mRNA_E-siliculosus-1a_F_contig1135.893.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1135.893.1
Unique NamemRNA_E-siliculosus-1a_F_contig1135.893.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1135.893.1 vs. uniprot
Match: D7FSN1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSN1_ECTSI)

HSP 1 Score: 540 bits (1390), Expect = 2.500e-190
Identity = 263/277 (94.95%), Postives = 269/277 (97.11%), Query Frame = 1 
Query:    1 MGSSTPMHAMLCIVVLFVGAPAAVEGLAAKGVYYFDDECGQGQETGTYYLAFGSYNPDPESNTSSREPFNECYVDTSTTVLDGRSLVYTCNLSTGETKLTVYEDQECSDFYLSTGGTGSCSVADISDDDDGDVCLEEEACSSNETCTDDDPFAISPNAFNVVAAQYSDDKCTVPTGVDDVVSGYDVSAPGFSSEGCFPPELDPEVPTPSLPFLSECLSDGSAVIQLFGLSDLTCSGEVQLEYHTNFTPHMSSGPDMRRMADAADSCYLIGDYYYRPV 831
            MGSSTPMHAML IVVLFVGAPAAVEGLAAKGVYYFDDECGQGQETGTYYLAFGSYNPDPESNTSSREPFNECYVDTSTT+LDGRSLVYTCNLSTGETKLTVYEDQEC D YLSTGGTGSCSVADI DDDDGDVCLEEEACSSNETCTDD+PFA+SPNAFNVVAAQYSDDKCTVPTGVD VVSGYDVSAPGFS+EGCFPPE DPEVP PSLPFLSECLSDGSAVIQLFGLSDLTCSGEVQLEYHTNFTPHMSSGPDMRRMADAADSCYL+GDY+YR V
Sbjct:   16 MGSSTPMHAMLRIVVLFVGAPAAVEGLAAKGVYYFDDECGQGQETGTYYLAFGSYNPDPESNTSSREPFNECYVDTSTTILDGRSLVYTCNLSTGETKLTVYEDQECLDVYLSTGGTGSCSVADIFDDDDGDVCLEEEACSSNETCTDDEPFALSPNAFNVVAAQYSDDKCTVPTGVDHVVSGYDVSAPGFSTEGCFPPESDPEVPAPSLPFLSECLSDGSAVIQLFGLSDLTCSGEVQLEYHTNFTPHMSSGPDMRRMADAADSCYLVGDYHYRAV 292
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1135.893.1 vs. uniprot
Match: A0A6H5K9P6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9P6_9PHAE)

HSP 1 Score: 287 bits (734), Expect = 2.250e-90
Identity = 148/201 (73.63%), Postives = 155/201 (77.11%), Query Frame = 1 
Query:  223 DTSTTVLDGRSLVYTCNLSTGETKLTVYEDQECSDFYLSTGGTGSCSVADISDDDDGDVCLEEEACSSNETCTDDDPFAISPNAFNVVAAQYSDDKCTVPTGVDDVVSGYDVSAPGFSSEGCFPPELDPEVPTPSLPFLSECLSDGSAVIQLFGLSDLTCSGEVQLEYHTNFTPHMSSGPDMRRMADAADSCYLIGDYYYR 825
            DTSTT+LDGRSL YTCNLSTGETK+TVYEDQE SDFYLSTGGTGSCSVADI DDDDGDVCLEEEACSSNETCTDD+P AISPNAFNVVAA+YSDDKCTVPTGVD VVSG DVSA GFS+EGCF                                       EVQLEYHTNFTPHMSSGPDMRRMADAADSCYL+GDYY+R
Sbjct:  169 DTSTTILDGRSLAYTCNLSTGETKVTVYEDQEWSDFYLSTGGTGSCSVADIFDDDDGDVCLEEEACSSNETCTDDEPIAISPNAFNVVAARYSDDKCTVPTGVDHVVSGCDVSASGFSTEGCF--------------------------------HQNRIQREVQLEYHTNFTPHMSSGPDMRRMADAADSCYLVGDYYHR 337
