mRNA_E-siliculosus-1a_F_contig1154.1003.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1154.1003.1
Unique NamemRNA_E-siliculosus-1a_F_contig1154.1003.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1154.1003.1 vs. uniprot
Match: A0A6H5JEW8_9PHAE (53EXOc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEW8_9PHAE)

HSP 1 Score: 515 bits (1326), Expect = 4.620e-175
Identity = 265/287 (92.33%), Postives = 269/287 (93.73%), Query Frame = 1 
Query:  376 MADAPPLTHDQLPEESIYLLDGTSMLFRAFYGRGAGGYLASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFEMEGYEADDVMATLARQDARAGAWLGWWGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRRDGYTILGSEEVLAKFGVKPSALPDLFGLVGDVADNIPGVKGIGQKGGSRLLENFETLEGVFAGLDGVGSMGIRGSKGLQALLSQPGIQEEAMLYREIATLDDEVPLEG 1236
            MAD PPLTHDQLPEESIYLLDGTSMLFRAFYGRGAGGYLASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFEMEGYEADDVMATLAR           WGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRRDGYTILGS+EVLAKFGV+PSALPDLFGL+GDVADNIPGVKGIG KGGSRLLE FETLEGVFAGLDGVGSMGIRGSKGLQ LLSQPGIQEEAMLYREIATLDDE  + G
Sbjct:    1 MADPPPLTHDQLPEESIYLLDGTSMLFRAFYGRGAGGYLASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFEMEGYEADDVMATLAR-----------WGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRRDGYTILGSDEVLAKFGVQPSALPDLFGLIGDVADNIPGVKGIGPKGGSRLLEKFETLEGVFAGLDGVGSMGIRGSKGLQTLLSQPGIQEEAMLYREIATLDDEGSVSG 276
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1154.1003.1 vs. uniprot
Match: A0A835ZC56_9STRA (5'-3' exonuclease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC56_9STRA)

HSP 1 Score: 213 bits (542), Expect = 6.440e-60
Identity = 111/185 (60.00%), Postives = 133/185 (71.89%), Query Frame = 1 
Query:  358 VGARPAMADAPPLTHDQLPEESIYLLDGTSMLFRAFYGRGAGGYLASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFEMEGYEADDVMATLARQDARAGAWLGWWGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRR 912
            V A PA        H  +P+E++++LDGTSMLFRA +G+G+  YLA++GATEV AVLAMGIE AQFI EV+PRY+A+AFDV R +TFRR+L P YKA R P P DL LQ+PLA AL++ LGC      GYEADDVMATLA            WGRS+GL VV+ S DKDM QLVR+RVHVM PRR
Sbjct:   43 VAAAPAAGGITEFKHTDVPDETLWVLDGTSMLFRAHFGKGSQSYLAADGATEVAAVLAMGIELAQFIEEVQPRYLAVAFDVDRNSTFRRQLMPTYKAHRPPHPRDLLLQLPLATALTKCLGCTCLSQRGYEADDVMATLAT-----------WGRSIGLSVVLVSEDKDMLQLVRERVHVMAPRR 216
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1154.1003.1 vs. uniprot
Match: A0A7V4PPR6_9DELT (53EXOc domain-containing protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V4PPR6_9DELT)

HSP 1 Score: 175 bits (443), Expect = 1.180e-45
Identity = 113/289 (39.10%), Postives = 167/289 (57.79%), Query Frame = 1 
Query:  370 PAMADAPPLTHDQLPEESIYLLDGTSMLFRAFYGRGAGGYLASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFEMEGYEADDVMATLARQDARAGAWLGWWGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRRDGYTILGSEEVLAKFGVKPSALPDLFGLVGDVADNIPGVKGIGQKGGSRLLENFETLEGVFAGLDGVGSMGIRGSKGLQ-ALLSQPGIQEEAMLYREIATLDDEVPLE 1233
            PAMA++P           +YL+DG+S +FRAF+   A   L+S+      A+        + +   +P Y+A+A D GR+T FR ++Y  YK  R   P  L  Q P  + + EAL     E EGYEADD++ATLARQ A          R+V   VV+ S DKD+ QLV D + ++   +D +  +G +EV  KFGV+P  + ++ GL+GD +DNIPGVKGIG+K  S L++ F TLE +F  LD +   G++G + ++ ALL+    +E A L R +AT+  +VP+E
Sbjct:   10 PAMAESP----------CVYLVDGSSYIFRAFFALPA---LSSSTGLPTNAIYGFTNMMLRLLKTYRPEYLAVALDAGRKT-FRNEIYQDYKGNRPEAPPALIPQFPYIRKVLEALRVAQVEREGYEADDLIATLARQFA---------ARAVQ--VVIVSGDKDLMQLVGDGIRLLDTAKDKW--IGPDEVREKFGVEPDKVIEVIGLMGDASDNIPGVKGIGEKSASGLIQRFRTLEYLFEHLDDLKQTGLKGVERVRKALLTG---RESAFLSRTLATVKSDVPIE 268
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1154.1003.1 vs. uniprot
Match: A0A1F9K7W9_9DELT (53EXOc domain-containing protein n=1 Tax=Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_57_22 TaxID=1797892 RepID=A0A1F9K7W9_9DELT)

HSP 1 Score: 174 bits (442), Expect = 3.330e-45
