mRNA_E-siliculosus-1a_F_contig11525.999.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11525.999.1
Unique NamemRNA_E-siliculosus-1a_F_contig11525.999.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11525.999.1 vs. uniprot
Match: A0A024URA4_9STRA (ULP_PROTEASE domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024URA4_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 1.080e-5
Identity = 25/59 (42.37%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:    1 RGTRGNPILFYYPLESTARDRIPIDSVDIGRTEPMEWLNDNLVNVGLRSVDVCEATSAA 177
            R   G+PI+  YPL   A D I I   D+ R +PME+LNDNLV+   + + + +  SAA
Sbjct:  496 RAVEGSPIVLTYPLPPNATDVISITRADLDRLQPMEYLNDNLVDYYFKWLVMADMPSAA 554
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BLAST of mRNA_E-siliculosus-1a_F_contig11525.999.1 vs. uniprot
Match: A0A024UNX3_9STRA (ULP_PROTEASE domain-containing protein n=4 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UNX3_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 1.090e-5
Identity = 25/59 (42.37%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:    1 RGTRGNPILFYYPLESTARDRIPIDSVDIGRTEPMEWLNDNLVNVGLRSVDVCEATSAA 177
            R   G+PI+  YPL   A D I I   D+ R +PME+LNDNLV+   + + + +  SAA
Sbjct:  496 RAVEGSPIVLTYPLPPNATDVISITRADLDRLQPMEYLNDNLVDYYFKWLVMADMPSAA 554
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11525.999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A024URA4_9STRA1.080e-542.37ULP_PROTEASE domain-containing protein n=1 Tax=Aph... [more]
A0A024UNX3_9STRA1.090e-542.37ULP_PROTEASE domain-containing protein n=4 Tax=Aph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11525contigE-siliculosus-1a_F_contig11525:605..802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size198
Model size198
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927667.6467884-CDS-E-siliculosus-1a_F_contig11525:604..8021622927667.6467884-CDS-E-siliculosus-1a_F_contig11525:604..802Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11525 605..802 +
1696318631.7500644-CDS-E-siliculosus-1a_F_contig11525:604..8021696318631.7500644-CDS-E-siliculosus-1a_F_contig11525:604..802Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11525 605..802 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11525.999.1prot_E-siliculosus-1a_F_contig11525.999.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11525 605..802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11525.999.1

>prot_E-siliculosus-1a_F_contig11525.999.1 ID=prot_E-siliculosus-1a_F_contig11525.999.1|Name=mRNA_E-siliculosus-1a_F_contig11525.999.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=66bp
RGTRGNPILFYYPLESTARDRIPIDSVDIGRTEPMEWLNDNLVNVGLRSV
DVCEATSAAVVIHNF*
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mRNA from alignment at E-siliculosus-1a_F_contig11525:605..802+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11525.999.1 ID=mRNA_E-siliculosus-1a_F_contig11525.999.1|Name=mRNA_E-siliculosus-1a_F_contig11525.999.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=198bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11525:605..802+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGGGGAACCCGGGGCAACCCTATCCTTTTCTACTATCCACTAGAGTCGAC
GGCGAGAGACAGGATCCCCATCGACAGCGTGGACATCGGCCGTACCGAGC
CAATGGAGTGGTTGAACGACAACCTCGTCAACGTGGGACTCAGGTCAGTG
GACGTGTGTGAAGCCACAAGCGCAGCCGTTGTCATACACAATTTTTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11525:605..802+

>mRNA_E-siliculosus-1a_F_contig11525.999.1 ID=mRNA_E-siliculosus-1a_F_contig11525.999.1|Name=mRNA_E-siliculosus-1a_F_contig11525.999.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=396bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11525:605..802+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGGGGAACCCGGGGCAACCCTATCCTTTTCTACTATCCACTAGAGTCGAC
GGCGAGAGACAGGATCCCCATCGACAGCGTGGACATCGGCCGTACCGAGC
CAATGGAGTGGTTGAACGACAACCTCGTCAACGTGGGACTCAGGTCAGTG
GACGTGTGTGAAGCCACAAGCGCAGCCGTTGTCATACACAATTTTTAAAG
GGGAACCCGGGGCAACCCTATCCTTTTCTACTATCCACTAGAGTCGACGG
CGAGAGACAGGATCCCCATCGACAGCGTGGACATCGGCCGTACCGAGCCA
ATGGAGTGGTTGAACGACAACCTCGTCAACGTGGGACTCAGGTCAGTGGA
CGTGTGTGAAGCCACAAGCGCAGCCGTTGTCATACACAATTTTTAA
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