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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1147.958.1 vs. uniprot
Match: D7G3R6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3R6_ECTSI) HSP 1 Score: 618 bits (1594), Expect = 4.010e-212 Identity = 322/355 (90.70%), Postives = 328/355 (92.39%), Query Frame = 1
Query: 151 IVNMIEETPMNATALLLQTRTSSTDSSVSPKPRWSKGVPPTCENTEPNKPAPAALVSSTSSCDDDGRSPNTTKLLLESHTSTDGHISPKPRWTRGNPNTETDTGADGDKLDESXXXXXXXXXXXXXXXXXEEPLPTSLRPGGRSSNASSSSGGDRKWCMAWKWLLEDEAASEKRLQRPTGDEPVVLPKLIDAERELLCRNVELRLLEVGRQSTDIPALVEEYLRFMFLRKRLEGMLTLDPSPLVDDVWQAHITSDREYAAFCERTFGGEGLECGLPHREADASQPMLYENTVGAYEHFFGAVAPFEWWPAPAVVAGAACTALDGKGEEEEGPVDVSGRRTAFVRTEERKFHFAEE 1215
+VNMIEETPMNATALLLQTRTSSTDSSVSPKPRWSKG PPTCENTEPNKPAPAA VSSTSSCDDD RSPNTTKLLLESHTSTDGHISPKPRWTRGNPNTE DTGADGDKLDES XXXXXXXXX EEPLPTSLRPGGRSSNAS SS GDRKW MAW+WLLEDEAASE RLQRPT +P VLPKL+DAER+LLCRNVELRLLEVGR STDIPALVEEYLRFMFLRKRLEGMLTLDPSPLVD VWQAHITSDREYAAFCERTFGGEGLECG+PHRE DASQPMLYENTVGAYEHFFGAVAPFE WPAPAVV G ACTALDGKGEEEE PVDVSGRRTAFVRTEERK HFAEE
Sbjct: 1 MVNMIEETPMNATALLLQTRTSSTDSSVSPKPRWSKGAPPTCENTEPNKPAPAAPVSSTSSCDDDERSPNTTKLLLESHTSTDGHISPKPRWTRGNPNTEPDTGADGDKLDESSXXXXXXXXXASSEDGREEPLPTSLRPGGRSSNASGSSCGDRKWYMAWRWLLEDEAASEPRLQRPTEADPAVLPKLMDAERQLLCRNVELRLLEVGRHSTDIPALVEEYLRFMFLRKRLEGMLTLDPSPLVDVVWQAHITSDREYAAFCERTFGGEGLECGVPHREVDASQPMLYENTVGAYEHFFGAVAPFECWPAPAVVVGGACTALDGKGEEEEAPVDVSGRRTAFVRTEERKVHFAEE 355
BLAST of mRNA_E-siliculosus-1a_F_contig1147.958.1 vs. uniprot
Match: UPI0003A3859B (TIGR04222 domain-containing membrane protein n=1 Tax=Xanthomonas maliensis TaxID=1321368 RepID=UPI0003A3859B) HSP 1 Score: 58.2 bits (139), Expect = 6.650e-5 Identity = 42/113 (37.17%), Postives = 52/113 (46.02%), Query Frame = 1
Query: 802 LVEEYLRFMFLRKRLEGMLTLDPSPLVDDVWQAHITSDREY-AAFCERTFGGEGLECGLPHREADASQ--PML---YENTVGAYEHFFGAVAPFEWWPAPAVVAGAACTALDG 1122
L++EY RF FL + + PSPLVD VW AH+T REY FC + L+ L H + P L Y+ T+ Y H FG P WP P A A DG
Sbjct: 55 LLDEYRRFCFLACSSDEEAS--PSPLVDQVWHAHLTDTREYWQRFCPQI-----LQATLHHHPGSGADDAPRLRAQYQRTLERYRHHFGEP-PLACWPPPRPTAPPVAPAADG 159
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Model size | 3049 |
| Start | 1 |
| Stop | 1 |
| Cds size | 1062 |
| Exons | 3 |
| Ec32 ortholog | Ec-03_000100.1 |