Identity = 100/274 (36.50%), Postives = 160/274 (58.39%), Query Frame = 1 
Query:  412 PEESIYLLDGTSMLFRAFYGRGAGGYLASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFEMEGYEADDVMATLARQDARAGAWLGWWGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRRDGYTILGSEEVLAKFGVKPSALPDLFGLVGDVADNIPGVKGIGQKGGSRLLENFETLEGVFAGLDGVGSMGIRGSKGLQALLSQPGIQEEAMLYREIATLDDEVPLE 1233
            P   +YL+DG+S +FRAF+       L ++      A+L       +F+   KP Y+A+A D G+ET FR ++Y  YK  R   P  L  Q P  + + +A+     E+EG+EADD++ATLA+  +             GL VV+ S DKD+ QLV ++V ++   ++ +  + +  V  KFGV P  + ++ GL+GD  DNIPGVKGIG+K  S L++ +E+LE +FA LD V    ++G++ ++  L+    +EEA+L RE+AT+  +VP++
Sbjct:    4 PPPCVYLVDGSSYIFRAFFALPP---LTNSAGLPTQAILGFTTMTLKFLKTYKPEYLAVALDAGKET-FRNQIYQAYKGNRPEAPPQLIPQFPYIRKVLKAMSVVVLELEGFEADDIIATLAKDFSAR-----------GLSVVIVSGDKDLMQLVGEKVKLLDTAKEKW--IDAAAVKEKFGVAPEKVTEVMGLMGDAIDNIPGVKGIGEKTASALIQRYESLENLFAHLDDVEKSDLKGARRIRNALADR--KEEALLSRELATVRTDVPIQ 258
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1154.1003.1 vs. uniprot
Match: A0A2D5BSF5_9BACT (Exodeoxyribonuclease IX n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5BSF5_9BACT)

HSP 1 Score: 174 bits (440), Expect = 4.880e-45
Identity = 115/302 (38.08%), Postives = 164/302 (54.30%), Query Frame = 1 
Query:  424 IYLLDGTSMLFRAFYGRGAGGYLASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFEMEGYEADDVMATLARQDARAGAWLGWWGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRRDGYTILGSEEVLAKFGVKPSALPDLFGLVGDVADNIPGVKGIGQKGGSRLLENFETLEGVFAGLDGVGSMGIRGSKGLQALLSQPGIQEEAMLYREIATLDDEVPLEGIDAITSSTFLYRGASPEAEGVMSALGFHAPL 1329
            +++LDGT+ LFRA++        A +G  EVGAV   G    + +   +P ++A+ FD G   TFR +++P YKA R   P DL  Q  LA  L  ALG  +F  +GYEADD+MATLAR+   A           GL   + + DKD+ QLV D V V+ P+      +    V  +FGV+ S L D   L GD  DN+PGVKG+G K    L+  F +++G++  LD V ++ +RG+KGL   L +   +EEA L R +  LD+E P+E  +  T      RG    A+   S +GF +PL
Sbjct:    6 LHVLDGTAALFRAWFS--VNERPAPDGV-EVGAVWGFGQWLGKVVRRTRPTHLAVVFDAGM-WTFRNEIWPDYKANRGEPPDDLVPQFDLAYDLCVALGFPSFRTDGYEADDLMATLARRAVGA-----------GLEAALVTPDKDVLQLVSDAVCVLDPKE--LDAIDGPMVKERFGVEASQLVDYLALAGDPTDNVPGVKGVGPKTAQALIAAFGSVDGLYEDLDRVATLDVRGAKGLGDKLREH--EEEARLSRRLVVLDEEAPMEP-EIRTLGDLRLRGTPDGADRFFSRVGFPSPL 287
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1154.1003.1 vs. uniprot
Match: A0A353MEJ4_9DELT (Ribonuclease H n=2 Tax=Geobacteraceae TaxID=213422 RepID=A0A353MEJ4_9DELT)

HSP 1 Score: 179 bits (454), Expect = 6.410e-45
Identity = 109/270 (40.37%), Postives = 154/270 (57.04%), Query Frame = 1 
Query:  424 IYLLDGTSMLFRAFYGRGAGGYLASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFEMEGYEADDVMATLARQDARAGAWLGWWGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRRDGYTILGSEEVLAKFGVKPSALPDLFGLVGDVADNIPGVKGIGQKGGSRLLENFETLEGVFAGLDGVGSMGIRGSKGLQALLSQPGIQEEAMLYREIATLDDEVPLE 1233
            +YLLDG+S ++RA+YG       A++G     AVL       + + E +P Y A+ FD  RE TFRR +YP YKA R+ VP DL LQ+P  + + +AL     E  G+EADDV+ATLAR+ A A           G+ V V + DKD+ Q+V DR+ ++   +   +  G +EVL +FGV P  + D+ GL GD ADNIPGV GIG+K  + L++ F +LEGV   +  V     R S  L A        ++A L + +AT+  +VPLE
Sbjct:    7 LYLLDGSSYIYRAYYGFRES---ATSGGMPTNAVLGFTRMLLELVQEHRPEYFAVVFDPPREETFRRDIYPAYKAHREAVPEDLLLQLPYIRRILQALNVPALEAPGFEADDVIATLAREYAAA-----------GIEVTVVTGDKDLLQIVSDRIALLDTMKGKRS--GPQEVLDRFGVAPELVADVLGLAGDSADNIPGVPGIGEKTAAMLVQRFGSLEGVLQWITLVNGKSRRESLHLHA--------DQARLSKRLATVRYDVPLE 252
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1154.1003.1 vs. uniprot
Match: A0A3N9VXZ7_9DELT (Ribonuclease H n=1 Tax=Geobacter sp. TaxID=46610 RepID=A0A3N9VXZ7_9DELT)

HSP 1 Score: 179 bits (453), Expect = 7.900e-45
Identity = 109/269 (40.52%), Postives = 159/269 (59.11%), Query Frame = 1 
