mRNA_E-siliculosus-1a_F_contig1135.892.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1135.892.1
Unique NamemRNA_E-siliculosus-1a_F_contig1135.892.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1135.892.1 vs. uniprot
Match: D7FSN0_ECTSI (Mitochondrial import inner membrane translocase subunit TIM16 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSN0_ECTSI)

HSP 1 Score: 263 bits (672), Expect = 7.970e-83
Identity = 154/155 (99.35%), Postives = 154/155 (99.35%), Query Frame = 1 
Query:  319 MANPFARIIAQLAVASAGIVSRAFVSAYSQAVHNARTGTLESAKAMSRTSKLSTLEAMQILNLQKGEMKPDLIKQRYDQYFGINDPDKGGSFYLQSKVFRAKEALDEQLALQAKQASEEAALKAKAAAGGKXXXXXAKARPAEGGARRPSANRRR 783
            MANPFARIIAQLAVASAGIVSRAFVSAYSQAVHNARTGTLESAKAMSRTSKLSTLEAMQILNLQKGEMKPDLIKQRYDQYFGINDPDKGGSFYLQSKVFRAKEALDEQLALQAKQASEEAALKAKAAAGGKXXXXXAKARPA GGARRPSANRRR
Sbjct:    1 MANPFARIIAQLAVASAGIVSRAFVSAYSQAVHNARTGTLESAKAMSRTSKLSTLEAMQILNLQKGEMKPDLIKQRYDQYFGINDPDKGGSFYLQSKVFRAKEALDEQLALQAKQASEEAALKAKAAAGGKXXXXXAKARPAAGGARRPSANRRR 155
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BLAST of mRNA_E-siliculosus-1a_F_contig1135.892.1 vs. uniprot
Match: A0A835YVS4_9STRA (Mitochondrial import inner membrane translocase subunit TIM16 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVS4_9STRA)

HSP 1 Score: 141 bits (355), Expect = 4.860e-36
Identity = 76/114 (66.67%), Postives = 91/114 (79.82%), Query Frame = 1 
Query:  319 MANPFARIIAQLAVASAGIVSRAFVSAYSQAVHNARTGTLESAKAMSRTSKLSTLEAMQILNLQKGEMKPDLIKQRYDQYFGINDPDKGGSFYLQSKVFRAKEALDEQLALQAK 660
            M+ P AR+IAQL V  AGIVSRAFV+AYSQAV NARTGT +  K+M+RTSK+ST EA+Q+LNL K EM P  I Q++ +YF  NDP+KGGSFYLQSKVFRA+E+L E L L AK
Sbjct:    1 MSGPLARVIAQLMVTGAGIVSRAFVAAYSQAVQNARTGTQQQVKSMTRTSKMSTAEALQVLNLSKAEMDPTRISQQFARYFESNDPNKGGSFYLQSKVFRARESLHETLELAAK 114
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BLAST of mRNA_E-siliculosus-1a_F_contig1135.892.1 vs. uniprot
Match: A0A7S3V4X6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V4X6_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.310e-22
Identity = 55/108 (50.93%), Postives = 78/108 (72.22%), Query Frame = 1 
Query:  328 PFARIIAQLAVASAGIVSRAFVSAYSQAVHNARTGTLESAKAMSR----TSKLSTLEAMQILNLQKGEMKPDLIKQRYDQYFGINDPDKGGSFYLQSKVFRAKEALDE 639
            P AR++AQ AV   GI++RA  +AY  A++NAR G +++AKA S       K+S  EAMQ+LNL KG++ P  +++++D+YF  N  +KGGSFYLQSK++RAKE LDE
Sbjct:    5 PIARVLAQAAVMGIGIMARAIPAAYGAALNNARKGGVDAAKANSEGIFGKKKISVDEAMQVLNLVKGDVSPKAVQKQFDRYFATNAVEKGGSFYLQSKIYRAKEQLDE 112
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BLAST of mRNA_E-siliculosus-1a_F_contig1135.892.1 vs. uniprot
Match: A0A8K1CVL5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CVL5_PYTOL)

HSP 1 Score: 102 bits (253), Expect = 3.300e-22
Identity = 57/109 (52.29%), Postives = 76/109 (69.72%), Query Frame = 1 
Query:  319 MANPFARIIAQLAVASAGIVSRAFVSAYSQAVHNARTGTLES--AKAMSRTSKLSTLEAMQILNLQ-KGEMKPDLIKQRYDQYFGINDPDKGGSFYLQSKVFRAKEALD 636
            M+ P  RIIAQ  V  AGIVSRAFV AY QAVHNA+TG   +  +KA+ R + +   +A++ILN    G    + +++++ +YF  NDP KGGSFYLQSK+FRAKEAL+
Sbjct:    1 MSGPLGRIIAQFVVMGAGIVSRAFVQAYQQAVHNAKTGNTAAMTSKAVKRKNVMERSQALEILNFPTSGTPSQEEVQKQFQRYFEANDPAKGGSFYLQSKIFRAKEALE 109
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BLAST of mRNA_E-siliculosus-1a_F_contig1135.892.1 vs. uniprot
Match: M4C0R0_HYAAE (Uncharacterized protein n=2 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C0R0_HYAAE)