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1135.893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSN1_ECTSI2.500e-19094.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9P6_9PHAE2.250e-9073.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1135contigE-siliculosus-1a_F_contig1135:28731..36749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1374
Model size1374
Exons4
Ec32 orthologEc-07_002490.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categorysignal peptide
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1135.893.1prot_E-siliculosus-1a_F_contig1135.893.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1135 28731..36749 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927646.0641904-CDS-E-siliculosus-1a_F_contig1135:28730..292801622927646.0641904-CDS-E-siliculosus-1a_F_contig1135:28730..29280Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1135 28731..29280 -
1696318622.9314194-CDS-E-siliculosus-1a_F_contig1135:28730..292801696318622.9314194-CDS-E-siliculosus-1a_F_contig1135:28730..29280Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1135 28731..29280 -
1622927646.07978-CDS-E-siliculosus-1a_F_contig1135:30777..311531622927646.07978-CDS-E-siliculosus-1a_F_contig1135:30777..31153Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1135 30778..31153 -
1696318622.9449039-CDS-E-siliculosus-1a_F_contig1135:30777..311531696318622.9449039-CDS-E-siliculosus-1a_F_contig1135:30777..31153Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1135 30778..31153 -
1622927646.0940812-CDS-E-siliculosus-1a_F_contig1135:31509..317581622927646.0940812-CDS-E-siliculosus-1a_F_contig1135:31509..31758Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1135 31510..31758 -
1696318622.9545233-CDS-E-siliculosus-1a_F_contig1135:31509..317581696318622.9545233-CDS-E-siliculosus-1a_F_contig1135:31509..31758Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1135 31510..31758 -