Query:  424 IYLLDGTSMLFRAFYGRGAGGYLASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFEMEGYEADDVMATLARQDARAGAWLGWWGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRRDGYTILGSEEVLAKFGVKPSALPDLFGLVGDVADNIPGVKGIGQKGGSRLLENFETLEGVFAGLDGVGSMGIRGSKGLQALLSQPGIQEEAMLYREIATLDDEVPL 1230
            ++LLDG+S ++RA+YG      LA++G     AV          + E  P Y+A+ FD  RE TFRR+LYP+YKA R  +P DL LQ+P  + + +AL     E  G+EADDV+A+LAR+ A           + GL V V + DKD+ Q+V +R+ ++   +D  +  G  EVL +FGV P  +PD+ GL GD ADNIPGV GIG+K  ++L++ F +LEGVF   D V      G K  ++L S    Q++A+L + +AT+  +V L
Sbjct:    7 LFLLDGSSYIYRAYYGVRD---LATSGGMPTNAVFGFTRMLLCLLQEHSPEYLAVVFDRPREETFRRELYPEYKANRDAMPEDLVLQVPYIRKVLQALNIPALEAPGFEADDVIASLARRSA-----------AEGLRVTVVTGDKDLMQIVGERICLLDTMKDCCS--GPLEVLERFGVPPELVPDVLGLAGDTADNIPGVPGIGEKTAAKLVKQFGSLEGVFRWKDLV-----NGKKRRESLQSY---QDQALLSKTLATVRYDVDL 251
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1154.1003.1 vs. uniprot
Match: A0A533SDF6_9BACT (Ribonuclease H n=1 Tax=bacterium TaxID=1869227 RepID=A0A533SDF6_9BACT)

HSP 1 Score: 176 bits (445), Expect = 9.290e-44
Identity = 107/269 (39.78%), Postives = 155/269 (57.62%), Query Frame = 1 
Query:  424 IYLLDGTSMLFRAFYGRGAGGYLASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFEMEGYEADDVMATLARQDARAGAWLGWWGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRRDGYTILGSEEVLAKFGVKPSALPDLFGLVGDVADNIPGVKGIGQKGGSRLLENFETLEGVFAGLDGVGSMGIRGSKGLQALLSQPGIQEEAMLYREIATLDDEVPL 1230
            +YLLDG+S ++RAFYG      LA++G     AV          + E  P Y+A+ FD  R+ TFRR++YP+YKA R  +P DL  QIP  + + EAL   T E  G+EADDV+ATLAR+ A             G+ V V + DKD+ Q+V D++ ++   +D  +  G +EVL +FGV P  +PD+ GL GD +DNIPGV GIG+K  ++L++ F +LEGV      V     R  + L A       Q++A+L + +AT+  +V L
Sbjct:    7 LYLLDGSSYIYRAFYGVRD---LATSGGMPTNAVFGFTRMLLGLLQEHTPEYLAVVFDRPRDETFRREIYPEYKANRDAMPEDLVPQIPYIRKVLEALNIPTLEAPGFEADDVIATLARRTAEE-----------GIRVTVVTGDKDLMQIVNDKICLLDTMKDSCS--GPQEVLERFGVPPERVPDVLGLSGDTSDNIPGVPGIGEKTAAKLVKQFGSLEGVLRWRSLVNGKKCR--ENLHAY------QDQALLSKTLATVRYDVDL 251
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1154.1003.1 vs. uniprot
Match: A0A1G2W2X7_9DELT (Ribonuclease H n=1 Tax=Desulfuromonadaceae bacterium GWC2_58_13 TaxID=1801896 RepID=A0A1G2W2X7_9DELT)

HSP 1 Score: 174 bits (442), Expect = 2.470e-43
Identity = 109/269 (40.52%), Postives = 154/269 (57.25%), Query Frame = 1 
Query:  424 IYLLDGTSMLFRAFYGRGAGGYLASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFEMEGYEADDVMATLARQDARAGAWLGWWGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRRDGYTILGSEEVLAKFGVKPSALPDLFGLVGDVADNIPGVKGIGQKGGSRLLENFETLEGVFAGLDGVGSMGIRGSKGLQALLSQPGIQEEAMLYREIATLDDEVPL 1230
            +YLLDG+S ++RA+YG      LA+ G   V AV          + E +P Y+A+ FD  RE TFRRK+YP YKA R  +P DL  QIP  K + +AL     E  G+EADDV+ATLAR+ A           + G+ V V + DKD+ Q+V DR+ ++   +D  +  G  EV  +FGV P  +PD+ GL GD +DNIPGV G+G+K  S L++ F +LEGVF     V      G K  + LL+    +++A L + +AT+  +V L
Sbjct:    7 LYLLDGSSYIYRAYYGFRD---LATAGGMPVNAVFGFTRMLLGLLQETRPDYLAVVFDRPREETFRRKIYPGYKAHRDAMPEDLVPQIPYIKRIVQALNIPALEAPGFEADDVIATLARRYA-----------ADGIEVTVVTGDKDLMQIVGDRIGLLDTMKDKRS--GPREVCDRFGVPPELVPDVLGLAGDASDNIPGVPGLGEKTASELVQRFGSLEGVFEWKSLVS-----GKKRRENLLAH---EDQARLSKILATVRYDVDL 251
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1154.1003.1 vs. uniprot
Match: A0A523CZM5_9BACT (53EXOc domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A523CZM5_9BACT)

HSP 1 Score: 172 bits (435), Expect = 2.910e-43
Identity = 124/363 (34.16%), Postives = 170/363 (46.83%), Query Frame = 1 
Query:  424 IYLLDGTSMLFRAFYGRGAGGYLASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDVGRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFEMEGYEADDVMATLARQDARAGAWLGWWGRSVGLGVVVCSSDKDMCQLVRDRVHVMQPRRDGYTILGSEEVLAKFGVKPSALPDLFGLVGDVADNIPGVKGIGQKGGSRLLENFETLEGVFAGLDGVGSMGIRGSKGLQALLSQPGIQEEAMLYREIATLDDEVPLEGIDAITSSTFLYRGASPEAEGVMSALGFHAPLRMIQEGSKRPSARASTV*GCYVWA--AVGYEQAEHNDVVSWETA*SVQSLPGGGW--CPGN 1500