HSP 1 Score: 100 bits (249), Expect = 1.740e-21
Identity = 57/110 (51.82%), Postives = 77/110 (70.00%), Query Frame = 1 
Query:  319 MANPFARIIAQLAVASAGIVSRAFVSAYSQAVHNARTGTLES--AKAMSRTSKLSTLEAMQILNLQKGEMKPDL--IKQRYDQYFGINDPDKGGSFYLQSKVFRAKEALD 636
            M+ P  RIIAQ+ V  AGIVS+AFV AY QAVHNAR+G   +  AK ++   K+S  +A++ILN     + P    I++++ +YF  NDP KGGSFYLQSK++RAKEAL+
Sbjct:    1 MSGPLGRIIAQVVVMGAGIVSKAFVQAYQQAVHNARSGNAGTVAAKTVAGKKKMSKQQALEILNFPTSGVVPSTEDIQKQFTRYFEANDPAKGGSFYLQSKIYRAKEALE 110
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BLAST of mRNA_E-siliculosus-1a_F_contig1135.892.1 vs. uniprot
Match: A0A0P1AYF2_PLAHL (Mitochondrial import inner membrane translocase subunit tim16 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AYF2_PLAHL)

HSP 1 Score: 99.8 bits (247), Expect = 2.140e-21
Identity = 57/112 (50.89%), Postives = 78/112 (69.64%), Query Frame = 1 
Query:  319 MANPFARIIAQLAVASAGIVSRAFVSAYSQAVHNARTGTLES--AKAMSRTSKLSTLEAMQILNLQKGEMKPDL--IKQRYDQYFGINDPDKGGSFYLQSKVFRAKEALDEQ 642
            M+ P  RIIAQ+ V  AGIVS+AFV AY QAV NAR+G   +   KA+ R +++ST +A +ILN       P L  +++++ +YF  NDP KGGSFY+QSK++RAKEAL+ Q
Sbjct:    1 MSGPLGRIIAQVVVMGAGIVSKAFVHAYQQAVQNARSGNAAAMKTKAVVRKNQMSTQQAREILNFPVSGPAPSLEDVQRQFKRYFEANDPAKGGSFYIQSKIYRAKEALERQ 112
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BLAST of mRNA_E-siliculosus-1a_F_contig1135.892.1 vs. uniprot
Match: W7TWQ8_9STRA (Mitochondrial import inner membrane translocase subunit tim16 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWQ8_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 4.610e-21
Identity = 56/108 (51.85%), Postives = 79/108 (73.15%), Query Frame = 1 
Query:  319 MANPFARIIAQLAVASAGIVSRAFVSAYSQAVHNARTGTLESAKAMSRT-SKLSTLEAMQILNLQKGEMKPDL-IKQRYDQYFGINDPDKGGSFYLQSKVFRAKEALD 636
            M+ PF R++  +AV SA + SRAFV+AY QA+ NA+ G   +AKA SRT   ++  EA+++LNLQK ++K    I +++D+YF  N+P KGGSFYLQSKV+RAKE L+
Sbjct:    1 MSGPFVRMLVNIAVMSASVFSRAFVAAYHQALQNAKQGGGTAAKAASRTYGGMAPDEALKVLNLQKTDLKSSARIIEQFDKYFSQNEPGKGGSFYLQSKVYRAKECLE 108
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BLAST of mRNA_E-siliculosus-1a_F_contig1135.892.1 vs. uniprot
Match: D0NVB8_PHYIT (Uncharacterized protein n=16 Tax=Phytophthora TaxID=4783 RepID=D0NVB8_PHYIT)

HSP 1 Score: 98.2 bits (243), Expect = 8.970e-21
Identity = 57/110 (51.82%), Postives = 76/110 (69.09%), Query Frame = 1 
Query:  319 MANPFARIIAQLAVASAGIVSRAFVSAYSQAVHNARTGTLES--AKAMSRTSKLSTLEAMQILNLQKGEMKP--DLIKQRYDQYFGINDPDKGGSFYLQSKVFRAKEALD 636
            M+ P  RIIAQ+ V  AGIVS+AFV AY QAVHNAR+G   +  AK + R +++   +A +ILN       P  + I++++ +YF  NDP KGGSFYLQSK+FRAKEAL+
Sbjct:    1 MSGPLGRIIAQVVVMGAGIVSKAFVQAYQQAVHNARSGNAGAMAAKTVVRKNQMPKQQAREILNFPTSGPAPSSEEIQKQFTRYFEANDPAKGGSFYLQSKIFRAKEALE 110
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1135.892.1 vs. uniprot
Match: A0A2D4C867_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C867_PYTIN)

