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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig115.977.1 vs. uniprot
Match: A0A6H5JQW8_9PHAE (DUF2470 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQW8_9PHAE) HSP 1 Score: 593 bits (1528), Expect = 1.340e-203 Identity = 298/312 (95.51%), Postives = 303/312 (97.12%), Query Frame = 3
Query: 138 MHTSSAAATGAAHARAAALSLVLWLFLNTPTTCGFQATTMMVARASWKEYWLAKNGAKNDPAAVPSTRGAARRSSRTRWEPTRPAWWIAKSPAKVQGAPPVLATPDLDGGSFDKDQITDVLQHEYRHNLVRVAQKYDSLIESVEGVDAITIKELDGDHMQLDVVYCDQGERTCVAVAVPVIFPYHCNDADCVIGVIHELEKAENVEPRPAMANVPPKYVSPELIGTIARICVVMNRDFQDELRNFVRAFGGPVADEMVGNCEMLSLSPDGFMVRSEANPDKPVSIAFSKECQSASDFQKQILLVSERAMAIA 1073
MHTSSAAA+ AAHARAAALSLVL LF NTPTTCGFQ TTMMVARASWKEYWLAKNGAKN PAAVPSTRGAARRSSRTRWEPTRPAWWIAKSPAKVQG+PPVL TP LDGGSFDK+QITDVLQHEYRHNLVRVAQKYDSLIESVEGVDAITIKELDGDHMQLDVVYCDQGERTCVAVAVPVIFPYHCNDADCVIGVIHELE+AENVEPRPAMANVPPKYVSPELIGTIARIC VMNRDFQDELRNFVRAFGGPVADEMVGNCEMLSLSPDGFMVRS+ANPDKPVSIAFSKECQSA DFQKQILLVSERAMAIA
Sbjct: 1 MHTSSAAASRAAHARAAALSLVLCLFFNTPTTCGFQTTTMMVARASWKEYWLAKNGAKNAPAAVPSTRGAARRSSRTRWEPTRPAWWIAKSPAKVQGSPPVLETPVLDGGSFDKEQITDVLQHEYRHNLVRVAQKYDSLIESVEGVDAITIKELDGDHMQLDVVYCDQGERTCVAVAVPVIFPYHCNDADCVIGVIHELEQAENVEPRPAMANVPPKYVSPELIGTIARICAVMNRDFQDELRNFVRAFGGPVADEMVGNCEMLSLSPDGFMVRSDANPDKPVSIAFSKECQSALDFQKQILLVSERAMAIA 312
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 939 |
| Model size | 2890 |
| Exons | 5 |
| Ec32 ortholog | Ec-01_011130.1 |
| Ec32 ortholog description | Domain of unknown function DUF2470 |
| Hectar predicted targeting category | signal peptide |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig115.977.1 >prot_E-siliculosus-1a_F_contig115.977.1 ID=prot_E-siliculosus-1a_F_contig115.977.1|Name=mRNA_E-siliculosus-1a_F_contig115.977.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=313bp
MHTSSAAATGAAHARAAALSLVLWLFLNTPTTCGFQATTMMVARASWKEY
WLAKNGAKNDPAAVPSTRGAARRSSRTRWEPTRPAWWIAKSPAKVQGAPP
VLATPDLDGGSFDKDQITDVLQHEYRHNLVRVAQKYDSLIESVEGVDAIT
IKELDGDHMQLDVVYCDQGERTCVAVAVPVIFPYHCNDADCVIGVIHELE
KAENVEPRPAMANVPPKYVSPELIGTIARICVVMNRDFQDELRNFVRAFG
GPVADEMVGNCEMLSLSPDGFMVRSEANPDKPVSIAFSKECQSASDFQKQ