| Ec32 ortholog description | conserved unknown protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622927661.1097262-UTR-E-siliculosus-1a_F_contig1147:18671..18830 | 1622927661.1097262-UTR-E-siliculosus-1a_F_contig1147:18671..18830 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1147 18672..18830 + |
| 1696318628.7155688-UTR-E-siliculosus-1a_F_contig1147:18671..18830 | 1696318628.7155688-UTR-E-siliculosus-1a_F_contig1147:18671..18830 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1147 18672..18830 + |
| 1622927661.1751375-UTR-E-siliculosus-1a_F_contig1147:21089..22917 | 1622927661.1751375-UTR-E-siliculosus-1a_F_contig1147:21089..22917 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1147 21090..22917 + |
| 1696318628.765315-UTR-E-siliculosus-1a_F_contig1147:21089..22917 | 1696318628.765315-UTR-E-siliculosus-1a_F_contig1147:21089..22917 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1147 21090..22917 + |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1147.958.1 >prot_E-siliculosus-1a_F_contig1147.958.1 ID=prot_E-siliculosus-1a_F_contig1147.958.1|Name=mRNA_E-siliculosus-1a_F_contig1147.958.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=354bp
MIEETPMNATALLLQTRTSSTDSSVSPKPRWSKGVPPTCENTEPNKPAPA ALVSSTSSCDDDGRSPNTTKLLLESHTSTDGHISPKPRWTRGNPNTETDT GADGDKLDESSSSSSTTATVASSDDGREEPLPTSLRPGGRSSNASSSSGG DRKWCMAWKWLLEDEAASEKRLQRPTGDEPVVLPKLIDAERELLCRNVEL RLLEVGRQSTDIPALVEEYLRFMFLRKRLEGMLTLDPSPLVDDVWQAHIT SDREYAAFCERTFGGEGLECGLPHREADASQPMLYENTVGAYEHFFGAVA PFEWWPAPAVVAGAACTALDGKGEEEEGPVDVSGRRTAFVRTEERKFHFA EEG* back to topmRNA from alignment at E-siliculosus-1a_F_contig1147:18672..22917+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1147.958.1 ID=mRNA_E-siliculosus-1a_F_contig1147.958.1|Name=mRNA_E-siliculosus-1a_F_contig1147.958.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4246bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1147:18672..22917+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) CAGGTGTCCCGCCTCGCAAGCCCTTTTGCACCCAGTGCTGTCTCTCACTC
TCTCCTCTTTCCGAAGTCTTTCGCTCTGCTTTCTCTTCTCACCACGCTAT
CATCTTCTCCAGCAAGCAGCGCACGCAACCAAACACAAAGCAAGAGAGAG
ATCGTCAACATGATCGAAGAAACGCCGATGAACGCCACGGCGCTCCTTCT
TCAAACCCGCACAAGCAGCACCGACAGCAGCGTCTCTCCCAAGCCGCGTT