HSP 1 Score: 97.4 bits (241), Expect = 1.420e-20
Identity = 54/110 (49.09%), Postives = 75/110 (68.18%), Query Frame = 1 
Query:  319 MANPFARIIAQLAVASAGIVSRAFVSAYSQAVHNARTGT---LESAKAMSRTSKLSTLEAMQILNLQKGEMKP-DLIKQRYDQYFGINDPDKGGSFYLQSKVFRAKEALD 636
            M+ P  R+IAQ+ V  AGIVSRAFV AY QAVHNA+TG    + +  A+ R + +   +A++ILN         + +++++ +YF  NDP KGGSFYLQSK+FRAKEAL+
Sbjct:    1 MSGPLGRVIAQVIVMGAGIVSRAFVQAYQQAVHNAKTGNTAAMTAKTAIKRKNVMPRTQALEILNFPTSATPTTEXVQKQFQRYFEANDPAKGGSFYLQSKIFRAKEALE 110
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1135.892.1 vs. uniprot
Match: A0A5D6XKL2_9STRA (EF-hand domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XKL2_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.920e-20
Identity = 61/124 (49.19%), Postives = 85/124 (68.55%), Query Frame = 1 
Query:  319 MANPFARIIAQLAVASAGIVSRAFVSAYSQAVHNARTGTLESAKAMSRTSK----LSTLEAMQILNLQKG-EMKPDLIKQRYDQYFGINDPDKGGSFYLQSKVFRAKEALDEQLALQAKQASEE 675
            M+ P AR+IAQ+ V +AG+VSRAFV+AY QAVHNA++G   +A A    ++    +S  +A++ILN       KPD + +++ +YF  NDP KGGSFYLQSK+FRAKEAL+ + A     AS+E
Sbjct:  361 MSGPIARVIAQVVVMTAGVVSRAFVTAYQQAVHNAKSGNTAAAMAAKPAARAKNVMSREQALEILNFPTAAHPKPDEVAKQFTRYFEANDPAKGGSFYLQSKIFRAKEALEREQAAAGGDASQE 484
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1135.892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSN0_ECTSI7.970e-8399.35Mitochondrial import inner membrane translocase su... [more]
A0A835YVS4_9STRA4.860e-3666.67Mitochondrial import inner membrane translocase su... [more]
A0A7S3V4X6_9STRA2.310e-2250.93Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A8K1CVL5_PYTOL3.300e-2252.29Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
M4C0R0_HYAAE1.740e-2151.82Uncharacterized protein n=2 Tax=Hyaloperonospora a... [more]
A0A0P1AYF2_PLAHL2.140e-2150.89Mitochondrial import inner membrane translocase su... [more]
W7TWQ8_9STRA4.610e-2151.85Mitochondrial import inner membrane translocase su... [more]
D0NVB8_PHYIT8.970e-2151.82Uncharacterized protein n=16 Tax=Phytophthora TaxI... [more]
A0A2D4C867_PYTIN1.420e-2049.09Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A5D6XKL2_9STRA1.920e-2049.19EF-hand domain-containing protein n=1 Tax=Pythium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1135contigE-siliculosus-1a_F_contig1135:1540..6562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size468
Model size1583
Exons5
Ec32 orthologEc-07_002470.1
Ec32 ortholog descriptionMitochondrial import inner membrane translocase subunit TIM16 homolog
Hectar predicted targeting categorychloroplast
BRITEko00000,ko03029,ko04812
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsKOG3442@1,KOG3442@2759
EggNOG free text desc.protein import into mitochondrial matrix
GOsGO:0001405,GO:0001503,GO:0001700,GO:0002164,GO:0002165,GO:0002168,GO:0002237,GO:0002831,GO:0002832,GO:0003674,GO:0003779,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005759,GO:0005794,GO:0005802,GO:0006139,GO:0006259,GO:0006605,GO:0006626,GO:0006725,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006892,GO:0006895,GO:0006996,GO:0007005,GO:0007010,GO:0007015,GO:0007275,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008154,GO:0008320,GO:0008565,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009617,GO:0009790,GO:0009791,GO:0009792,GO:0009892,GO:0009894,GO:0009895,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010605,GO:0010639,GO:0010646,GO:0010648,GO:0010817,GO:0010821,GO:0010823,GO:0010941,GO:0012505,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0016482,GO:0017038,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019866,GO:0019898,GO:0019904,GO:0022607,GO:0022804,GO:0022857,GO:0022884,GO:0023051,GO:0023057,GO:0030029,GO:0030036,GO:0030041,GO:0030150,GO:0031090,GO:0031224,GO:0031312,GO:0031314,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031347,GO:0031348,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032780,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042886,GO:0042887,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043462,GO:0043900,GO:0043901,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044431,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