ILLVSERAMAIA* back to topmRNA from alignment at E-siliculosus-1a_F_contig115:38634..44279- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig115.977.1 ID=mRNA_E-siliculosus-1a_F_contig115.977.1|Name=mRNA_E-siliculosus-1a_F_contig115.977.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5646bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig115:38634..44279- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCGCACAACCCAACAACGATACATCGATACTCACACATTTCTCCAGCTGC
AGTTCTCTGCCTCTCCTAGCTCTCCCCCAGCCTGCAAACGCCACGCCGGA
GTCTCCTACGACCAGCGCACGCCTTCCGACGAGCGCAATGCACACCTCTT
CGGCTGCTGCCACCGGTGCCGCCCATGCGCGTGCCGCTGCGCTGTCGCTG
GTGCTCTGGTTATTTTTAAACACGCCAACAACATGCGGATTCCAGGCGAC
CACCATGATGGTGGCGAGGGCTTCTTGGAAGGAGTACTGGCTGGCCAAGA
ACGGCGCGAAGAACGACCCCGCGGCGGTCCCATCGACACGAGGCGCGGCG
CGGCGGAGCAGCCGGACTAGATGGGAACCCACGAGGCCCGCGTGGTGGAT
CGCCAAGAGCCCGGCCAAGGTGCAAGGCGCACCTCCGGTGCTTGCAACGC
CTGACCTGGACGGAGGAAGCTTCGACAAGGACCAGATAACCGACGTCCTG
CAGCACGAGTACAGGCACAACCTCGTGCGCGTTGCCCAGAAGTACGACTC
CCTCATCGAGAGCGTGGAGGGCGTGGACGCGATAACCATCAAGGAACTGG
ATGGGTGGGTTCCGAAAAAATCGTTGGGTAATTCTTTGTTGGCGGTTGGT
CGGCGCCTCGTCGCACGTCTTGCACCAGGGCTTACTCCGTGTTTGGGCGA
ATTTTGCCCCGGATACTGCTTAGAGTTGTCTCCGCACCGATTCATGGTTT
GCATGACGCGAGTAGGCTCCCTTCCTGTGTCGTTGTGCCCGACGCGCTGC
TGACAGCGGTGGCAAGTGTCCCAAGAAATATATAACGGCCGAAAAAACTA
CGTCACGAACCAGCCCCCCCCAAAAACGTCGCAGGTGCTGTTTCTGTTGC
TGTAGAATCTCACGTCTCTTGATGGTTTTGGATTGGCCAAGGCAGCCCAT
CGCTTCAAGTGCGAAGCGTGACATGGTGACATCACGATTATCGGGGCACA
AGGGTGCCGTGCGAACATATGTAGCGAGCACTTCTTGTGATCTACGAACG
CATTATGTGATAGATGAAGCTATTCTTGCAAGGGCTTAGAAAGGAGTCGC
GTGCGTGCGATTGTAAATGAAACATTCGTTCTGCTGGTGTTGGCGGCGGA
TGCCAGTATGTTTGGATGTGTGGTGTGCGCGCGTTTGTGTTAATCGAGAG
AATATTTTCGCATGCACAAAGTGTGCACAATTGCACACGCCTTACGTCAC
GCATGTGCGCTGTTTTGCCGTGCTTTTTGGCAGCTGAGCAATGCCACCCA
TGAAACGTACTGCTGTGGAACAATAATGCACATGACATCAGAGAAACCCA
CATTTATGTTTGTGACTTCCCGTGCGATGCTACGTATGCATATGCTCCCT
GTGTTCGAAGGGATGTTGTGTGATGTGTGGAAGGTATCTTTGAGGGTTCA
TTCAGCGACGCTTGCTTGGGTCTGGTTTTTAGCCTGTGTGCTGCTGCTGT
ACCTATTTGTTGATGGGAGTGCAGAAATTGCATACTTGTAGTCGAGAAGA
AATTTGCAGCAGTCCATCGCCGTCCGTTGTTGCACGTTTGATACTCATAC
CTGACGCACGACACGGTAGATGTATGTAGAATATTGCAAGCCCTACCGTA
CAAGTAAGAGACAAAAAACTCACGTGTGGGCATGATGTAGCAGGAAATAA
