAGCTGCTCACGGTCAAGG
CGCAGGTGTATCCTGCTACCACACGGTGTAGCAGTTCGATGTTAATGCTA
CTGGTCGACTGAATCGCTCGATCAATGGGGAGAGCACGTTACACTGCAAA
CAGCGTGCGTGGTTCACACCCACACGATGCTTTGTTTTGAGCCTGCGTCA
TGTGGTTGTATAGTAACTGGTGCGTGTTCTTCCGTGTACTTCAAGGTAGG
GTGTAAGACGAAGAAGCGCGCTTGACAACCGCGGCCTAGACTTGCTTGCG
TCGGTCCAGCAACATTCTTCGAGCCGATGTTGCTACGATACACGATACTT
GGGATGCGGCTTTCGATTGACGCCGACGGATCGCTGTCCGTTCCTTCATC
TCGATTTCGTTTCGTGCGGTTCAGTGGAAGGAGGAGCTCCGGACGGTAGA
TGAGCGCGTACGATCAATCGTCGGCGTCAAAGACCAGGTGCGTATGGTAC
ATACTTGTTCAGAACGCGAATCACAAATGCAAGGAGGATGTGTTTTGCTT
TTGTTCAGAGGAGGTGTATGTTCGTCAGCGTGATATGTTCCACGTTAATT
TCGGTGGTAAGAACGTGCTCCTCCTGTGTTCAAGTCATGTAGTGTAGCAC
CCAAAGCTTCAAAGGACGGAACGCACCAATAACACATCGAAACCGTGCTA
CATGTCTCAACATTGAGGAACGGGCGACACCGAAAGCTCTGAGGACGAAC
TTTTCCTGTGGAACTGTTCTTTCCACACTCCAACTGTTTTCACACACATG
CAAAACATCGATCAGGCGATCGAGCGGCTGACAGAGGGACTGAAAAGTTC
CAGGCAGAGAGCGGAGACGGCGGAAGCCCTTCTCGAGGAGCTTCAGAGAG
GAATCTGCCCTCCCTTTGTACCAGGGTCAGGATCACATCGACAGTCCCCA
AATAGCAGTAGAAGCCAGCACAGCCATCATCACCAAGACGGGCGGTACCA
TTCAGATTCTCTTTCTCGCCCCGTCCACTCTCCGGAAGACACCCGCTGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1156:319..2717+ >mRNA_E-siliculosus-1a_F_contig1156.1013.1 ID=mRNA_E-siliculosus-1a_F_contig1156.1013.1|Name=mRNA_E-siliculosus-1a_F_contig1156.1013.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1494bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1156:319..2717+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGCGCAGGAGCTGTGGGCAAAGGCGCACCGGGATGAGTCGGCGGCGGC
GGCAAAGCGGGAGATTGCCAGCAGGCGCAGGAGCTGTGGGCAAAGGCGCA
CCGGGATGAGTCGGCGGCGGCGGCAAAGCGGGAGATTGCCAGGACGACAG
CTCGCCTGCGCCGAGACGCGGAGCAACACGCAAGCAGCGTGAAAGAAACG
CTCGAGGCGGCGTATGCTGATCGAATGGCCGCTGCGCTGGAGAAGAGCGA
GGAATCCGCCGCGTTGTTATCCACCGCTCAAAAAAAGGCATTTCGATTGG
GACGACAGCTCGCCTGCGCCGAGACGCGGAGCAACACGCAAGCAGCGTGA
AAGAAACGCTCGAGGCGGCGTATGCTGATCGAATGGCCGCTGCGCTGGAG
AAGAGCGAGGAATCCGCCGCGTTGTTATCCACCGCTCAAAAAAAGGCATT
TCGATTGGAGGCTACGACCCGTCGCTTGGAGGCTCAGCTAGCGGAAGCGG
CGGAGCGAAACCGGAGGATGGAACATCTGTCGCAGAGGCTACGACCCGTC
GCTTGGAGGCTCAGCTAGCGGAAGCGGCGGAGCGAAACCGGAGGATGGAA
CATCTGTCGCAGACCCAGAACGCGGCTGTGAAAGGGCTGAGGGAAGATCT
GGAGAAGCGAGCCCGGCGATTGGCCCGCCGCCTAGAAGAAGACAAAGCCT
CGCACGAAAAGGAGAGAGAAGCTCACGCGTCGGAGCTGCTCACGGTCAAG
GCGCAGACCCAGAACGCGGCTGTGAAAGGGCTGAGGGAAGATCTGGAGAA
GCGAGCCCGGCGATTGGCCCGCCGCCTAGAAGAAGACAAAGCCTCGCACG
AAAAGGAGAGAGAAGCTCACGCGTCGGAGCTGCTCACGGTCAAGGCGCAG
TGGAAGGAGGAGCTCCGGACGGTAGATGAGCGCGTACGATCAATCGTCGG
CGTCAAAGACCAGTGGAAGGAGGAGCTCCGGACGGTAGATGAGCGCGTAC
GATCAATCGTCGGCGTCAAAGACCAGGCGATCGAGCGGCTGACAGAGGGA
CTGAAAAGTTCCAGGCAGAGAGCGGAGACGGCGGAAGCCCTTCTCGAGGA
GCTTCAGAGAGGAATCTGCCCTCCCTTTGTACCAGGGTCAGGATCACATC
GACAGTCCCCAAATAGCAGTAGAAGCCAGCACAGCCATCATCACCAAGAC
GGGCGGTACCATTCAGATTCTCTTTCTCGCCCCGTCCACTCTCCGGAAGA
CACCCGCTGAGCGATCGAGCGGCTGACAGAGGGACTGAAAAGTTCCAGGC
AGAGAGCGGAGACGGCGGAAGCCCTTCTCGAGGAGCTTCAGAGAGGAATC
TGCCCTCCCTTTGTACCAGGGTCAGGATCACATCGACAGTCCCCAAATAG
CAGTAGAAGCCAGCACAGCCATCATCACCAAGACGGGCGGTACCATTCAG
ATTCTCTTTCTCGCCCCGTCCACTCTCCGGAAGACACCCGCTGA back to top
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