mRNA_E-siliculosus-1a_F_contig1148.960.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1148.960.1
Unique NamemRNA_E-siliculosus-1a_F_contig1148.960.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1148.960.1 vs. uniprot
Match: D7FVK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK2_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 2.580e-12
Identity = 33/44 (75.00%), Postives = 35/44 (79.55%), Query Frame = 3 
Query:  138 GKRIAVLGAQGATPLHVAAEKGNLEVVKVLMHAGADVNSRMPNG 269
            G  +    AQGATPLH AAEKGNLEV KV MHAGADVNSRMP+G
Sbjct:    6 GASVVATSAQGATPLHFAAEKGNLEVAKV-MHAGADVNSRMPSG 48
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BLAST of mRNA_E-siliculosus-1a_F_contig1148.960.1 vs. uniprot
Match: D7FVK3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 5.800e-9
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 DHPGVVSILLSKGASVSATNDDGNTALHLSAFKGSLV 111
            DHP VVSILLSKGASVSA ND+GNTALHLSAF G +V
Sbjct:   59 DHPSVVSILLSKGASVSAINDEGNTALHLSAFAGYVV 95
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BLAST of mRNA_E-siliculosus-1a_F_contig1148.960.1 vs. uniprot
Match: A0A6H5L1C9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1C9_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.560e-8
Identity = 33/41 (80.49%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 DHPGVVSILL-SKGASVSATNDDGNTALHLSAFKGSLVVTK 120
            DHPGVVSILL SKGAS SATNDDGNTAL  S FK + VVTK
Sbjct:   26 DHPGVVSILLLSKGASASATNDDGNTALRFSVFKRNPVVTK 66
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1148.960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FVK2_ECTSI2.580e-1275.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FVK3_ECTSI5.800e-983.78EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5L1C9_9PHAE2.560e-880.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1148contigE-siliculosus-1a_F_contig1148:2219..2488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size150
Model size272
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.G
EggNOG OGsCOG0666@1,KOG4177@2759
EggNOG free text desc.response to abiotic stimulus
Seed eggNOG ortholog2880.D7FVK3
Seed ortholog evalue3.1e-08
Seed ortholog score63.5
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927661.3250039-CDS-E-siliculosus-1a_F_contig1148:2218..23681622927661.3250039-CDS-E-siliculosus-1a_F_contig1148:2218..2368Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1148 2219..2368 +
1696318628.8544679-CDS-E-siliculosus-1a_F_contig1148:2218..23681696318628.8544679-CDS-E-siliculosus-1a_F_contig1148:2218..2368Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1148 2219..2368 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927661.3357997-UTR-E-siliculosus-1a_F_contig1148:2368..24881622927661.3357997-UTR-E-siliculosus-1a_F_contig1148:2368..2488Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1148 2369..2488 +
1696318628.864267-UTR-E-siliculosus-1a_F_contig1148:2368..24881696318628.864267-UTR-E-siliculosus-1a_F_contig1148:2368..2488Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1148 2369..2488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1148.960.1prot_E-siliculosus-1a_F_contig1148.960.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1148 2219..2368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1148.960.1

>prot_E-siliculosus-1a_F_contig1148.960.1 ID=prot_E-siliculosus-1a_F_contig1148.960.1|Name=mRNA_E-siliculosus-1a_F_contig1148.960.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=50bp
DHPGVVSILLSKGASVSATNDDGNTALHLSAFKGSLVVTKMSLKAGASV*
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mRNA from alignment at E-siliculosus-1a_F_contig1148:2219..2488+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1148.960.1 ID=mRNA_E-siliculosus-1a_F_contig1148.960.1|Name=mRNA_E-siliculosus-1a_F_contig1148.960.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=270bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1148:2219..2488+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GATCACCCGGGCGTTGTCAGCATCCTACTTAGCAAGGGAGCGAGTGTTTC
AGCTACCAATGATGACGGCAATACCGCGTTGCATCTTTCGGCCTTCAAGG
GAAGCCTGGTCGTGACCAAAATGTCGCTCAAGGCAGGGGCAAGCGTATAG
CAGTTCTGGGTGCTCAGGGTGCCACACCGCTTCACGTCGCAGCAGAGAAA
GGGAATTTGGAGGTGGTGAAAGTGTTAATGCACGCAGGCGCTGACGTAAA
CAGCCGCATGCCCAACGGAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1148:2219..2488+

>mRNA_E-siliculosus-1a_F_contig1148.960.1 ID=mRNA_E-siliculosus-1a_F_contig1148.960.1|Name=mRNA_E-siliculosus-1a_F_contig1148.960.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=300bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1148:2219..2488+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GATCACCCGGGCGTTGTCAGCATCCTACTTAGCAAGGGAGCGAGTGTTTC
AGCTACCAATGATGACGGCAATACCGCGTTGCATCTTTCGGCCTTCAAGG
GAAGCCTGGTCGTGACCAAAATGTCGCTCAAGGCAGGGGCAAGCGTATAG
GATCACCCGGGCGTTGTCAGCATCCTACTTAGCAAGGGAGCGAGTGTTTC
AGCTACCAATGATGACGGCAATACCGCGTTGCATCTTTCGGCCTTCAAGG
GAAGCCTGGTCGTGACCAAAATGTCGCTCAAGGCAGGGGCAAGCGTATAG
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