            +YL+DGTS L+RAF+   AG  L +       A+        + + E +P Y+A+AFD   E TFR K Y QYKAQR   P DL  Q P A  +  ALG    E  GYEADD++ TLA Q            R  G  VVV +SDKD+ QLV D + VM P ++   IL + +V   FGV+P  + D+  L GD +DN+PGV GIG+KG  +++ +F  LE   AG + +     R     + LL++    ++A   RE+ TLD +VPL+            R + P+           A  R  +     P  R  T     +W   A G       DV  W     +      GW  CP  
Sbjct:   14 VYLVDGTSTLYRAFFAIRAG--LTNKDGMPTNALYGFTNMLRKLLKEEQPEYLAVAFD-RPEPTFRHKKYEQYKAQRPDTPPDLIAQAPWALKICRALGLMALEKPGYEADDILGTLAVQC-----------RDAGFDVVVVASDKDLLQLVGDGIVVMNPNKE--LILDAHKVEEVFGVRPDQVVDVLALWGDASDNVPGVTGIGEKGAKQIIRDFGDLEAAIAGAEEIKRKSYR-----ENLLAEA---DQARFSRELVTLDTDVPLD------LEPEALRRSDPDGGRPWPCSRTWASARCWRSSCPSPRRRTRTTSPSSIWTSCAGGRSSCAPPDVSLWTPRARLWIRCAAGWWGCPSR 346
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1154.1003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEW8_9PHAE4.620e-17592.3353EXOc domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835ZC56_9STRA6.440e-6060.005'-3' exonuclease n=1 Tax=Tribonema minus TaxID=30... [more]
A0A7V4PPR6_9DELT1.180e-4539.1053EXOc domain-containing protein (Fragment) n=1 Ta... [more]
A0A1F9K7W9_9DELT3.330e-4536.5053EXOc domain-containing protein n=1 Tax=Deltaprot... [more]
A0A2D5BSF5_9BACT4.880e-4538.08Exodeoxyribonuclease IX n=1 Tax=Planctomycetes bac... [more]
A0A353MEJ4_9DELT6.410e-4540.37Ribonuclease H n=2 Tax=Geobacteraceae TaxID=213422... [more]
A0A3N9VXZ7_9DELT7.900e-4540.52Ribonuclease H n=1 Tax=Geobacter sp. TaxID=46610 R... [more]
A0A533SDF6_9BACT9.290e-4439.78Ribonuclease H n=1 Tax=bacterium TaxID=1869227 Rep... [more]
A0A1G2W2X7_9DELT2.470e-4340.52Ribonuclease H n=1 Tax=Desulfuromonadaceae bacteri... [more]
A0A523CZM5_9BACT2.910e-4334.1653EXOc domain-containing protein n=1 Tax=Acidobact... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1154contigE-siliculosus-1a_F_contig1154:859..8072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1383
Model size2581
Exons9
Hectar predicted targeting categorysignal peptide
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Best eggNOG OGNA|NA|NA
Best tax levelAquificae
COG Functional cat.L
EC2.7.7.7,3.1.26.4
EggNOG OGs2G3XK@200783,COG0258@1,COG0258@2,COG0749@1,COG0749@2
EggNOG free text desc.5'-3' exonuclease
GOsGO:0000287,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004519,GO:0004520,GO:0004527,GO:0004536,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006284,GO:0006308,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008408,GO:0008409,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016888,GO:0016893,GO:0017108,GO:0018130,GO:0019438,GO:0019439,GO:0022616,GO:0030312,GO:0030955,GO:0031420,GO:0033554,GO:0033567,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040007,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0046872,GO:0048256,GO:0050896,GO:0051716,GO:0071704,GO:0071897,GO:0071944,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440
KEGG ReactionR00375,R00376,R00377,R00378
KEGG koko:K01146,ko:K02335,ko:K03469
KEGG rclassRC02795
Preferred namepolA
Seed eggNOG ortholog1158318.ATXC01000001_gene1026
Seed ortholog evalue2.3e-41
Seed ortholog score176.8
Taxonomic scopeBacteria
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1154.1003.1prot_E-siliculosus-1a_F_contig1154.1003.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1154 859..6874 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927668.4298701-CDS-E-siliculosus-1a_F_contig1154:858..13431622927668.4298701-CDS-E-siliculosus-1a_F_contig1154:858..1343Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1154 859..1343 +
1696318631.9327638-CDS-E-siliculosus-1a_F_contig1154:858..13431696318631.9327638-CDS-E-siliculosus-1a_F_contig1154:858..1343Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1154 859..1343 +