GGTCGAAGGGCGTCCCTCCCACGTGCGAAAACACAGAACCGAATAAGCCG
GCTCCCGCTGCACTTGTTTCATCTACGTCCTCGTGTGACGACGACGGGCG
TTCGCCGAACACCACCAAGCTCTTACTTGAGAGCCACACCAGCACCGACG
GCCACATTTCGCCCAAGCCGCGCTGGACGCGAGGAAACCCGAACACCGAA
ACCGACACTGGAGCTGACGGTGATAAGCTGGACGAGTCCTCCTCCTCTTC
CTCTACCACTGCCACAGTCGCATCATCGGATGACGGACGAGAGGAACCCT
TGCCGACCTCGCTTCGACCCGGCGGCCGCAGCAGCAACGCCTCCAGCAGC
AGCGGTGGCGACCGCAAGTGGTGCATGGCCTGGAAGTGGTTGCTCGAGGA
CGAGGCTGCTAGCGAGAAAAGACTGCAGAGGCCAACCGGGGACGAGCCTG
TTGTGCTGCCGAAACTGATCGACGCCGAGCGGGAGCTGCTGTGCCGCAAC
GTGGAGCTCAGGTTACTGGAGGTAAGCGTAGCCGCACAGTGGTACAGTAC
AGCAGTATGCACAGGGACTTCAGTAGCACCACAGCAGTCTCCGCGCTTGT
TCTTTTCTTGCTTCATGTGCAGAGTTGTCGGATCTTCGTTTCGCGCCGAA
CGGATTTTTCCTCTTTTTGCTACTACTCCATCCATCACTACCTTCCTACA
ACGCAGTTGATGTATGTACCGACCAACACCTCCGACACGGGCGGAGCTTT
GGCTCGTGGCCAAAGCTACTCCATCATGCTGTAGCATCCCGACGCACGTG
AAAAAAAGAGAGGTTCGTCACAAAACGGTGTTTTCTCATTTTCGGGGCAG
CACCAGTTCTTTTTCAGGAAGTGTTCATCTCGATGTTACAGAAAAAACTG
TACCCGTTCGAGATCATGCCTTTTGCGTCATCTGCTCAAAACAGCATCCT
ACGCCGGGAAGACGTGGGCTGGTGCGGTGTCGATTTACTCTATGCTGCTA
AGTTATTCTGAAAGACATGCCGCCACTGCAATATCGAGATCCACGTGTCG
AACGAGGATGCTTGCCTGCCCACCTATGTATACAACGCCGAATCGCAAGT
GTTCGAATGTTTACTTCAACACCCGCCTCAAAATATTTTCCCAACTCTTA
TGACTGGTACCTCAGGTCGGTCGGCAATCTACGGACATCCCCGCCCTGGT
TGAGGAATACCTCCGGTTCATGTTCCTTCGGAAAAGGCTCGAGGGCATGC
TCACTCTCGACCCTTCCCCTCTGGTGGACGATGTCTGGCAGGCGCACATC
ACGTCGGACAGGTGTGTGTGTGCGGTAAAACAAATTGATGGTCAGTACGA
TGGTATACATTTTTTCCGGCCTTGCCTCACCGCGGTCATTCTTGTGCGGT
AATATCACTTAGTCGAGTAGCGGTTGCAGGCGTGCTACAGCGCCGAAAGC
GCCATAAAATCGCAGGGTTCATCAAGAATCTAGACGATTAGCAGCGCGTT
GCTTGCAAAAGCATTTTCTCGACTCCCTTTCCCCTCCGTTGGCTATCCGA
AAACGCGTGTGGAAGAGACGCCCTCCCTCTCCTTCTCCCTACATTGAAGA
TGCAGGGAACAACGACATGCAGCCCCGCCACTACTCGTTGCAATGCCCCC
AGCACAGCATCATCCCCCACCACCCCTTTTCATATTTCCACGGTACACCC
TGCATGAGAAAATAAAAAGGCGCTCTTGCCACCAAAACGAAACCCACATC
AACTGGGGTGGCGGAGCCAGCACTAAAATACACCCGCTCCCCCCACGTTC
GGCCTTTGTCATGTCATGCGTGTTCTCCTTGGTGAACCTCAACAAAACCC
GAACAACAACCCAGGGAGTACGCCGCGTTCTGCGAGCGCACGTTCGGGGG
GGAGGGGCTAGAGTGCGGGTTACCGCACAGGGAGGCCGACGCCTCGCAGC
CCATGCTGTACGAGAACACGGTCGGCGCTTACGAGCACTTCTTCGGCGCC
GTTGCCCCTTTTGAGTGGTGGCCTGCCCCCGCGGTGGTTGCCGGAGCTGC
GTGTACCGCGCTGGATGGCAAGGGAGAGGAAGAAGAGGGACCGGTGGATG
TCTCGGGAAGGCGAACCGCTTTCGTCCGCACGGAGGAGAGGAAGTTTCAT
TTTGCCGAGGAAGGCTGAGCCCAGCAATTGTCGTGGTATAATTGTACACG
