mRNA_E-siliculosus-1a_F_contig11366.902.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11366.902.1
Unique NamemRNA_E-siliculosus-1a_F_contig11366.902.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11366.902.1 vs. uniprot
Match: D8LJP6_ECTSI (Zn-finger (Ran-binding)-3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJP6_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 2.080e-32
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 EWHMLVQAAKTPSAYLSSFHAFVLANALRRPILVYGDRFVRGRNGEPYAPSDVRG 165
            EWHMLVQAAKTPSAYLSSFHAFVLANALRRPILVYGDRFVRGRNGEPYAPSDVRG
Sbjct:    9 EWHMLVQAAKTPSAYLSSFHAFVLANALRRPILVYGDRFVRGRNGEPYAPSDVRG 63
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BLAST of mRNA_E-siliculosus-1a_F_contig11366.902.1 vs. uniprot
Match: A0A6H5JBZ3_9PHAE (OTU domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBZ3_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.700e-28
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 1 
Query:    1 EWHMLVQAAKTPSAYLSSFHAFVLANALRRPILVYGDRFVRGRNGEPYAPSDVRG 165
            EWHMLVQAAKTPSAYLSSFHAFVLAN LRRPILVYGDRFVRGRNGEPYAPSDVRG
Sbjct:  110 EWHMLVQAAKTPSAYLSSFHAFVLANVLRRPILVYGDRFVRGRNGEPYAPSDVRG 164
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BLAST of mRNA_E-siliculosus-1a_F_contig11366.902.1 vs. uniprot
Match: D7G8I7_ECTSI (OTU domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8I7_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 3.070e-14
Identity = 34/56 (60.71%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 EWHMLVQAAKTPSAYLSSFHAFVLANALRRPILVYGDRFVRG-RNGEPYAPSDVRG 165
            EW ML++A KTPSA+LSSFH FV A+ LRRPI+VYG+ +V G  N E + PSD+ G
Sbjct:  167 EWRMLMEAVKTPSAHLSSFHVFVFAHVLRRPIVVYGETYVYGANNSEAFVPSDMPG 222
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BLAST of mRNA_E-siliculosus-1a_F_contig11366.902.1 vs. uniprot
Match: A0A6H5L7A1_9PHAE (OTU domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A1_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 2.050e-13
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 EWHMLVQAAKTPSAYLSSFHAFVLANALRRPILVYGDRFVRG-RNGEPYAPSDVRG 165
            EW M+++A KTPSA+LSSFH FVLA+ LRRPI+VYG   V G  N E + PSD+ G
Sbjct:  196 EWRMVMEAVKTPSAHLSSFHVFVLAHVLRRPIVVYGKNHVYGANNSEAFVPSDMPG 251
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BLAST of mRNA_E-siliculosus-1a_F_contig11366.902.1 vs. uniprot
Match: UPI0008F9C5DB (ubiquitin thioesterase trabid n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9C5DB)

HSP 1 Score: 52.8 bits (125), Expect = 1.480e-6
Identity = 24/47 (51.06%), Postives = 29/47 (61.70%), Query Frame = 1 
Query:    1 EWHMLVQAAKTPSAYLSSFHAFVLANALRRPILVYGDRFVRGRNGEP 141
            EW  LV  A  P A L   H F LA+ LRRPI+VYG ++V+   GEP
Sbjct:  468 EWASLVSLASQPGASLEQLHIFALAHILRRPIIVYGVKYVKSYRGEP 514
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BLAST of mRNA_E-siliculosus-1a_F_contig11366.902.1 vs. uniprot
Match: A0A3P7M4G3_DIBLA (OTU domain-containing protein n=1 Tax=Dibothriocephalus latus TaxID=60516 RepID=A0A3P7M4G3_DIBLA)

HSP 1 Score: 49.7 bits (117), Expect = 2.430e-6
Identity = 20/55 (36.36%), Postives = 32/55 (58.18%), Query Frame = 1 
Query:    1 EWHMLVQAAKTPSAYLSSFHAFVLANALRRPILVYGDRFVRGRNGEPYAPSDVRG 165
            +W  ++ AA+ P   L   H FVL + LRRP++VYG +++     EP   S+ +G
Sbjct:   38 DWRSVLDAARQPRGSLEQIHIFVLCHILRRPVIVYGVKYINNYRDEPIGISNFQG 92
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BLAST of mRNA_E-siliculosus-1a_F_contig11366.902.1 vs. uniprot
Match: A0A8I6SDI2_CIMLE (Ubiquitinyl hydrolase 1 n=1 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6SDI2_CIMLE)