1622927668.4439433-CDS-E-siliculosus-1a_F_contig1154:1826..19051622927668.4439433-CDS-E-siliculosus-1a_F_contig1154:1826..1905Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1154 1827..1905 +
1696318631.9427896-CDS-E-siliculosus-1a_F_contig1154:1826..19051696318631.9427896-CDS-E-siliculosus-1a_F_contig1154:1826..1905Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1154 1827..1905 +
1622927668.461692-CDS-E-siliculosus-1a_F_contig1154:2649..27691622927668.461692-CDS-E-siliculosus-1a_F_contig1154:2649..2769Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1154 2650..2769 +
1696318631.9505532-CDS-E-siliculosus-1a_F_contig1154:2649..27691696318631.9505532-CDS-E-siliculosus-1a_F_contig1154:2649..2769Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1154 2650..2769 +
1622927668.4733562-CDS-E-siliculosus-1a_F_contig1154:3096..32241622927668.4733562-CDS-E-siliculosus-1a_F_contig1154:3096..3224Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1154 3097..3224 +
1696318631.9660664-CDS-E-siliculosus-1a_F_contig1154:3096..32241696318631.9660664-CDS-E-siliculosus-1a_F_contig1154:3096..3224Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1154 3097..3224 +
1622927668.4847333-CDS-E-siliculosus-1a_F_contig1154:3579..36781622927668.4847333-CDS-E-siliculosus-1a_F_contig1154:3579..3678Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1154 3580..3678 +
1696318631.9818304-CDS-E-siliculosus-1a_F_contig1154:3579..36781696318631.9818304-CDS-E-siliculosus-1a_F_contig1154:3579..3678Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1154 3580..3678 +
1622927668.496886-CDS-E-siliculosus-1a_F_contig1154:4473..45861622927668.496886-CDS-E-siliculosus-1a_F_contig1154:4473..4586Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1154 4474..4586 +
1696318631.9910805-CDS-E-siliculosus-1a_F_contig1154:4473..45861696318631.9910805-CDS-E-siliculosus-1a_F_contig1154:4473..4586Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1154 4474..4586 +
1622927668.5084207-CDS-E-siliculosus-1a_F_contig1154:5136..52721622927668.5084207-CDS-E-siliculosus-1a_F_contig1154:5136..5272Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1154 5137..5272 +
1696318632.0014322-CDS-E-siliculosus-1a_F_contig1154:5136..52721696318632.0014322-CDS-E-siliculosus-1a_F_contig1154:5136..5272Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1154 5137..5272 +
1622927668.522511-CDS-E-siliculosus-1a_F_contig1154:5885..59461622927668.522511-CDS-E-siliculosus-1a_F_contig1154:5885..5946Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1154 5886..5946 +
1696318632.010854-CDS-E-siliculosus-1a_F_contig1154:5885..59461696318632.010854-CDS-E-siliculosus-1a_F_contig1154:5885..5946Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1154 5886..5946 +
1622927668.5367894-CDS-E-siliculosus-1a_F_contig1154:6712..68741622927668.5367894-CDS-E-siliculosus-1a_F_contig1154:6712..6874Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1154 6713..6874 +
1696318632.0205843-CDS-E-siliculosus-1a_F_contig1154:6712..68741696318632.0205843-CDS-E-siliculosus-1a_F_contig1154:6712..6874Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1154 6713..6874 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927668.5494847-UTR-E-siliculosus-1a_F_contig1154:6874..80721622927668.5494847-UTR-E-siliculosus-1a_F_contig1154:6874..8072Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1154 6875..8072 +
1696318632.0302281-UTR-E-siliculosus-1a_F_contig1154:6874..80721696318632.0302281-UTR-E-siliculosus-1a_F_contig1154:6874..8072Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1154 6875..8072 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1154.1003.1

>prot_E-siliculosus-1a_F_contig1154.1003.1 ID=prot_E-siliculosus-1a_F_contig1154.1003.1|Name=mRNA_E-siliculosus-1a_F_contig1154.1003.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=461bp
MRRGPRRAVRTPLFALSLALHANLTSSLLHHLLATPVGDAISRNHATATV