1622927646.1108863-CDS-E-siliculosus-1a_F_contig1135:36550..367491622927646.1108863-CDS-E-siliculosus-1a_F_contig1135:36550..36749Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1135 36551..36749 -
1696318622.9689438-CDS-E-siliculosus-1a_F_contig1135:36550..367491696318622.9689438-CDS-E-siliculosus-1a_F_contig1135:36550..36749Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1135 36551..36749 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1135.893.1

>prot_E-siliculosus-1a_F_contig1135.893.1 ID=prot_E-siliculosus-1a_F_contig1135.893.1|Name=mRNA_E-siliculosus-1a_F_contig1135.893.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=458bp
MGSSTPMHAMLCIVVLFVGAPAAVEGLAAKGVYYFDDECGQGQETGTYYL
AFGSYNPDPESNTSSREPFNECYVDTSTTVLDGRSLVYTCNLSTGETKLT
VYEDQECSDFYLSTGGTGSCSVADISDDDDGDVCLEEEACSSNETCTDDD
PFAISPNAFNVVAAQYSDDKCTVPTGVDDVVSGYDVSAPGFSSEGCFPPE
LDPEVPTPSLPFLSECLSDGSAVIQLFGLSDLTCSGEVQLEYHTNFTPHM
SSGPDMRRMADAADSCYLIGDYYYRPVSCTLDAVTVEGSTATPSPVEPTP
SPTDDGAARDIPGGVDSSPAPTADAPTASGEVVPSSPSPVASPTPPPSSG
TSPSPVASPTPPPSSVTSPSPTPGETSPPAASLTPSPSSQTTPSPSPTSG
EASMVPATAATEAPTTVAVESATSGATAVRIAGIRTIAVTLSCWSAVLVT
LMYCTAD*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1135:28731..36749-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1135.893.1 ID=mRNA_E-siliculosus-1a_F_contig1135.893.1|Name=mRNA_E-siliculosus-1a_F_contig1135.893.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=8019bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1135:28731..36749- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGGTCCTCAACGCCCATGCATGCGATGCTATGCATCGTCGTCTTGTT
TGTCGGGGCTCCAGCGGCTGTGGAAGGGCTAGCCGCCAAAGGCGTCTATT
ATTTTGACGACGAATGCGGTCAAGGCCAAGAGACGGGAACCTACTATCTT
GCGTTCGGCTCCTACAACCCTGACCCGGAATCGAACACAAGTTCCCGAGG
TGAGCGAAAAAATTGTGCCGGGTCCGCCCGGGATATTCAATACTTCGACC
TTCACACAACTTACCTCACTCAGTATCTCACCACGATGGGGGGACTGCTG
TCGCCATAACAAATAGGACGAAAAAAATCACAGTATCCAGTACTAATAGA
GGTTAAGAATTGGCCCCCCGCCCCCCAATGGGGCGAACGTCAAGACCGAG
ATGGATGACGGTGAGGGTTTGGGAGGAAGTGAAGAATATGAAGATGGAAG
ACGACACGTTAGGAGTGGCAAGAAGGGACGGTGTATGGACACGCATCAAG
ACGCGAAGACGTTGACGAAGAGCGAGAGGGCACAGGATGGAATTGGTAGC
GGTCTCCGAGATTGACGGAGCAGCAAAAAAGCAGTGATGAAATCAGATTA
CAGACAGGAATGGTCGTCGTCGACCGTCGTTTCACAAAAAAATATAGTAC
CCTCAATTTTTTTTATCTAGAAACAGCTAGAAACAGCTAGAAACAATGAC