TAATAAGAGTAACAAGCAACTCGACTTGACTCGACCCATTTTTTCCGCGC
CGCCTTGTCTTTTTCTTTACTTGATTCTCCCTCCCCAACGTGCATCGTGT
TTTTTTGCGCTCCCAGGGATCACATGCAGCTGGACGTTGTTTACTGCGAT
CAGGGAGAGCGAACCTGCGTCGCGGTTGCTGTACCCGTCATTTTCCCGTA
CCACTGCAACGACGGTAAGCATCTCAGACCTGCATATATCGGGAAAAGTG
TAACTTGTAGTGGAGAAAAAGCCCTAAAACTAGGCTGCGCTCCCCGCCCA
CATCGTTTCCTGCCGTGGGTGTCCATGAATGCCGTTGTTTGTTTTGCTGC
GGTCAAGGTACTCAAACGAAGCAAGCTTGACCTATAAATTAATCCAAGGC
CTTACGTGGCGTGGCGTTAGCGACCAGAAGAAACTGAAACTACTATGGAT
CGGCGTCGGTATCACCCGAAGGCAAGTAAAATAACTCCAGTAATACTGCG
CGCCTGTATATGCATAAGAGATGACACTTTACTGAGACCTGATTTTCGGT
CCCCCGTTTTTTGGTGCGCTCCTTGGGGCTGTGTGACCTGCGCGATTCTT
CCTCACCCCGTTGGTTCTATTGGTCCCATCAGCTGACTGCGTTATTGGCG
TCATCCACGAGCTGGAGAAAGCGGAGAACGTGGAGCCGAGACCAGCCATG
GCGAACGTTCCCCCGGTAGGAAAAAAGAAAAGAAAAAACGCGACACAGGT
GTTGATAGCGCCCGCGTAATTGCGTGTGTCTCTGCATGTGCATGTCGCAA
ACACTAAATAGTATGCACGTGCTCGCCTCTAGTGCAATCCGCGAGAGTAC
ACATGTGCATACAAAAACATGTTTTTGGGTGTCGTTTTTGACCCATAGTA
TGCGTATCACATTGTTCAGAGGCTCTCTCTTTTTATTCATGCACTCGTGT
GTGTGTTGTATTGTATGGATATCAAAAGTGTCATATGTCTGTCATGCGAA
CTCAGTAGGGTTGCGGGGTTGGATGTGGTAACTTTCCATGATAGAGGTTG
TGGTGGTACTCCAGACCTTGCCTTGACCCCGGCATTGTGTTCGTTAGGCG
ATTACGATCCCTCATACTAATGTTTGAACAGTCAGTATCAGGTGTCATAA
TGCACAGGTGCTCGACAGCATTTTTCGAGTATGTGGCAGTAAGCTAGCGT
GCAGTCCGGCACTACCCCTTCAATCGCTTCTAACGCTCTTGCTGCCAAAG
CATGCACGCGTAAGCGAATGAAGATCTTTTCACCTGATTTCCCGCATCCT
CTTGCTCGCTTCCCTTGCAGAAGTACGTCTCGCCGGAACTTATCGGGACG
ATCGCAAGGATCTGCGTCGTGATGAACCGAGATTTCCAGGTTCGTGTTTT
TGTTTATCTTCGTGGGCACGGGAAGAACCAATTTTATGGCGTGCTTGATT
GGAGGGGATGCCGATAGAAGCATGGTGGTGATTTTCGTATCGCCCTGAGC
GTGTGTGACGGAAGGCGATTCATTTTGTTCCAGCTTTTGAACGTTTGCGG
GTTACAAACTTGGTTGCTTTATTAACCAACACGGCTGGGGTTCTACCATA
ACTTGTACAATAGGTGTTACCCCGCATGCATGTATGCATATGAATCGACA
TGTCCACGGGCTAGACACGATCACGTGAAGAAGTAAACATCAAACCCTCA
GGCGTTCTCTGCAGAGAAAGAAGGTGCTTCCTCCCCCTCTCGTACCCTAC
GTAACAAACAGAACCGAAGGAACACCGGCCGAGTACATGTGTCGCTTCAG
GTTGAGATCAACAACGATTTTTTTATAACTCTCGTGCACGAAGCATCGAA
CCCTTGGTCCCTCTTTCAACTCCGGTGCCATCTTCGATGCTGCTGCACTG
TACCCTTCAGGACGAACTGAGAAACTTCGTGCGAGCATTTGGGGGACCGG
TTGCTGACGAAATGGTGGGGAACTGCGAAATGCTCTCCCTCTCGCCTGAC
GGTTTCATGGTGCGATCGGAGGCGAACCCAGACAAGCCGGTGTCGATAGC