AAAGTAAGRRRRARPRPAWHFHGNVSPPGRGQSSTSPRCSVRSGPEVAAA
AAAEGENGGPDAAAAEGRSVGARPAMADAPPLTHDQLPEESIYLLDGTSM
LFRAFYGRGAGGYLASNGATEVGAVLAMGIEFAQFINEVKPRYVAMAFDV
GRETTFRRKLYPQYKAQRKPVPLDLTLQIPLAKALSEALGCRTFEMEGYE
ADDVMATLARQDARAGAWLGWWGRSVGLGVVVCSSDKDMCQLVRDRVHVM
QPRRDGYTILGSEEVLAKFGVKPSALPDLFGLVGDVADNIPGVKGIGQKG
GSRLLENFETLEGVFAGLDGVGSMGIRGSKGLQALLSQPGIQEEAMLYRE
IATLDDEVPLEGIDAITSSTFLYRGASPEAEGVMSALGFHAPLRMIQEGS
KRPSARASTV*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1154:859..8072+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1154.1003.1 ID=mRNA_E-siliculosus-1a_F_contig1154.1003.1|Name=mRNA_E-siliculosus-1a_F_contig1154.1003.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7214bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1154:859..8072+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGACGAGGACCGCGAAGAGCCGTGCGCACTCCCCTCTTTGCGCTCTC
GCTAGCACTGCATGCCAATCTTACCTCATCATTGTTGCACCACCTACTGG
CAACGCCAGTAGGAGATGCGATTTCAAGGAATCACGCAACGGCGACCGTA
GCTGCTGCAGGAACGGCGGCAGGAAGAAGAAGGAGAGCACGACCACGGCC
TGCGTGGCACTTCCACGGCAACGTTTCTCCACCAGGGCGTGGGCAATCCA
GTACATCTCCAAGATGCAGCGTTAGAAGTGGTCCGGAGGTAGCAGCGGCA
GCAGCGGCTGAAGGCGAAAATGGAGGGCCGGATGCTGCGGCTGCCGAGGG
CCGTAGCGTGGGAGCGCGTCCTGCGATGGCAGACGCCCCACCTCTGACCC
ACGACCAACTTCCCGAGGAGAGTATTTATCTGCTTGATGGGACCTCCATG
CTGTTCAGGGCGTTCTACGGCCGCGGAGCCGGCGGGTGAGTCCTGCTGGC
CAAGTATATAGCACTGCGCAGTGCGCAGTGCGGAGTTTCTCAACGGATGC
GTACAGTAGTACGTTCAGCGTGCCCCCTTGTACAATTTTTTTGCACACGA
GTGCACATGATGCGATGTATTGTACGGAACAAACCATGGTAATGCAGGCC
ATTGCTATCACCCGTGGAGATACCGCACTTGTGTGCGTATGTTTGTATAA
CTGTGGGTAAACGACGTGCAAACCGTTGGAGATGGGTTATGTGACATTTG
CATACTTTGTAGGTTGTGATCCAGAAGAACGGAGTATCTGTATCATAGAC
AGCAGTAGCGGTGGCAGGACCGCCGTACTGTACCTCAAATTCCTCTGTTC
CTTTGGGATATCGTCGCTCTCAGAGTGTTCCTGCCGTATGGGTTTGCATC
TCCGACTCAAGAGCTTCGCTGCGCTCCCCTGTACACTCGCTGGCGACATA
TCCCCTCCCTTCTGACAGGTACTTGGCCTCCAACGGCGCAACGGAGGTAG
GCGCCGTGCTGGCCATGGGGATAGAGTTCGCGCAGTTCATCAATGAGGTG
AGCACAGCTCTAGTGCTGTGCTGTTGTGTGCATAGCTCCCTTGAGCCTCT
AATTGCCCTCGCCCAGCCAAACTTGGCTACACATGTGGATAGACGCATGG
GTTTACTCCCGGGAATGCGCACCGCGGAAAAGGTGACAGCAGCAGTTTCC
CCTGCTCTGCGCAAAGTAAAGCAATTGCTGTTGATTGTTGCGCTGTAAAT
TTGAGGAATTTAGAATCGCGTCTGGGCGGGTGTTTGGAGGATCCCCTCAC
TATGCTTGGCGATGCTGCGCGCAGCGTGTGGCATGCAGTGCTTCGTGTAT
GGAACCCTCGTCTCCTGAGAGAGTGGTGGTCCACACGGGTTGGTTACTAA
ACCAATCACCAGAGGTTGCGGAGTTTCCTTCCTTGCTATGCGGCCAGGAA
TGCCAAGTTGGACCGAACGAGCTCAGTCGAACTAGGTTGAGGGAGGTTGG
ACGCAGCCTTCGTGGACTCGTCTCTCCCAGCTTCGGGAAGATGCTTCATG
AACTGTTCGCAGCTGTGGAGGATCGTGAGAGGAACGGTTCGCGGAATGGG
GATCTCTCCGCACCGATCCCAGAATCCGCCGCTCCTGCTCATCTCTGCCA
GTGCGGGATTCGGTCTCCTCGCTTACGTCGCCGTCCTGTTCACCAACGGT
TTCGTCACTAGTGCTGATCTCAGAGCCGCCGCTGCCCGTTATTTCGGACC
ACTTGCGATCACGTGCTCTTCGTATTGCGATGTCGCGGCAGGTAAAGCCA
CGATATGTCGCCATGGCCTTCGACGTGGGACGAGAAACAACCTTCCGACG
AAAGCTGTACCCGCAGTACAAGGCGCAGAGAAAGCCTGTGCCGTTGGACT
TGACCTTGCAGGTGATGAAAACCGTACGCCTTGTTGTGCGCAGAATGCGC
TGCTAGAACAGCGACGCCAGAGTACACACCATTGCAAGGTCCGTGGGGGG
CAAGTTTGGGAAGAATGCTTGTCCATGCACATTCGCAACGCAACTCATTC
CCGGACGGATTGATTGTTTCACCTATATAACAATATTTGGGCCTACGCTC
TTGCAGTTTTCTCGGAAAAGCTCTAGCGTTCCTTCCTTGATGGCACACGA
GATACCGTTGACGTTCACGCAGCCACGCCGACGTCCATCAACGACAACAC
GGCGCGCCTCACCCTTCCCTCACGTCGCCCTCTCGCAGATTCCGCTCGCG
AAGGCGCTTTCGGAGGCCCTGGGGTGCCGCACGTTCGAGATGGAGGGCTA
CGAGGCCGACGACGTCATGGCCACGCTCGCCAGGCAAGACGCACGGGCGG
GGGCTTGGCTTGGTTGGTTCATGACGAGATGGGACGGATGTATTTGTTTG
ATCGGTTGAGTAGTTGCAAATGCGGTTCGGTCTCGGCGATCAAGGCTTTT
TTTTTTTTTTTCTGGGTTTGGAAGGTGTGGATGTTTCGCGTGGTCGGTTG
TTTGACTACGCGCACGTGCTGTTGGTCGGTTGCTGCCGCTGCCGCTGCTG
CCGCTGCTGCTGCTGCTGCTCCTGCTGCTGCTGAAACTATTGTTTCTTTT
TTTATTCCGGACGAGAGCCGGAGATTGATCCCAAGATGCCTGCACGCGAC
AAGTGTCGGCATGCGCCTCACGTGGCGTTGTTGCATGGCTGCGTTGTTGT
TGGGCGTCGCGCTTTGTCCAGGTGGGGGCGCTCGGTGGGGCTGGGAGTGG
TGGTGTGCTCCTCTGACAAGGACATGTGCCAGCTCGTGAGAGATCGTGTC
CACGTCATGCAGCCAAGGAGGTGAGGTGCCGAGGCAGGATCTGCTCGTTG
GTGGTGATGCTTGAGTTGAGGAGTAAGGAATTCCTGGAAGGGTCCAGTGC