GTGTTTGCGCAAGAACCAAAACTTGTTATTCTGATGCCAGTCAATTAAAA
TATATATGAAGTATTCCACCTTGCGCAGGTAGAAATGCACATCGCGGACA
GCAGTGACGCGACCTCCTCGGCAAGAGTCATCGAATAAATGTTCCGAAAT
GTCCATATCGCCTGCACACCCGCACACACACACAGAGCATCAACCAGCAC
ACACAGCGTATAGACATAGCGGCACACATAGATGCGGCAGGCGGACATCT
GACCCACCGCACGCAATGTGATGTGATCTTAAGCCTGCCGACCTTCCCAC
AGCGTTAGTTAGTAGTCTCTATTTTATTGCAACGACGCAACAAGCCGTTT
GCCATTTGTGGTAAGCGAGGCGCAACATATTTCATGCGAACAGCGCGGGC
GCAGTTAGCAAAAACAAACTGAACCAATCGCCGGGCAATCGCGTCCTGTG
TGAACGCACAGATGTATGTAGTAGATCCTCACGCCCGCGAAAGTGTCTCT
CGATCTGCTTGTCCGACGGTGTGAGCGATACGACCGTCAGCTCCCACCTG
TTGGCGGTCTGTATGTATGTGCATGGGTGGATATGATATGATGTGTGTGT
TCAGCAAGCTGCATGATCGCCGCCGTGTCGATCTTTCAGCGATCCCACGC
GAGCCGTTGGTATTCTTGGGCCCACGCAATAAGAACAACCCACCAGGAGC
ACATCGCGCATGACTAGACACCCACAGTGCAGGTCGTGTTTGTTGGCCTC
GGATGTGTGCGGGATAAAGATGCTCGGGGTGTCTGTTCGAGGTGGTTGTT
GTCTGTTCGCCGCCGCAAGCTGCCGTTGCAAATTTTGCTTTCAAATTTCT
GTATCTGGGCAAATCTAGTATAACATTTTGGCAAAATTTGCTTCGGAGGA
ACTTAAAATACCCCGAAGTGGTCGTTATGAGCCAAATATTGCTCTGCGCA
AACACGTCAATATAGGGTCCCTAAAAAAACATTTCCAGCGCAACATATGC
ATAAACGTCCAGCCAAGCGCTTCTTAAAGGATAAAGGCCGACACACGTCG
CAAATGATTGACAGCAACGACCATAGAGGCATACCGTACACGTCAGCCTA
GCGCAAGCCAATTGAGGGGTAGTGCAGGTAGCTGCAGGTTGGTGCAGCTA
TGGCTGGTGGGGGAAATTCATATTATCAGCTGCCGCCCCAACCTCTGTCC
CACTGGTGGGGTACATAGCCTTTGAATACCCCGCCAGCTGCGTGTCGCCC
TAAAAGGCTCCAATCGACACACAAGCACCGGTAGGAGTGTTTGGTACATT
CATGCGCAGCTCACAGCAGCGGACAGCAGGTCAGGTGGCGAGCGGGTCAA
GTATTCCCGCCACACAGCTCCAAACACGTCAGGTGGGAATCGAACACTGC
GTTCTCTCTTCCCGCAGGTAAACTTCCTTCAGCAACACGAGAATCCCACT
GCTGTGTCTCGCCCTACAATTCTCCAATCGACACACCAACACCGGTAGAA
GTAATTGGTACATGCACACCCAGCGCAAAGCAGCGGACAGCTGGTCGGGT
GGCGAGCACGTCAAGTGTTCCCACCACACAGCTCCAAACACGTCAGTCAG
GTGGGAATCGAACACAGCCTTCTCTGTTCCTGCAGGCAGACTTCCTTAAA
ACAACATGAGAATCCCACTGTATCTAGCCTTACAAGACTCCAATCGACAC
ACCAGCACCGGTAGGAGTGTTTGGTACATGCGCACACAACCCACAGCAGC
GGGCAGCAGGTCGGGTGGCGAGCACGTCAAGTATTCCCGCCACACAGCTC
CAAACCTGAACACGTCAAGTGGAATAGTCTACACGTCGAACACTGTTCTT
TCTTGTTGCAAGCAGACTTCCTTCAGCACCGCGAGAATCCCACTGCTGCA
TCTCGAGCATTCAGGTATGGTTCGTCGTCGCAGAAGGGATCCCATCCCGT
CCTGATCGTCGCCGTAGGCGAACAATGTTCGGTGTCTGGTCCGTACTGCT
GTACTTTAGCCAAAAACACAATCCGAGCCGTGTAGTTATTTCTCCCATAC
TAATAGCAAGAAATGTGTCACGTCACGACGACCATCCTGTGAGTATATAG
