mRNA_E-siliculosus-1a_F_contig11527.1000.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11527.1000.1
Unique NamemRNA_E-siliculosus-1a_F_contig11527.1000.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig11527.1000.1 vs. uniprot
Match: Q8QN74_ESV1K (EsV-1-216 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN74_ESV1K)

HSP 1 Score: 230 bits (587), Expect = 1.530e-73
Identity = 157/180 (87.22%), Postives = 161/180 (89.44%), Query Frame = 1 
Query:    1 ASALTDRVTSVEQEVALVSSASDEISALESAATAVSNRVDATEXXXXXXXXXXXXXXXXXXXXXXXXXXLEQQDTSLVSTISDLSARVTTAENAIDAVNTSLALAIQKIDTLGSQDLESRVDALEENDPIGVADRVYLVSNATNRMMYATASTANANGTVTNEYTSWKMYKETPDAQAIV 540
            ASALTDRVTSVEQ VA VSS   EISALESAATAVSNRVDATE       XXXXXXXXXXXXXXXXXXXLEQ+DTSL STISDLSARVTTAENAIDAVNTSLALAIQ+IDTL SQDL SRVD+LEENDPIGVADRVYLVSNATNRMMYAT STANANG VTNEYTSWKMYKET  AQA+V
Sbjct:   69 ASALTDRVTSVEQGVAAVSSVPGEISALESAATAVSNRVDATEDDIVAQVXXXXXXXXXXXXXXXXXXXLEQKDTSLASTISDLSARVTTAENAIDAVNTSLALAIQRIDTLESQDLGSRVDSLEENDPIGVADRVYLVSNATNRMMYATTSTANANGVVTNEYTSWKMYKETSAAQAVV 248
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig11527.1000.1 vs. uniprot
Match: D8LP34_ECTSI (EsV-1-216 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP34_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 9.660e-48
Identity = 109/157 (69.43%), Postives = 113/157 (71.97%), Query Frame = 1 
Query:   70 EISALESAATAVSNRVDATEXXXXXXXXXXXXXXXXXXXXXXXXXXLEQQDTSLVSTISDLSARVTTAENAIDAVNTSLALAIQKIDTLGSQDLESRVDALEENDPIGVADRVYLVSNATNRMMYATASTANANGTVTNEYTSWKMYKETPDAQAIV 540
            EISALESAATAVSNR     XXXXX                     LEQQDTSL STISDL+ARVTTAENAIDAV TSL LAIQ+I+TL            EENDPIGVADRVYLVSNAT+RMMYATASTANAN TVTNEYTSWKMYKET DAQA V
Sbjct:   91 EISALESAATAVSNRXXXXXXXXXX---------------------LEQQDTSLASTISDLTARVTTAENAIDAVTTSLTLAIQRIETL------------EENDPIGVADRVYLVSNATSRMMYATASTANANSTVTNEYTSWKMYKETSDAQAAV 214
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11527.1000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QN74_ESV1K1.530e-7387.22EsV-1-216 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LP34_ECTSI9.660e-4869.43EsV-1-216 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11527contigE-siliculosus-1a_F_contig11527:3..548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size546
Model size546
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927667.68604-CDS-E-siliculosus-1a_F_contig11527:2..5481622927667.68604-CDS-E-siliculosus-1a_F_contig11527:2..548Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11527 3..548 +
1696318631.7643204-CDS-E-siliculosus-1a_F_contig11527:2..5481696318631.7643204-CDS-E-siliculosus-1a_F_contig11527:2..548Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11527 3..548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11527.1000.1prot_E-siliculosus-1a_F_contig11527.1000.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11527 3..548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11527.1000.1