TGCTACTGTCACAGTTGCGTGCGATAGTGCAGTTTTGAGCTGTGGGGAGC
AGCAGCAGTACAGAGCGTCCGCCGCTTGTGCTGACGGAATATCAACATTT
TTTTACATTTTTTTGTTTCACCTCCTTCTTTTACCCTGTTGGGGACTGCG
CATTGACTTTGTAAAGCCAATAGCAGCATGCCTCTCAACCGGTAAGGGTC
ATGTAGGCAATTGATAAGGGTTTTCTCATGTTTTGGCCTGTTGTAGCATC
ACCTGCATACATGTGCCCATTGCGAAGCGAAACCTCTAGTGGAATGTGGC
CTCTACAGATTCGTGAGAATTCATTCCCGGGTAGATACGTTGTCGATGAC
CTTGCCAACAGTCAAGGCCCAGGCTCTGAGGACCTACGCTCCCTCATAAA
CCGTCACTTTCGGCGACAAGACCTCCTGCCGACAGCTCGTTGCCTATCCC
AGTAGAAGCAGGTGCCTCCCACAAAATTCGAGACCCTTCGAGAATCGGTG
CGAACGTGTGTACAGGCCGGGTGATTGTTCAGATTATCTCGAAACCTTTG
ACCCAAGGCAGGAGTGACGCGGCGTTGTCCGGTAATAACGTGTAGATTTT
GTGTTTCTGTATTTTTTACCGCTCGGCGTGAAATGTCGACCCCCTTTTCT
CTTTGGCTCTTCAAAACTCACGCTTTTTGCACAACCGGTAACCCCTTAGT
CTGTGGTCTTGCCAGGGACGGATACACCATTCTGGGCAGCGAGGAGGTCT
TGGCGAAGTTCGGGGTAAAACCGTCAGCACTCCCTGACCTGTTCGGCCTT
GTCGGTGATGTCGCCGACAACATCCCTGGTGCGACGGTGGTAGCCACGGT
GTTGGACGTTATTTGGCGCGGGCTGCCGTAATGTTAGTTTGTTGGAGAAC
GCCCCGACGCGAGCGAAATTGTTGCGCGGCTGCTCTCGCAGAAGCAAACA
CGCGTTGGTGATCGGAAATTGCGTCGCTTCCCATGCGAGTTCGGTCTGAT
GGAGTGTGTCACGGACAGCAGCAGTTGGTTGTTGACATCTTGGCCAATGT
TGAAGTTGATGGAACTATATAGGGTTGTTGCATACGATTACTGCTACGTG
TTTCTCGATGCGATTTCTCTTCGGACTGCGAAGTTGCGCCGACTTGTTGG
AGTTGAAAAATATGAACGATTTGAGTTTTTTCGAAGCTCCTGCATCGGGC
CTTCAAACTCCGCAGTGAAAATAACGTACTATCGAGACATGCCTCCGAAA
TGGAGGAGGAATACACAGTTCATGGAACCAATGTGCGTGGTTAGTGCACG
AACGCTCAACTCCGTCGGTCGTGCTTCGAAGCAAAGGTTGAGTACGTCTC
CCGTTGTTGCCTTGTTGCCCCGACTCAGGTGTGAAGGGCATCGGGCAAAA
GGGCGGCTCTCGACTGCTGGAAAATTTCGAGACCCTTGAAGGCGTGTTCG
CGGGCTTGGACGGCGTCGGCAGCATGGGGATCCGGGGCTCCAAGGGGTTG
CAGGCTTTGCTGAGGTACACCACTGCTTCGTTGCAGATCGGATATGGTAT
TCTCTTGCAGCGCTGGATGTGTGGCATCAGAGCGACGGGACGAGTTGCAG
CAGGCAGCACACGCAGCACTCGTCGTACGATTCCCTTTTCTGGCAGTCCA
ATTTTTTCTTGGATAAAGAGTTTCTTAGAGATGTCTCTCGCTTGTTCACG
AGTGAGTATTTTTTTTGTGTCTCGCTGTGGAAATGTTTCGCCCTCTCAAG
AAGGCGTTCGGCTTCCCACAGCCTCGTGAACAGCCCTACCCTTACGTACA
AGTACTATCAAGAATCCGCACAGGGCGGTCTGCTGTTGTAGGTCTGGACG
TTCACTTCGCGACGCTGCGTGGCCCGGATTTATGTCGACGCGCTCTTGGA
TTGGGACCCTGGACGGCTACCACAATTGCTGTTGCCGGCGGACGCGTCTC
TTTATGGAGGATGCCGTGGGTAACGTTTGGTCCCCTTTGCGCACCAGGCT
CGATCCTTCGCTCTTACCTATAGCCTACTATTCAGCCCCCTTGTCCGCTT
TCTCCTCGCCCTGTTTTTGCTTGTGGATTTTGCGTTGCCTCACCGTGGTT
GTTGCCTCGGTCTTGTTGGTTCCCCAGTCAGCCCGGTATCCAAGAAGAGG
CGATGTTGTACCGGGAAATCGCAACGCTGGACGATGAGGTGCGATTGGGC
TGATGACGATCTTTGTATCACAGTCATATCTCACCGTTTGTCCAAAGTAA
TACGGAAATGGTTGAGGTCGGCTGAGTGTCTCTGACACAATTACTGGCCG
ATCCCGCCGTCCCTGCCACGAACACGACTTGTGGTGGTGTTTCACGGCCG
TCCACCTAACGACGCAATGTGTATTGCCTCACGAAATCGGCTGCTGCTTG
TGGCCATGACAAGCTTGGCCTCTTTCTGACCTCCGCCAGATCACACATGG
AACGATCTCACAAAGAAAACTGCCGAAAATTCCAGACGTACGACTTGCCT
TGATGTTTGTGGTCGTGTGCGCTCAAAACTTGAAGACTACTGTTATTTTG
GCATTCCTGCTGAGGATATTAGTTTCACCGCACGCCACCGGCCGCAATTT
GGCGTTGACCGAGTTTTTTAGAAAGTACACATAATCTCACAGAAAGGCTA
CCCGTTCGAGACGTAACCCCAGTCGAAAGGGATGTGCTGAAGTCTCTTCA
GTGAGTGGAGGGAAACCGTTGGCTGATTTTTTTTTGTGCTGACGCAAGCT
GTCGACCAGCCACGCATGGAGCAAGAACAAGTGAAAGACCTGCCACACAA
ACCACACATCGAAACTGCTCGTTCGTTTTGGTGTTTCCAGGCCGTGTGAA
CTACATACACGGGACGAAGCGCCGTCTTTATCGCACACCTGCTATCGTTG
TATTTGTCATCTTACGCCTGCTTCGATCTGGCGTCAACGCCCCCGACCCC
TCAGGTACCATTGGAGGGTATCGACGCTATAACGTCGTCGACCTTCCTGT
ACAGGGGAGCGTCTCCGGAAGCTGAGGGGGTCATGTCGGCCCTGGGGTTC
CACGCGCCGTTAAGAATGATCCAGGAAGGTTCCAAGCGACCCTCCGCGCG
GGCTTCGACAGTTTGAGGCTGCTATGTGTGGGCAGCGGTGGGATATGAGC
AGGCGGAGCACAACGATGTCGTTTCTTGGGAGACCGCGTGAAGTGTACAA
AGCTTGCCAGGAGGTGGTTGGTGTCCAGGCAACGTTGTCTTTTTCAGCCC
CTTGGGTTGTCCATGTGTTTCGGTAGAGAGGTGTGTACCGCCCAAGCAAG
GTCATTGGTTGTTGGTCCGGCGATCCGTGATGTTGAAAGTGTGTTCGTTT
CCCTGCCCTCGTCCGCCGGAGAACCACGCCTCGAACAAGCACGATATACA
GCTCATTCAAGAAGCCACTTTACCCTGGTGGTGAAGTGTACCGTTTGATT
TTCTGTGGAGAATTGCGCTAGCCTAGCGTCAGTCACAAACGGGAATAGTG
TGGCTTGCATTTGAGCTCGCCCCCCCCCGCAATTCCCCATACGCTCTCCT
GCGAAAAATTTGTTTCGATGTATGCAACTGGCGATTTTACATCGGGTCGC
ACAGGTCTGCCCTCTCGCAGGTGGACCTGCTAACGCCGAAAGTGTGGTAG
ATATGTCGGCCCGTGGTGCGAGTAGTTTGGTGTGTTTTGGCGGTTTTATT
AATTCTTTGGATAGGACTAGCAGGGATTGGTAAGGTGGAAGATAGTTTGT