ATAACATGATCCAACAGTGTCCAGTGTCCAGGGTTTCTGGCTGTTGTCGA
CCACCCCTACTTCCTTCATGAGTAGACTAAATGCTGTACTATTGCATTGT
AGAGTCGCAAGCAACAAGTGTCGGGTGCCTCTGGCCGTCCACGTTTGGCA
CATTGATCTTTGTCAGAGACCAGTCGGCCACGGAAGTCACCGGATTGGGA
ATTCTATAAGGCATTATCCTTTTTTCACTTAAAGATCAACTCGAAAAGTA
AGCAGAAATTTCTCTCGGGCTCTCACGGCGCTGCATTTGGCCTCTCTGGA
CAGCTCACAGGCCTTCACTTCTCCAAATCTTCGTTTTCCCGTTTTCCCGC
TTTTTCCCGTTCATTCGCCGCTTTTTTTCCGCTTTTTTTCTTCTCTGTCA
CGTTTCCACCCTTCCTTTCGCACGCCTCTCACATGGGGACTTCATCTTCC
TCTCTCGGTTGTCGCACACACATCCATTCTTCACACATCCAGTCTGCTTT
TGCCCGTTGCTCTCCACTTCTGTATATCGTTCAACATCCACAACATTCAA
CTTCCCTTTTCGTTGTTTTTCAGTTCCGATATTCGACTACCTGTCAGTCT
CGTTCTGCACGGACGGTTAAATCGGGAATTGCCCGTCCCTTTCATCTGTT
GCTGCTCTCATCCATCCACACATCACGTTTTATACCAGTCTCTCTGTCTC
CCCTCACACACCATCATCAGTCTGTCTCTCCCCTCTCGCATGGCCCAGCA
CCATCTGTCCTGGGTCTTTGGGCGCCTCATGTTCCTTTCATTCCACTTCT
TCTCTTCGGAACGCTTCTCTTCCGAGTTTCCCGGGCGAGGGGTTTATTAG
GAAATACACATGAACAGCAATTCTGAGCGGGGCGGCGAAATGCGCCAGAG
TACGCCCTCTCTCTCTTTCTGCAACAAACCGTTTTTTTTTTTTTACTAAG
TTGCTTGCGCTTATCGCATATCTTGGAATCGATCTACTGAGCGGGGCGTC
GAAAGCCATCAGACCACCTTGTACAGATTACAGACTGCTGTAGTCTGGAC
ACCACAGCATGCACCTACGCCCCCTACTTTATACGTAGTGCTCAAGGCTG
GCGCCATGTTGGCTGCCCGTGACCGAGCGCCTGTTTTGATTGCATTTTTC
TTATACTTTGTCCCGGCAGAAAACTGATGTGTTTGGTAAGATACGGGCGC
TCGGTAGGGTATGAATGAAAAACTTATGTCGAGATTTCGGGAATCTATGG
AATCCTATACCCAAATTCTCGTACTGAGAATTTCGGCAGTGTATGAAGCC
TGTACAGGTAGGGTATATACCGCCGGTATATGCCGGAGGCATGCCTCTGT
ACGTACCCTTGAACACACCTTTGTGTGTAGGGTAGCTCGGTAGGGTATGG
AAAACTTTTCGAAACGTACCGAGATGGTAAGGTATGGAGATCTATACCGC
TCGTACCGGGATTATCGGTAAGATATGTAAGGAATCCCGTACAGATCATA
CCGAGACGCTCGGTAGGGTACGCAACAGCGGTGTATACCGTAGGTATGCC
TCACTACGTATCTTACCGAACACATCCTTGCAAGGTTTTCGGAAGCGACG
TATTTCACGAAATTGCAGGCACTCCGTCAATTTCGGGCGGCCGCATCATT
TTGGTATAATTTTCTGATAGTGTACCGCCATCATGGCCACGCACTGGAGC
GGTTTATGCTACAGGGGGAGTTAAACGCTCCGCTCCGTGGGAAGTTCTCC
CCCTGGTAAACCGCTCCGCTCAAACCATATTTTCCAACGTCAACAAACGC
ACCTCTCTCCGCCCCGTAATGTCTTCGAATGAAGAAGAAACTTTCCGCCG
AGCGGTTCTAGTCCGTGCACACCCTGATAAGTATCTCCCGGGAGTCCGCT
GATTGGCTGGTAGTGCTCCATTCCCATGAACGATACACGGCTGTATTCTT
ACTGCACGTGAAACGCGAATCCTGGTTTGTGGAGCTCCTACAATATTCAG
GCCTGCCAGCAACGGTCATAACATCCTGCGTCACGCAGAGCAGGAATGCG