CTTCTCCAAGGAATGCCAGTCCGCATCGGACTTCCAGAAGCAAATCCTGT
TGGTCAGTGAGCGGGCCATGGCGATTGCGTGAGTTTTGTGTGCTCACGAG
AGGAGGGCTTGGACGGGCAGCAGCTCCTGTAGATGTTGTTGGGCGAGGGT
GTCTTGAGATCCTTGGAACGCCTGCTTCTGTGGTGTGCAAGTTTGGATTG
CCCTGGTCCTGACGGGAGGGGGAACGGTTCACGCGCGAAGGGGCAAGTAG
CAGGCGGCGGTTTCAGATTATTTGCGTGCGCAACGGGTACTAGAGAGGAA
ATCTGAGAATTGTGCCACACTTTTTTGTTGGCTCGTGGGTAGGTTGGGTT
CCGTGTGCGGTAGAGCGAGGGCAGGAACCTGAGGGACCTGATGATCGTGG
TGAGATTCAGGCCCGTTGGCAGTGTCCGAGTTCATAAAAGTAGTGAGGGG
GGGACTTTATCCTTGACATCGGTCTTGCGAAAGCAGGGAGGGTTGGATGA
CCTCTCCGTGGGCTTCAGAGTTTCAATGCTGCTTACGTGTAGTTTTGTCA
TTTCGGACCCAAGCCGGCGCCGAGGACTTGCTGTTTTGCACATGACCAAA
ATAGTCAAACTTTTTACTCGAGATACGTGGAAAACAGAGGATTTGTGGAT
GAATGGCCTATCGGGTTGGTGTCAAGTTGTCACCCGCGGGAAAAGATGAA
CGGTGCAGACCGATGGTTTCCGGGAGGGATACTTGGACCCCCCTCGCCTG
AATATATGCTGGTCATGTAGGTTGTACCATGGTGTCCTGAATGGGGCGAT
GAGGCAAGCCGTCCCCACACCGTCCGAACGGTATCCTGGGGTCGTCAGCT
ACTGTACGAGTACAGGGCGGCTTTATCTGTTGATGTTGTTTCTAAAGCTA
TCTCCATCCTTGCTGTTATTCTGGCAGGACGATTTTTGTTTGTAGTTTTG
TTGTTCTTTCTCTCATAGCTCTGAGTTGTTGAATCCTCCACGGAGGCGAA
GCTCGAAGCTGGTTACCGTTGATAGCTCACGAAGTTTTCCACGATGAACA
GTGAACAGGCGGGTATCGAAGGAGACGAAAAGGTGCCGGTTCTGAAGCGA
TACACGTCGTTTTTCATCCCTCAATCTTGTTCCCATATCAAAATGTATCA
TCGGCTTGTGGACATGTTGACTGCTTGACCTACTGGGTGGTGTTGTGTGA
TTTTCTGAGCGCGTTTGGGTGGTAAGTGAGTTTGGCTATGTGGCGAAGAG
AAGACAAAGAGTCCGAAGGAAGATTAGCGAGAGAAAGAAACAATCTCCGT
CCACGCAGATGATTGATGTAGAAAAGCTGGCGAGCACGCATCCATTTATG
TTTGTGGTATTTATGTCGAGTCAAGGAATGTGATCCAGAGTTGCGGTGTA
AGAGCCTGAATCATCAAGAAAATCATCAAGAAATTCTTGATTGGTCAGTC
GACAGCATATCGATCGAAGACGTTGATGGTGTCCATGTGGGTCTCTGGTA
GTTATATTTTGATGTTGTTGCGTGTTTCGGGAGATTCACGAAGGTATCAC
GGCGGCCTGAAACGTATCATGTGCTCGATGAGCACTCAGACTAGCTGTTC
GAATAAGAACAAGAAGATGTCGCTCGTTCGAGGCCCTGTTCCTTGTTTGC
AAGGTGTTGTGTAGTGGCGAAAGAAAGGTGTTCGGCAAGCACGGGTAGGG
TATTGGATCACGATGTAAATTGGTGGGGACGTGATGTGCCACTGCCGCGC
GATGAGGTCGAAAGGATGTGATCGGAAGACCGGTTCGAAAATATGGGTTT
TTGGTGTAACACGGGGTTGAGCTATTGCGTGAGATTGTTCAGGTTTGATT
GTATTAATAAAAAAGACTCCAATGTTCTCTTTTTTTGCGATTCGGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig115:38634..44279- >mRNA_E-siliculosus-1a_F_contig115.977.1 ID=mRNA_E-siliculosus-1a_F_contig115.977.1|Name=mRNA_E-siliculosus-1a_F_contig115.977.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1878bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig115:38634..44279- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCACACCTCTTCGGCTGCTGCCACCGGTGCCGCCCATGCGCGTGCCGC