HSP 1 Score: 51.2 bits (121), Expect = 5.190e-6
Identity = 23/46 (50.00%), Postives = 29/46 (63.04%), Query Frame = 1 
Query:    1 EWHMLVQAAKTPSAYLSSFHAFVLANALRRPILVYGDRFVRGRNGE 138
            +W  LV+ A  P A L   H F LA+ LRRP+LVYG +FV+   GE
Sbjct:  437 DWSALVKRATQPGASLQQLHVFALAHVLRRPVLVYGVKFVKSFRGE 482
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BLAST of mRNA_E-siliculosus-1a_F_contig11366.902.1 vs. uniprot
Match: A0A7R9S7V1_9CRUS (Hypothetical protein (Fragment) n=1 Tax=Argulus foliaceus TaxID=509924 RepID=A0A7R9S7V1_9CRUS)

HSP 1 Score: 51.2 bits (121), Expect = 5.190e-6
Identity = 21/46 (45.65%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 EWHMLVQAAKTPSAYLSSFHAFVLANALRRPILVYGDRFVRGRNGE 138
            EW  L+  A  P + L  FH FVLA+ L RPI+VYG+++++G +G+
Sbjct:  481 EWAKLLNGASIPGSSLEPFHIFVLAHILCRPIIVYGEKYIKGFHGD 526
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BLAST of mRNA_E-siliculosus-1a_F_contig11366.902.1 vs. uniprot
Match: A0A6A4JMS4_APOLU (Ubiquitinyl hydrolase 1 n=1 Tax=Apolygus lucorum TaxID=248454 RepID=A0A6A4JMS4_APOLU)

HSP 1 Score: 50.8 bits (120), Expect = 7.100e-6
Identity = 24/55 (43.64%), Postives = 31/55 (56.36%), Query Frame = 1 
Query:    1 EWHMLVQAAKTPSAYLSSFHAFVLANALRRPILVYGDRFVRGRNGEPYAPSDVRG 165
            +W  LV+ A  P A L   H F LA+ LRRPI+VYG +FV+   GE    +   G
Sbjct:  443 DWAALVKRATQPGASLQQLHVFALAHVLRRPIIVYGVKFVKSFRGEDLGYAGFEG 497
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BLAST of mRNA_E-siliculosus-1a_F_contig11366.902.1 vs. uniprot
Match: A0A023F2H3_TRIIF (Ubiquitinyl hydrolase 1 (Fragment) n=5 Tax=Triatominae TaxID=70999 RepID=A0A023F2H3_TRIIF)