ATGTGTAAGATTGATACTGACCTGGCCTACCGCAACGTCCTCGGCCACTC
CTATGCGAAACCATCTTCGTCGATGAGTGGACTGACCATGCCTCTTTGCG
CCTGTTGTCCTCGTCTCACTCTCTCGATCCTCCATTGTCAGAGCCTTTCA
ATGAATGCTATGTAGACACGAGCACGACCGTACTGGACGGCCGGTCCTTA
GTTTACACATGCAACCTCTCCACAGGAGAAACCAAGCTCACGGTGTACGA
GGACCAGGAATGCTCAGATTTTTACCTGTCAACTGGTGGCACTGGTTCTT
GTTCCGTTGCCGACATTTCCGACGATGACGATGGTGACGTGTGTCTCGAG
GAGGAGGCCTGCTCTTCCAACGAAACCTGCACAGACGACGGTGAGAGGCA
TGTATACGGGGTACTCGTGCTCCTGTTCCGCGCAGCGGACGTGCCTTGAG
TGCCGCTTTAGCTCTTTGAGTGCATATTTTTGTGTTCCTTGCACCTCGAA
GCACAGCTTGTTGCAGCTGGTCACCCGACGAGTCTCTGCATCTTCCTTGC
CGCAACTGTTCTTACGGTGAAAAAACTTATGCACACACCTGTTTTCGAGA
AGCCTAGCGATGTGAAAATCACTTCGTCCCATGTAGTGTCTGGACGCCTT
AATCTCGTGACAATCCCCTGGCGACCTTCGGTAAGGCTCCGCTCACGCGA
CCCCGACGTGTTGCAACCGATGCTTCGTTCTCTCGTCGTCTCGCAGACCC
TTTTGCAATCTCGCCCAATGCCTTCAATGTGGTGGCTGCGCAGTACTCGG
ACGACAAGTGCACAGTTCCTACTGGTGTGGATGACGTGGTATCGGGGTAC
GATGTCAGTGCCCCTGGGTTTTCGAGCGAGGGATGTTTTCCACCAGAATT
GGATCCAGAGGTACCGACCCCCAGCCTTCCATTCCTCAGCGAATGTCTCT
CGGATGGAAGCGCTGTCATCCAGTTGTTTGGGTTGTCCGACCTCACTTGC
AGCGGGGAAGTGCAACTTGAATACCATACCAACTTCACTCCCCACATGTC
ATCGGGGCCAGACATGCGCCGAATGGCGGACGCTGCAGACTCGTGCTACC
TGATTGGCGACTACTATTACAGGTAAGATGTCACGTCGAGGGAATCTCGA
TGCCTTCTTCCCTTCAACCAGCCTTTGGAATTGCTTGTTTTTGTATTTCT
GGGTCGATGAAAACATTGGGGTTGACGTAAGTGTTCTGCGTTGTGAGGGC
GGTGGAGAGCAGAGAGGCTTGAGCAACCGCCGTCAACACATTCGCTGCGT
TTTTGGGAAGGTTCTGTGCGACAGCTGCGCTCACTCGTCCAGTTAGTGCG
CCGCCTTCCGGGCTTGCGCCTCCTCGCACTACAGTATGCCTCGTCCAGCA
TGAATGGGCATTTGTTCCCCGCGAAAGATTTTTGTAAGAGGTACCCGTCA
CTAATAACGGGGTTAGGGATATGGTGGATGAGAGTGTTGCATCTTATCGT
ACTCGCATATGTTCTTGCCTGAACAACCCACTTTGTCGAGGCGGTGGGAA
CATTCTCCGGTGCCGTCCTCCGTGTTTGCCGAATGGTAGCCGAAGATGAT
GTCAACAACGAAAACACTTCTCGACATCATCTGATGTCTAAACCGCAACC
GTTAATATGCAAAATTTCACGGACGACGAATTTCGGCTTAGTTCGCCGTG
TCACTCCGATATATGTAGCGCCCTTCCCTACTCTTCAAGGCAATGGGAAG
ATTTTCCGTGGTCACAAGCCAACCGATACTACGGTACTGGTATCTAACGA
GAAAAGACTCCGCGAAAAACCGCAACGCACGAAAGAAGAAACTGCTAGAC
AGAATGAGAAGAAAGACCTACAGAACCAACTGATCTTACCTTGGACGCTT
TTCACGCCCCCGAAGACATGCCGCTGAAGGAGCACCTCTTATGGCGAAAT
TCGGCTGAGGACGATGTCCTCATGGCAGTTGGGATCCGGGGATTGTCATC
GTACGTTATTTTTTTTCGCCGACCAGGCCAACCCCCTCTCCACATAACAG
TCGTGAAGGGGTTATGTCAAGCTGAAATCGAAGGCTAGACGAAACTACCC