TGCAGAGGAGATTCTTAGCGTGTAGAATTGGCTATTATTTTTTTATATTG
TTCACTTTATTCGGTATATGCATGCTGATGGAAGTCGACTTCTTCAAGGG
TGAATGAACGGCTGGAGCAAAGGGAGATTGATGGGACCAGGCCGCAGTGT
AGTCGTGCAGAATTGTTTCGTTGCCGTGCTGGCTACGAACAGTTGACAAG
TTTCGCTGTGAAAAGGAGCCATAATCGTAGACACTTGCAGTCTACCTTCC
TTAACTTTCATATGCATACAAGAAGCTGACGCGCGCCAGGAGGTCACCGA
CTTCCAATCGCAATGGCCGTGTCTGTCACGTACCTGTACTATACGGATAC
TTACATACATTGAAATTGTTTTTGCCCCATCTGGGCATTTTGTCGTCTTC
GACGTGGTGACCGATTGTTATTGTGCACGGATTCTTGTTCTTGGGGTGTT
TGGTTGGTTGTTGGGTGTGATTGCGCCGTGGCATTTCTCGAGTCGTAGGT
GGTACAGTAGATCGATACAATACATATTGTAGGCGTTGTGGAACCCTTCC
CCACATTTCCTCCATCCGTGGCATGTCCTGAGTTGATGCTTGTTATCGGT
GTGAAGAGGTAGGGGGATTGTCGATGCTGCGCATGGAGTCTAGCCGTTTG
GAAGTATTTTTCACGGCTGGTTGTGGGCAGACTACAGAACGCGCCACCAC
TTAAAAAGCTCTATTAATAGTTTCGGCCGAGGCTGGGGTTCTTACCGTAT
TCCTACATTAGGGTCATGCTACGAATGGCCGTTATATTGGTTTTTGTGTA
GGCTTTCTTAACCGACCTCACGAAAGGAGCTCAAGCTCTTAAATTTTGTT
TTGTTTTAGGTTCGATTTCGTGAGTTCTTGAGTGAGTGGCGCGTTCTGTA
TGTTATGTTTCGTTGTTGAGTTCGTCCTTGTTTTGTTATTGATGTGATAT
TTTGTTGTTGACTCCGTCCTTGTGATGTGATGGGGGAAGGGTGTGCGGAG
AGTTGGTGGTGGATATGTTTTTTGCTTCATCGTTGACGGCGTCCTCGTTG
TGGAAATGGCGGGGGGGTTGTTGGTCCAAGCCTCTTACGTACTATTCGTC
TCGAGGCATGGTCCGGGCTACAGTAGTGGTGGGTATTTCGTTGTTGACTT
CGTCCTTGTTTTTTATGTTTCGGGGGCAGGGGGGCGGGGTCGTTCGATTC
TTCACATGTATTCGTTTGCAGGAGTGCTTTGGGGCTGTATAGTAGGGGTA
CCATGGTACATTTAACGGTGCGGGAAGTTGGAGTCTTAATCAGGAGCGTG
TGCAGCAGCGTGTGCTCTTCATGCTAGCGGTGCAATACTTTTGGGGGTTG
GATCAATTTTTTCGTTTTCGATGTTTCTCGCGACATGTAATGTCTCGTCG
AGCCTTGTTTTGTCGGGACGTGAATCGCGCAGTCAGTGGTTGGAGCTCTG
TTGGTTCGCGTGGTATGTATATCTGGTACATTCAAGACTAGGGTTCGGTG
TGCGCATCGGTTGGATCGTGATTTTTTATAGATTTACGGTCTTGTACAGT
ACGCAATATTATTTATGACCGGCCGGTGGCAAAGGCCGGAAGTACCAAAT
ATGGTACGTGCACTATCGTTGTTGGTTGCTGGCAACGAATGAATGAATGT
GATTTGATTGGAGTTGTTTCGTGGTACACAAAGAAGGGTCGGTCGGGGGT
GGGTACTCAAACTGGCGTCCCATGCATCTTGCTATCTTGTCTTCAACGGT
TTAGGGAATGAAAGTCAACGACGATGCGATTACAACTACAGTCAAC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1147:18672..22917+ >mRNA_E-siliculosus-1a_F_contig1147.958.1 ID=mRNA_E-siliculosus-1a_F_contig1147.958.1|Name=mRNA_E-siliculosus-1a_F_contig1147.958.