HSP 1 Score: 50.4 bits (119), Expect = 9.710e-6
Identity = 23/55 (41.82%), Postives = 31/55 (56.36%), Query Frame = 1 
Query:    1 EWHMLVQAAKTPSAYLSSFHAFVLANALRRPILVYGDRFVRGRNGEPYAPSDVRG 165
            +W  LV  A  P A L   H F LA+ LRRP++VYG +FV+   GE    +  +G
Sbjct:  430 DWSSLVGRASQPGASLQQLHVFALAHVLRRPVIVYGVKFVKSFRGEDIGYAGFQG 484
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11366.902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJP6_ECTSI2.080e-32100.00Zn-finger (Ran-binding)-3 n=1 Tax=Ectocarpus silic... [more]
A0A6H5JBZ3_9PHAE1.700e-2898.18OTU domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G8I7_ECTSI3.070e-1460.71OTU domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L7A1_9PHAE2.050e-1360.71OTU domain-containing protein n=1 Tax=Ectocarpus s... [more]
UPI0008F9C5DB1.480e-651.06ubiquitin thioesterase trabid n=1 Tax=Bemisia taba... [more]
A0A3P7M4G3_DIBLA2.430e-636.36OTU domain-containing protein n=1 Tax=Dibothriocep... [more]
A0A8I6SDI2_CIMLE5.190e-650.00Ubiquitinyl hydrolase 1 n=1 Tax=Cimex lectularius ... [more]
A0A7R9S7V1_9CRUS5.190e-645.65Hypothetical protein (Fragment) n=1 Tax=Argulus fo... [more]
A0A6A4JMS4_APOLU7.100e-643.64Ubiquitinyl hydrolase 1 n=1 Tax=Apolygus lucorum T... [more]
A0A023F2H3_TRIIF9.710e-641.82Ubiquitinyl hydrolase 1 (Fragment) n=5 Tax=Triatom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11366contigE-siliculosus-1a_F_contig11366:329..496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size159
Model size168
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
BRITEko00000,ko01000,ko01002,ko04121
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.O
EC3.4.19.12
EggNOG OGsKOG4345@1,KOG4345@2759
EggNOG free text desc.protein deubiquitination involved in ubiquitin-dependent protein catabolic process
GOsGO:0003674,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006928,GO:0006996,GO:0007010,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009653,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0016043,GO:0016477,GO:0016579,GO:0016787,GO:0019538,GO:0019783,GO:0019941,GO:0021551,GO:0022603,GO:0022604,GO:0023051,GO:0023056,GO:0030111,GO:0030163,GO:0030177,GO:0031593,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0035523,GO:0036211,GO:0036459,GO:0040011,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051179,GO:0051603,GO:0051674,GO:0060322,GO:0060828,GO:0065007,GO:0070011,GO:0070013,GO:0070530,GO:0070536,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0071947,GO:0090263,GO:0101005,GO:0140030,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1990168
KEGG koko:K11860,ko:K11862
Preferred nameZRANB1
Seed eggNOG ortholog2880.D8LJP6
Seed ortholog evalue4.5e-21
Seed ortholog score106.3
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927646.9337237-CDS-E-siliculosus-1a_F_contig11366:328..4871622927646.9337237-CDS-E-siliculosus-1a_F_contig11366:328..487Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11366 329..487 -
1696318623.4565747-CDS-E-siliculosus-1a_F_contig11366:328..4871696318623.4565747-CDS-E-siliculosus-1a_F_contig11366:328..487Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11366 329..487 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927646.9498634-UTR-E-siliculosus-1a_F_contig11366:487..4961622927646.9498634-UTR-E-siliculosus-1a_F_contig11366:487..496Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11366 488..496 -
1696318623.4685872-UTR-E-siliculosus-1a_F_contig11366:487..4961696318623.4685872-UTR-E-siliculosus-1a_F_contig11366:487..496Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11366 488..496 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11366.902.1prot_E-siliculosus-1a_F_contig11366.902.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11366 329..487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11366.902.1

>prot_E-siliculosus-1a_F_contig11366.902.1 ID=prot_E-siliculosus-1a_F_contig11366.902.1|Name=mRNA_E-siliculosus-1a_F_contig11366.902.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=53bp
MLVQAAKTPSAYLSSFHAFVLANALRRPILVYGDRFVRGRNGEPYAPSDV
RG*
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mRNA from alignment at E-siliculosus-1a_F_contig11366:329..496-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11366.902.1 ID=mRNA_E-siliculosus-1a_F_contig11366.902.1|Name=mRNA_E-siliculosus-1a_F_contig11366.902.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=168bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11366:329..496- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAGTGGCACATGCTGGTGCAGGCCGCCAAGACGCCGTCCGCCTACCTCTC
CTCCTTCCACGCCTTCGTCCTCGCCAACGCGCTGCGGCGGCCCATCCTGG
TATACGGGGACCGCTTCGTGCGCGGCAGGAACGGCGAGCCGTACGCCCCC
TCCGACGTACGCGGGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11366:329..496-

>mRNA_E-siliculosus-1a_F_contig11366.902.1 ID=mRNA_E-siliculosus-1a_F_contig11366.902.1|Name=mRNA_E-siliculosus-1a_F_contig11366.902.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=318bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11366:329..496- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTGGTGCAGGCCGCCAAGACGCCGTCCGCCTACCTCTCCTCCTTCCA
CGCCTTCGTCCTCGCCAACGCGCTGCGGCGGCCCATCCTGGTATACGGGG
ACCGCTTCGTGCGCGGCAGGAACGGCGAGCCGTACGCCCCCTCCGACGTA
CGCGGGTGAATGCTGGTGCAGGCCGCCAAGACGCCGTCCGCCTACCTCTC
CTCCTTCCACGCCTTCGTCCTCGCCAACGCGCTGCGGCGGCCCATCCTGG
TATACGGGGACCGCTTCGTGCGCGGCAGGAACGGCGAGCCGTACGCCCCC
TCCGACGTACGCGGGTGA
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