>prot_E-siliculosus-1a_F_contig11527.1000.1 ID=prot_E-siliculosus-1a_F_contig11527.1000.1|Name=mRNA_E-siliculosus-1a_F_contig11527.1000.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=182bp
ASALTDRVTSVEQEVALVSSASDEISALESAATAVSNRVDATEDDIVAQV
SATTALSTRVGATEDDIAALEQQDTSLVSTISDLSARVTTAENAIDAVNT
SLALAIQKIDTLGSQDLESRVDALEENDPIGVADRVYLVSNATNRMMYAT
ASTANANGTVTNEYTSWKMYKETPDAQAIVK*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig11527:3..548+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11527.1000.1 ID=mRNA_E-siliculosus-1a_F_contig11527.1000.1|Name=mRNA_E-siliculosus-1a_F_contig11527.1000.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=546bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11527:3..548+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCGTCTGCCCTCACGGATCGCGTTACGTCCGTTGAGCAGGAAGTCGCGTT
GGTATCGAGTGCTTCTGATGAGATTTCAGCACTGGAATCCGCGGCGACGG
CCGTATCAAATCGGGTCGATGCAACGGAGGATGATATTGTAGCACAGGTA
TCCGCGACGACGGCCTTATCGACTCGCGTCGGTGCAACTGAGGACGATAT
TGCAGCGTTGGAGCAGCAAGATACGAGTCTTGTGTCCACCATCTCAGACT
TGTCGGCTCGTGTGACAACGGCCGAAAACGCAATCGATGCTGTCAATACG
AGTCTCGCGCTAGCCATCCAAAAAATTGACACCTTAGGGTCCCAAGACCT
AGAGTCCAGAGTCGACGCACTCGAGGAAAACGACCCAATCGGAGTGGCGG
ACAGGGTTTACCTTGTCAGTAACGCAACCAACCGCATGATGTATGCCACT
GCGTCGACAGCCAATGCTAATGGCACTGTAACAAACGAGTACACGTCTTG
GAAAATGTACAAGGAGACACCTGACGCACAGGCTATCGTGAAATAA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11527:3..548+

>mRNA_E-siliculosus-1a_F_contig11527.1000.1 ID=mRNA_E-siliculosus-1a_F_contig11527.1000.1|Name=mRNA_E-siliculosus-1a_F_contig11527.1000.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1092bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11527:3..548+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCGTCTGCCCTCACGGATCGCGTTACGTCCGTTGAGCAGGAAGTCGCGTT
GGTATCGAGTGCTTCTGATGAGATTTCAGCACTGGAATCCGCGGCGACGG
CCGTATCAAATCGGGTCGATGCAACGGAGGATGATATTGTAGCACAGGTA
TCCGCGACGACGGCCTTATCGACTCGCGTCGGTGCAACTGAGGACGATAT
TGCAGCGTTGGAGCAGCAAGATACGAGTCTTGTGTCCACCATCTCAGACT
TGTCGGCTCGTGTGACAACGGCCGAAAACGCAATCGATGCTGTCAATACG
AGTCTCGCGCTAGCCATCCAAAAAATTGACACCTTAGGGTCCCAAGACCT
AGAGTCCAGAGTCGACGCACTCGAGGAAAACGACCCAATCGGAGTGGCGG
ACAGGGTTTACCTTGTCAGTAACGCAACCAACCGCATGATGTATGCCACT
GCGTCGACAGCCAATGCTAATGGCACTGTAACAAACGAGTACACGTCTTG
GAAAATGTACAAGGAGACACCTGACGCACAGGCTATCGTGAAATAAGCGT
CTGCCCTCACGGATCGCGTTACGTCCGTTGAGCAGGAAGTCGCGTTGGTA
TCGAGTGCTTCTGATGAGATTTCAGCACTGGAATCCGCGGCGACGGCCGT
ATCAAATCGGGTCGATGCAACGGAGGATGATATTGTAGCACAGGTATCCG
CGACGACGGCCTTATCGACTCGCGTCGGTGCAACTGAGGACGATATTGCA
GCGTTGGAGCAGCAAGATACGAGTCTTGTGTCCACCATCTCAGACTTGTC
GGCTCGTGTGACAACGGCCGAAAACGCAATCGATGCTGTCAATACGAGTC
TCGCGCTAGCCATCCAAAAAATTGACACCTTAGGGTCCCAAGACCTAGAG
TCCAGAGTCGACGCACTCGAGGAAAACGACCCAATCGGAGTGGCGGACAG
GGTTTACCTTGTCAGTAACGCAACCAACCGCATGATGTATGCCACTGCGT
CGACAGCCAATGCTAATGGCACTGTAACAAACGAGTACACGTCTTGGAAA
ATGTACAAGGAGACACCTGACGCACAGGCTATCGTGAAATAA
back to top