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2124bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1147:18672..22917+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) ATGATCGAAGAAACGCCGATGAACGCCACGGCGCTCCTTCTTCAAACCCG CACAAGCAGCACCGACAGCAGCGTCTCTCCCAAGCCGCGTTGGTCGAAGG GCGTCCCTCCCACGTGCGAAAACACAGAACCGAATAAGCCGGCTCCCGCT GCACTTGTTTCATCTACGTCCTCGTGTGACGACGACGGGCGTTCGCCGAA CACCACCAAGCTCTTACTTGAGAGCCACACCAGCACCGACGGCCACATTT CGCCCAAGCCGCGCTGGACGCGAGGAAACCCGAACACCGAAACCGACACT GGAGCTGACGGTGATAAGCTGGACGAGTCCTCCTCCTCTTCCTCTACCAC TGCCACAGTCGCATCATCGGATGACGGACGAGAGGAACCCTTGCCGACCT CGCTTCGACCCGGCGGCCGCAGCAGCAACGCCTCCAGCAGCAGCGGTGGC GACCGCAAGTGGTGCATGGCCTGGAAGTGGTTGCTCGAGGACGAGGCTGC TAGCGAGAAAAGACTGCAGAGGCCAACCGGGGACGAGCCTGTTGTGCTGC CGAAACTGATCGACGCCGAGCGGGAGCTGCTGTGCCGCAACGTGGAGCTC AGGTTACTGGAGATGATCGAAGAAACGCCGATGAACGCCACGGCGCTCCT TCTTCAAACCCGCACAAGCAGCACCGACAGCAGCGTCTCTCCCAAGCCGC GTTGGTCGAAGGGCGTCCCTCCCACGTGCGAAAACACAGAACCGAATAAG CCGGCTCCCGCTGCACTTGTTTCATCTACGTCCTCGTGTGACGACGACGG GCGTTCGCCGAACACCACCAAGCTCTTACTTGAGAGCCACACCAGCACCG ACGGCCACATTTCGCCCAAGCCGCGCTGGACGCGAGGAAACCCGAACACC GAAACCGACACTGGAGCTGACGGTGATAAGCTGGACGAGTCCTCCTCCTC TTCCTCTACCACTGCCACAGTCGCATCATCGGATGACGGACGAGAGGAAC CCTTGCCGACCTCGCTTCGACCCGGCGGCCGCAGCAGCAACGCCTCCAGC AGCAGCGGTGGCGACCGCAAGTGGTGCATGGCCTGGAAGTGGTTGCTCGA GGACGAGGCTGCTAGCGAGAAAAGACTGCAGAGGCCAACCGGGGACGAGC CTGTTGTGCTGCCGAAACTGATCGACGCCGAGCGGGAGCTGCTGTGCCGC AACGTGGAGCTCAGGTTACTGGAGGTCGGTCGGCAATCTACGGACATCCC CGCCCTGGTTGAGGAATACCTCCGGTTCATGTTCCTTCGGAAAAGGCTCG AGGGCATGCTCACTCTCGACCCTTCCCCTCTGGTGGACGATGTCTGGCAG GCGCACATCACGTCGGACAGGTCGGTCGGCAATCTACGGACATCCCCGCC CTGGTTGAGGAATACCTCCGGTTCATGTTCCTTCGGAAAAGGCTCGAGGG CATGCTCACTCTCGACCCTTCCCCTCTGGTGGACGATGTCTGGCAGGCGC ACATCACGTCGGACAGGGAGTACGCCGCGTTCTGCGAGCGCACGTTCGGG GGGGAGGGGCTAGAGTGCGGGTTACCGCACAGGGAGGCCGACGCCTCGCA GCCCATGCTGTACGAGAACACGGTCGGCGCTTACGAGCACTTCTTCGGCG CCGTTGCCCCTTTTGAGTGGTGGCCTGCCCCCGCGGTGGTTGCCGGAGCT GCGTGTACCGCGCTGGATGGCAAGGGAGAGGAAGAAGAGGGACCGGTGGA TGTCTCGGGAAGGCGAACCGCTTTCGTCCGCACGGAGGAGAGGAAGTTTC ATTTTGCCGAGGAAGGCTGAGGAGTACGCCGCGTTCTGCGAGCGCACGTT CGGGGGGGAGGGGCTAGAGTGCGGGTTACCGCACAGGGAGGCCGACGCCT CGCAGCCCATGCTGTACGAGAACACGGTCGGCGCTTACGAGCACTTCTTC GGCGCCGTTGCCCCTTTTGAGTGGTGGCCTGCCCCCGCGGTGGTTGCCGG AGCTGCGTGTACCGCGCTGGATGGCAAGGGAGAGGAAGAAGAGGGACCGG TGGATGTCTCGGGAAGGCGAACCGCTTTCGTCCGCACGGAGGAGAGGAAG TTTCATTTTGCCGAGGAAGGCTGA back to top
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