TGCGCTGTCGCTGGTGCTCTGGTTATTTTTAAACACGCCAACAACATGCG
GATTCCAGGCGACCACCATGATGGTGGCGAGGGCTTCTTGGAAGGAGTAC
TGGCTGGCCAAGAACGGCGCGAAGAACGACCCCGCGGCGGTCCCATCGAC
ACGAGGCGCGGCGCGGCGGAGCAGCCGGACTAGATGGGAACCCACGAGGC
CCGCGTGGTGGATCGCCAAGAGCCCGGCCAAGGTGCAAGGCGCACCTCCG
GTGCTTGCAACGCCTGACCTGGACGGAGGAAGCTTCGACAAGGACCAGAT
AACCGACGTCCTGCAGCACGAGTACAGGCACAACCTCGTGCGCGTTGCCC
AGAAGTACGACTCCCTCATCGAGAGCGTGGAGGGCGTGGACGCGATAACC
ATCAAGGAACTGGATGGATGCACACCTCTTCGGCTGCTGCCACCGGTGCC
GCCCATGCGCGTGCCGCTGCGCTGTCGCTGGTGCTCTGGTTATTTTTAAA
CACGCCAACAACATGCGGATTCCAGGCGACCACCATGATGGTGGCGAGGG
CTTCTTGGAAGGAGTACTGGCTGGCCAAGAACGGCGCGAAGAACGACCCC
GCGGCGGTCCCATCGACACGAGGCGCGGCGCGGCGGAGCAGCCGGACTAG
ATGGGAACCCACGAGGCCCGCGTGGTGGATCGCCAAGAGCCCGGCCAAGG
TGCAAGGCGCACCTCCGGTGCTTGCAACGCCTGACCTGGACGGAGGAAGC
TTCGACAAGGACCAGATAACCGACGTCCTGCAGCACGAGTACAGGCACAA
CCTCGTGCGCGTTGCCCAGAAGTACGACTCCCTCATCGAGAGCGTGGAGG
GCGTGGACGCGATAACCATCAAGGAACTGGATGGGGATCACATGCAGCTG
GACGTTGTTTACTGCGATCAGGGAGAGCGAACCTGCGTCGCGGTTGCTGT
ACCCGTCATTTTCCCGTACCACTGCAACGACGGGATCACATGCAGCTGGA
CGTTGTTTACTGCGATCAGGGAGAGCGAACCTGCGTCGCGGTTGCTGTAC
CCGTCATTTTCCCGTACCACTGCAACGACGCTGACTGCGTTATTGGCGTC
ATCCACGAGCTGGAGAAAGCGGAGAACGTGGAGCCGAGACCAGCCATGGC
GAACGTTCCCCCGCTGACTGCGTTATTGGCGTCATCCACGAGCTGGAGAA
AGCGGAGAACGTGGAGCCGAGACCAGCCATGGCGAACGTTCCCCCGAAGT
ACGTCTCGCCGGAACTTATCGGGACGATCGCAAGGATCTGCGTCGTGATG
AACCGAGATTTCCAGAAGTACGTCTCGCCGGAACTTATCGGGACGATCGC
AAGGATCTGCGTCGTGATGAACCGAGATTTCCAGGACGAACTGAGAAACT
TCGTGCGAGCATTTGGGGGACCGGTTGCTGACGAAATGGTGGGGAACTGC
GAAATGCTCTCCCTCTCGCCTGACGGTTTCATGGTGCGATCGGAGGCGAA
CCCAGACAAGCCGGTGTCGATAGCCTTCTCCAAGGAATGCCAGTCCGCAT
CGGACTTCCAGAAGCAAATCCTGTTGGTCAGTGAGCGGGCCATGGCGATT
GCGTGAGACGAACTGAGAAACTTCGTGCGAGCATTTGGGGGACCGGTTGC
TGACGAAATGGTGGGGAACTGCGAAATGCTCTCCCTCTCGCCTGACGGTT
TCATGGTGCGATCGGAGGCGAACCCAGACAAGCCGGTGTCGATAGCCTTC
TCCAAGGAATGCCAGTCCGCATCGGACTTCCAGAAGCAAATCCTGTTGGT
CAGTGAGCGGGCCATGGCGATTGCGTGA back to top
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