CTGCGGCCGAGCTATGCCAGTATTCTCTCTGTCGGGGGGGTTACCGATCA
GCCAATCACTGCTCGTACTGCCATGTTACAGGGGGCGCGGGGGTTTTGGA
AATGCGGACGGTCACAGGTCCACACGATGTAGGCAGAACAACGAGCGCCG
GGTAATATCAACACTGAACATGGACAGGTCAACTCTACGCCATGGATGAG
GTCAAGGTCGTTTCTTTGGGACAAGTTGGCTGAAGTGGACAAAATCGTCG
CTGTACCAGCATGCCTCTTTCGTTTTGGACTTGAATTGTCGGATTGCGGC
CAACCGTCCCCTTGATTGATGATTGCGTGGTACTCTGACCATGCTGCCTG
CCGTCATGAGCTCCTGATCATCGTTCGACGAAACATACATGCCCTTCCCG
AGACCCACACCTACGCGCGAATACGCAATAACGCGATCGACTTTCTGCTT
CGGTGGGGACAATATGACTGGTTTTACATGTATTTTGTTGTGCTCGCCTT
GTTTCTGTCCATGCCCTAGGCCTGTCTCCTGCACGCTGGACGCGGTGACC
GTCGAAGGGTCCACGGCGACTCCATCCCCGGTCGAGCCAACTCCCTCCCC
GACAGACGACGGTGCCGCTCGAGACATCCCTGGCGGCGTTGATTCAAGTC
CGGCCCCGACAGCTGACGCTCCCACAGCCTCCGGCGAGGTGGTACCAAGC
TCCCCCAGCCCGGTGGCTTCCCCGACCCCTCCGCCGTCTTCCGGCACATC
ACCGTCGCCGGTGGCTTCCCCGACCCCTCCGCCGTCTTCCGTCACATCGC
CGTCGCCGACACCGGGTGAGACGTCGCCGCCCGCGGCTTCCCTGACCCCC
TCGCCGTCTTCGCAGACTACGCCGTCGCCGTCACCCACGTCGGGTGAAGC
GTCGATGGTGCCAGCCACGGCGGCGACTGAAGCGCCTACCACCGTGGCGG
TAGAATCGGCAACCAGCGGGGCGACGGCCGTCAGGATAGCTGGAATCCGT
ACAATAGCGGTGACATTGAGCTGCTGGTCGGCTGTGTTAGTAACCCTGAT
GTACTGTACAGCTGATTAG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1135:28731..36749-

>mRNA_E-siliculosus-1a_F_contig1135.893.1 ID=mRNA_E-siliculosus-1a_F_contig1135.893.1|Name=mRNA_E-siliculosus-1a_F_contig1135.893.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2748bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1135:28731..36749- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGGTCCTCAACGCCCATGCATGCGATGCTATGCATCGTCGTCTTGTT
TGTCGGGGCTCCAGCGGCTGTGGAAGGGCTAGCCGCCAAAGGCGTCTATT
ATTTTGACGACGAATGCGGTCAAGGCCAAGAGACGGGAACCTACTATCTT
GCGTTCGGCTCCTACAACCCTGACCCGGAATCGAACACAAGTTCCCGAGA
TGGGGTCCTCAACGCCCATGCATGCGATGCTATGCATCGTCGTCTTGTTT
GTCGGGGCTCCAGCGGCTGTGGAAGGGCTAGCCGCCAAAGGCGTCTATTA
TTTTGACGACGAATGCGGTCAAGGCCAAGAGACGGGAACCTACTATCTTG
CGTTCGGCTCCTACAACCCTGACCCGGAATCGAACACAAGTTCCCGAGAG
CCTTTCAATGAATGCTATGTAGACACGAGCACGACCGTACTGGACGGCCG
GTCCTTAGTTTACACATGCAACCTCTCCACAGGAGAAACCAAGCTCACGG
TGTACGAGGACCAGGAATGCTCAGATTTTTACCTGTCAACTGGTGGCACT
GGTTCTTGTTCCGTTGCCGACATTTCCGACGATGACGATGGTGACGTGTG
TCTCGAGGAGGAGGCCTGCTCTTCCAACGAAACCTGCACAGACGACGAGC