CGGCTTATGTCTCTGTTTTGACATTACGTTTCACCCTGCTGAGCGATGCC
ATGGAGGTTCTCAGTGTTACGTAGGCGAGAATCGGGCCCAGACGTGATGT
TAGAATTGTTTCGGTGTGCGTAATATTTGGCGTTTTCACCACGGCGGGAG
ATCGTAAATAGCTTTTCTGCCGGCGGGAGATAGTAAATGGCTTTACTGCT
GTTTCAATTGCGTACAGAAGCTATTAGTTCAGGGTAGTCTCTGTATGAGG
CACAGACAACAGGCTCTGTTGTCATTTAGATTTGTGATTTTGTTTTGCCT
GCTCCATCAGACATGATGAGAGTGGGAGAGGAGGAGATGGGCTAGAGAAT
CGGTGTAACTTTGTGCGTCATAACGGGCACTCTGAGTAGTGCTTTGCAGA
TATTCGGGTGCGGCTGTGCAATGGTTCTACTTGTAGTGCTTCCTGATGCA
CGGCACTCTATGCTCTAGACGGGTGGTACAGTACGTCCACAGGTGGTGGG
GTATATCCGAAACCTACAGACTTTTCTAATTTCTGCAGTTGAAAGGCCAC
AGATACAAGCGATG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1154:859..8072+

>mRNA_E-siliculosus-1a_F_contig1154.1003.1 ID=mRNA_E-siliculosus-1a_F_contig1154.1003.1|Name=mRNA_E-siliculosus-1a_F_contig1154.1003.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2766bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1154:859..8072+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGACGAGGACCGCGAAGAGCCGTGCGCACTCCCCTCTTTGCGCTCTC
GCTAGCACTGCATGCCAATCTTACCTCATCATTGTTGCACCACCTACTGG
CAACGCCAGTAGGAGATGCGATTTCAAGGAATCACGCAACGGCGACCGTA
GCTGCTGCAGGAACGGCGGCAGGAAGAAGAAGGAGAGCACGACCACGGCC
TGCGTGGCACTTCCACGGCAACGTTTCTCCACCAGGGCGTGGGCAATCCA
GTACATCTCCAAGATGCAGCGTTAGAAGTGGTCCGGAGGTAGCAGCGGCA
GCAGCGGCTGAAGGCGAAAATGGAGGGCCGGATGCTGCGGCTGCCGAGGG
CCGTAGCGTGGGAGCGCGTCCTGCGATGGCAGACGCCCCACCTCTGACCC
ACGACCAACTTCCCGAGGAGAGTATTTATCTGCTTGATGGGACCTCCATG
CTGTTCAGGGCGTTCTACGGCCGCGGAGCCGGCGGATGAGACGAGGACCG
CGAAGAGCCGTGCGCACTCCCCTCTTTGCGCTCTCGCTAGCACTGCATGC
CAATCTTACCTCATCATTGTTGCACCACCTACTGGCAACGCCAGTAGGAG
ATGCGATTTCAAGGAATCACGCAACGGCGACCGTAGCTGCTGCAGGAACG
GCGGCAGGAAGAAGAAGGAGAGCACGACCACGGCCTGCGTGGCACTTCCA
CGGCAACGTTTCTCCACCAGGGCGTGGGCAATCCAGTACATCTCCAAGAT
GCAGCGTTAGAAGTGGTCCGGAGGTAGCAGCGGCAGCAGCGGCTGAAGGC
GAAAATGGAGGGCCGGATGCTGCGGCTGCCGAGGGCCGTAGCGTGGGAGC
GCGTCCTGCGATGGCAGACGCCCCACCTCTGACCCACGACCAACTTCCCG
AGGAGAGTATTTATCTGCTTGATGGGACCTCCATGCTGTTCAGGGCGTTC
TACGGCCGCGGAGCCGGCGGGTACTTGGCCTCCAACGGCGCAACGGAGGT
AGGCGCCGTGCTGGCCATGGGGATAGAGTTCGCGCAGTTCATCAATGAGG
TACTTGGCCTCCAACGGCGCAACGGAGGTAGGCGCCGTGCTGGCCATGGG
GATAGAGTTCGCGCAGTTCATCAATGAGGTAAAGCCACGATATGTCGCCA
TGGCCTTCGACGTGGGACGAGAAACAACCTTCCGACGAAAGCTGTACCCG
CAGTACAAGGCGCAGAGAAAGCCTGTGCCGTTGGACTTGACCTTGCAGGT
AAAGCCACGATATGTCGCCATGGCCTTCGACGTGGGACGAGAAACAACCT
TCCGACGAAAGCTGTACCCGCAGTACAAGGCGCAGAGAAAGCCTGTGCCG
TTGGACTTGACCTTGCAGATTCCGCTCGCGAAGGCGCTTTCGGAGGCCCT
GGGGTGCCGCACGTTCGAGATGGAGGGCTACGAGGCCGACGACGTCATGG
CCACGCTCGCCAGGCAAGACGCACGGGCGGGGGCTTGGCTTGGTTGATTC
CGCTCGCGAAGGCGCTTTCGGAGGCCCTGGGGTGCCGCACGTTCGAGATG
GAGGGCTACGAGGCCGACGACGTCATGGCCACGCTCGCCAGGCAAGACGC
ACGGGCGGGGGCTTGGCTTGGTTGGTGGGGGCGCTCGGTGGGGCTGGGAG
TGGTGGTGTGCTCCTCTGACAAGGACATGTGCCAGCTCGTGAGAGATCGT
GTCCACGTCATGCAGCCAAGGAGGTGGGGGCGCTCGGTGGGGCTGGGAGT
GGTGGTGTGCTCCTCTGACAAGGACATGTGCCAGCTCGTGAGAGATCGTG
TCCACGTCATGCAGCCAAGGAGGGACGGATACACCATTCTGGGCAGCGAG
GAGGTCTTGGCGAAGTTCGGGGTAAAACCGTCAGCACTCCCTGACCTGTT
CGGCCTTGTCGGTGATGTCGCCGACAACATCCCTGGGACGGATACACCAT
TCTGGGCAGCGAGGAGGTCTTGGCGAAGTTCGGGGTAAAACCGTCAGCAC
TCCCTGACCTGTTCGGCCTTGTCGGTGATGTCGCCGACAACATCCCTGGT
GTGAAGGGCATCGGGCAAAAGGGCGGCTCTCGACTGCTGGAAAATTTCGA
GACCCTTGAAGGCGTGTTCGCGGGCTTGGACGGCGTCGGCAGCATGGGGA
TCCGGGGCTCCAAGGGGTTGCAGGCTTTGCTGAGGTGTGAAGGGCATCGG
GCAAAAGGGCGGCTCTCGACTGCTGGAAAATTTCGAGACCCTTGAAGGCG
TGTTCGCGGGCTTGGACGGCGTCGGCAGCATGGGGATCCGGGGCTCCAAG
GGGTTGCAGGCTTTGCTGAGTCAGCCCGGTATCCAAGAAGAGGCGATGTT
GTACCGGGAAATCGCAACGCTGGACGATGAGTCAGCCCGGTATCCAAGAA
GAGGCGATGTTGTACCGGGAAATCGCAACGCTGGACGATGAGGTACCATT
GGAGGGTATCGACGCTATAACGTCGTCGACCTTCCTGTACAGGGGAGCGT
CTCCGGAAGCTGAGGGGGTCATGTCGGCCCTGGGGTTCCACGCGCCGTTA
AGAATGATCCAGGAAGGTTCCAAGCGACCCTCCGCGCGGGCTTCGACAGT
TTGAGTACCATTGGAGGGTATCGACGCTATAACGTCGTCGACCTTCCTGT
ACAGGGGAGCGTCTCCGGAAGCTGAGGGGGTCATGTCGGCCCTGGGGTTC
CACGCGCCGTTAAGAATGATCCAGGAAGGTTCCAAGCGACCCTCCGCGCG
GGCTTCGACAGTTTGA
back to top