mRNA_E-siliculosus-1a_F_contig11443.949.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11443.949.1
Unique NamemRNA_E-siliculosus-1a_F_contig11443.949.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11443.949.1 vs. uniprot
Match: D8LSM6_ECTSI (GTPase Der n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSM6_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.420e-10
Identity = 29/35 (82.86%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:  328 DRVLVDRIQSDGHACVVVCNKWDLMEDEDDPTYNK 432
            DRVL DRIQSDG ACVVVCNKWDL+ED+DD +YNK
Sbjct:  497 DRVLADRIQSDGRACVVVCNKWDLVEDKDDSSYNK 531
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11443.949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSM6_ECTSI1.420e-1082.86GTPase Der n=2 Tax=Ectocarpus TaxID=2879 RepID=D8L... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11443contigE-siliculosus-1a_F_contig11443:476..1571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size285
Model size432
Exons2
Hectar predicted targeting categorysignal peptide
BRITEko00000,ko01000,ko03009,ko03016
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.D
EggNOG OGsCOG0486@1,KOG1191@2759
EggNOG free text desc.GTP binding
KEGG ReactionR08701
KEGG koko:K03650,ko:K03977
KEGG rclassRC00053,RC00209,RC00870
Seed eggNOG ortholog2880.D8LSM6
Seed ortholog evalue5.4e-09
Seed ortholog score67.0
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11443.949.1prot_E-siliculosus-1a_F_contig11443.949.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11443 476..1424 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927658.7348895-CDS-E-siliculosus-1a_F_contig11443:475..5801622927658.7348895-CDS-E-siliculosus-1a_F_contig11443:475..580Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11443 476..580 -
1696318627.5272315-CDS-E-siliculosus-1a_F_contig11443:475..5801696318627.5272315-CDS-E-siliculosus-1a_F_contig11443:475..580Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11443 476..580 -
1622927658.750505-CDS-E-siliculosus-1a_F_contig11443:1244..14241622927658.750505-CDS-E-siliculosus-1a_F_contig11443:1244..1424Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11443 1245..1424 -
1696318627.540653-CDS-E-siliculosus-1a_F_contig11443:1244..14241696318627.540653-CDS-E-siliculosus-1a_F_contig11443:1244..1424Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11443 1245..1424 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927658.7708454-UTR-E-siliculosus-1a_F_contig11443:1424..15711622927658.7708454-UTR-E-siliculosus-1a_F_contig11443:1424..1571Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11443 1425..1571 -
1696318627.548677-UTR-E-siliculosus-1a_F_contig11443:1424..15711696318627.548677-UTR-E-siliculosus-1a_F_contig11443:1424..1571Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11443 1425..1571 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11443.949.1

>prot_E-siliculosus-1a_F_contig11443.949.1 ID=prot_E-siliculosus-1a_F_contig11443.949.1|Name=mRNA_E-siliculosus-1a_F_contig11443.949.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=95bp
MTSMQPFSALAFRIITVAKALPGMHHVLGLGKYITPTGAHSNRRWSAGSP
QPRHSSDAQMDRVLVDRIQSDGHACVVVCNKWDLMEDEDDPTYNK
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mRNA from alignment at E-siliculosus-1a_F_contig11443:476..1571-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11443.949.1 ID=mRNA_E-siliculosus-1a_F_contig11443.949.1|Name=mRNA_E-siliculosus-1a_F_contig11443.949.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1096bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11443:476..1571- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGCATGTCGCTCGGTGGAGACGGGTGCTGTAGGTCGATCATCATGATGTG
ATGTTCCCGTCCAATCTACGTCAGCAGAATGGTTGTGACGAACTAGCTCC
TTCGCGTGTGTCAAACGTTTGAGTTCCCTGTTTTCGGTGAGTCTCGGATG
ACGTCGATGCAGCCGTTCAGTGCACTAGCGTTCCGTATTATTACCGTTGC
CAAAGCCCTGCCCGGGATGCACCACGTCCTGGGACTGGGAAAATACATCA
CGCCTACCGGAGCACATAGCAACCGAAGATGGAGCGCAGGTTCGCCACAA
CCGAGGCACTCAAGCGACGCACAGATGGTCAGTGGTACACACGTTGCAAG
GGTACGTTGCGCTCGTTCAGGTGAAAGAATGCCTGCAGTCTCCATGAGTC
GTACACATACACCTCCTCGATTGTTCACACCAAGGGTGTTGCGGCTGATA
ACCACCGCGGATTGTAATCACCCATGTTGGACACTCTGTCCCATCCATCA
GAGCTCTTCAATATCGCGGACGCAGCAGACCTCAACAAAGCAAGAGGGTC
ACTCCCATAAGGAAGTGCGCATGGAGAAAAATATTTCACGTGTACTAGGA
GACAGCGTTCTCCGGTCAAACTCTGCAAGCCCAGTTTCACTTGATTCCGC
AGCACGCTTCCATTGTTTGCAGGCAGCAAGCGTGGCCGCCTTGGTTTGTG
TGCAGTTTCTCTGTTTGTGTTGCAGAGGTTGGTGCGTACGCCATTCCGAC
GCAAAGCAAACCATGCACGGAAGGGAGTCAGTCCGGATAGCGAGACCATC
TGTGGATCAAATCTCATGTTACCGAGCCTTTTTAGCAGCCATTGCTCGTG
TGCATTTTTCGGGAAACTGAAGCACTGCGGGTTTTGTTTTGAGAGGCGAC
CAATCTGGCTTGACTACGGTGGTAAAATGGAATGGCTGCGCATGATTTCA
TCCTTGCCCCCCGCGACGCGTTGGCTCGCCTTTTCAAACAGGACCGAGTC
TTGGTGGACCGCATCCAGTCGGACGGTCATGCGTGCGTTGTGGTGTGCAA
CAAGTGGGATCTGATGGAAGACGAGGACGACCCCACCTACAACAAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11443:476..1571-

>mRNA_E-siliculosus-1a_F_contig11443.949.1 ID=mRNA_E-siliculosus-1a_F_contig11443.949.1|Name=mRNA_E-siliculosus-1a_F_contig11443.949.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=570bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11443:476..1571- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACGTCGATGCAGCCGTTCAGTGCACTAGCGTTCCGTATTATTACCGT
TGCCAAAGCCCTGCCCGGGATGCACCACGTCCTGGGACTGGGAAAATACA
TCACGCCTACCGGAGCACATAGCAACCGAAGATGGAGCGCAGGTTCGCCA
CAACCGAGGCACTCAAGCGACGCACAGATGATGACGTCGATGCAGCCGTT
CAGTGCACTAGCGTTCCGTATTATTACCGTTGCCAAAGCCCTGCCCGGGA
TGCACCACGTCCTGGGACTGGGAAAATACATCACGCCTACCGGAGCACAT
AGCAACCGAAGATGGAGCGCAGGTTCGCCACAACCGAGGCACTCAAGCGA
CGCACAGATGGACCGAGTCTTGGTGGACCGCATCCAGTCGGACGGTCATG
CGTGCGTTGTGGTGTGCAACAAGTGGGATCTGATGGAAGACGAGGACGAC
CCCACCTACAACAAGGACCGAGTCTTGGTGGACCGCATCCAGTCGGACGG
TCATGCGTGCGTTGTGGTGTGCAACAAGTGGGATCTGATGGAAGACGAGG
ACGACCCCACCTACAACAAG
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