CTTTCAATGAATGCTATGTAGACACGAGCACGACCGTACTGGACGGCCGG
TCCTTAGTTTACACATGCAACCTCTCCACAGGAGAAACCAAGCTCACGGT
GTACGAGGACCAGGAATGCTCAGATTTTTACCTGTCAACTGGTGGCACTG
GTTCTTGTTCCGTTGCCGACATTTCCGACGATGACGATGGTGACGTGTGT
CTCGAGGAGGAGGCCTGCTCTTCCAACGAAACCTGCACAGACGACGACCC
TTTTGCAATCTCGCCCAATGCCTTCAATGTGGTGGCTGCGCAGTACTCGG
ACGACAAGTGCACAGTTCCTACTGGTGTGGATGACGTGGTATCGGGGTAC
GATGTCAGTGCCCCTGGGTTTTCGAGCGAGGGATGTTTTCCACCAGAATT
GGATCCAGAGGTACCGACCCCCAGCCTTCCATTCCTCAGCGAATGTCTCT
CGGATGGAAGCGCTGTCATCCAGTTGTTTGGGTTGTCCGACCTCACTTGC
AGCGGGGAAGTGCAACTTGAATACCATACCAACTTCACTCCCCACATGTC
ATCGGGGCCAGACATGCGCCGAATGGCGGACGCTGCAGACTCGTGCTACC
TGATTGGCGACTACTATTACAGACCCTTTTGCAATCTCGCCCAATGCCTT
CAATGTGGTGGCTGCGCAGTACTCGGACGACAAGTGCACAGTTCCTACTG
GTGTGGATGACGTGGTATCGGGGTACGATGTCAGTGCCCCTGGGTTTTCG
AGCGAGGGATGTTTTCCACCAGAATTGGATCCAGAGGTACCGACCCCCAG
CCTTCCATTCCTCAGCGAATGTCTCTCGGATGGAAGCGCTGTCATCCAGT
TGTTTGGGTTGTCCGACCTCACTTGCAGCGGGGAAGTGCAACTTGAATAC
CATACCAACTTCACTCCCCACATGTCATCGGGGCCAGACATGCGCCGAAT
GGCGGACGCTGCAGACTCGTGCTACCTGATTGGCGACTACTATTACAGGC
CTGTCTCCTGCACGCTGGACGCGGTGACCGTCGAAGGGTCCACGGCGACT
CCATCCCCGGTCGAGCCAACTCCCTCCCCGACAGACGACGGTGCCGCTCG
AGACATCCCTGGCGGCGTTGATTCAAGTCCGGCCCCGACAGCTGACGCTC
CCACAGCCTCCGGCGAGGTGGTACCAAGCTCCCCCAGCCCGGTGGCTTCC
CCGACCCCTCCGCCGTCTTCCGGCACATCACCGTCGCCGGTGGCTTCCCC
GACCCCTCCGCCGTCTTCCGTCACATCGCCGTCGCCGACACCGGGTGAGA
CGTCGCCGCCCGCGGCTTCCCTGACCCCCTCGCCGTCTTCGCAGACTACG
CCGTCGCCGTCACCCACGTCGGGTGAAGCGTCGATGGTGCCAGCCACGGC
GGCGACTGAAGCGCCTACCACCGTGGCGGTAGAATCGGCAACCAGCGGGG
CGACGGCCGTCAGGATAGCTGGAATCCGTACAATAGCGGTGACATTGAGC
TGCTGGTCGGCTGTGTTAGTAACCCTGATGTACTGTACAGCTGATTAGGC
CTGTCTCCTGCACGCTGGACGCGGTGACCGTCGAAGGGTCCACGGCGACT
CCATCCCCGGTCGAGCCAACTCCCTCCCCGACAGACGACGGTGCCGCTCG
AGACATCCCTGGCGGCGTTGATTCAAGTCCGGCCCCGACAGCTGACGCTC
CCACAGCCTCCGGCGAGGTGGTACCAAGCTCCCCCAGCCCGGTGGCTTCC
CCGACCCCTCCGCCGTCTTCCGGCACATCACCGTCGCCGGTGGCTTCCCC
GACCCCTCCGCCGTCTTCCGTCACATCGCCGTCGCCGACACCGGGTGAGA
CGTCGCCGCCCGCGGCTTCCCTGACCCCCTCGCCGTCTTCGCAGACTACG
CCGTCGCCGTCACCCACGTCGGGTGAAGCGTCGATGGTGCCAGCCACGGC
GGCGACTGAAGCGCCTACCACCGTGGCGGTAGAATCGGCAACCAGCGGGG
CGACGGCCGTCAGGATAGCTGGAATCCGTACAATAGCGGTGACATTGAGC
TGCTGGTCGGCTGTGTTAGTAACCCTGATGTACTGTACAGCTGATTAG
back to top