045184,GO:0045934,GO:0046483,GO:0046907,GO:0048193,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051258,GO:0051336,GO:0051346,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0055085,GO:0060255,GO:0060548,GO:0065002,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0071897,GO:0072594,GO:0072655,GO:0080090,GO:0080134,GO:0090199,GO:0090201,GO:0090304,GO:0097435,GO:0098791,GO:0098796,GO:0098798,GO:0098800,GO:1900117,GO:1900118,GO:1900424,GO:1900425,GO:1901360,GO:1901362,GO:1901576,GO:1902007,GO:1902009,GO:1902288,GO:1902289,GO:1902510,GO:1902511,GO:1903624,GO:1903625,GO:1904680,GO:1990542,GO:2000012,GO:2000377,GO:2000378,GO:2001233,GO:2001234
KEGG koko:K17805,ko:K18619
Preferred namePAM16
Seed eggNOG ortholog2880.D7FSN0
Seed ortholog evalue2.2e-68
Seed ortholog score265.0
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927645.920607-UTR-E-siliculosus-1a_F_contig1135:1539..23361622927645.920607-UTR-E-siliculosus-1a_F_contig1135:1539..2336Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1135 1540..2336 -
1696318622.8639576-UTR-E-siliculosus-1a_F_contig1135:1539..23361696318622.8639576-UTR-E-siliculosus-1a_F_contig1135:1539..2336Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1135 1540..2336 -
1622927645.9862282-UTR-E-siliculosus-1a_F_contig1135:5557..57861622927645.9862282-UTR-E-siliculosus-1a_F_contig1135:5557..5786Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1135 5558..5786 -
1696318622.9112873-UTR-E-siliculosus-1a_F_contig1135:5557..57861696318622.9112873-UTR-E-siliculosus-1a_F_contig1135:5557..5786Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1135 5558..5786 -
1622927646.0001826-UTR-E-siliculosus-1a_F_contig1135:6473..65621622927646.0001826-UTR-E-siliculosus-1a_F_contig1135:6473..6562Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1135 6474..6562 -
1696318622.9223692-UTR-E-siliculosus-1a_F_contig1135:6473..65621696318622.9223692-UTR-E-siliculosus-1a_F_contig1135:6473..6562Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1135 6474..6562 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927645.9345748-CDS-E-siliculosus-1a_F_contig1135:2336..25581622927645.9345748-CDS-E-siliculosus-1a_F_contig1135:2336..2558Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1135 2337..2558 -
1696318622.876732-CDS-E-siliculosus-1a_F_contig1135:2336..25581696318622.876732-CDS-E-siliculosus-1a_F_contig1135:2336..2558Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1135 2337..2558 -
1622927645.946316-CDS-E-siliculosus-1a_F_contig1135:2983..30041622927645.946316-CDS-E-siliculosus-1a_F_contig1135:2983..3004Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1135 2984..3004 -
1696318622.8858824-CDS-E-siliculosus-1a_F_contig1135:2983..30041696318622.8858824-CDS-E-siliculosus-1a_F_contig1135:2983..3004Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1135 2984..3004 -
1622927645.9607997-CDS-E-siliculosus-1a_F_contig1135:3852..39771622927645.9607997-CDS-E-siliculosus-1a_F_contig1135:3852..3977Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1135 3853..3977 -
1696318622.8944066-CDS-E-siliculosus-1a_F_contig1135:3852..39771696318622.8944066-CDS-E-siliculosus-1a_F_contig1135:3852..3977Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1135 3853..3977 -
1622927645.9719822-CDS-E-siliculosus-1a_F_contig1135:5457..55571622927645.9719822-CDS-E-siliculosus-1a_F_contig1135:5457..5557Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1135 5458..5557 -
1696318622.9029722-CDS-E-siliculosus-1a_F_contig1135:5457..55571696318622.9029722-CDS-E-siliculosus-1a_F_contig1135:5457..5557Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1135 5458..5557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1135.892.1prot_E-siliculosus-1a_F_contig1135.892.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1135 2337..5557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1135.892.1

>prot_E-siliculosus-1a_F_contig1135.892.1 ID=prot_E-siliculosus-1a_F_contig1135.892.1|Name=mRNA_E-siliculosus-1a_F_contig1135.892.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=156bp
MANPFARIIAQLAVASAGIVSRAFVSAYSQAVHNARTGTLESAKAMSRTS
KLSTLEAMQILNLQKGEMKPDLIKQRYDQYFGINDPDKGGSFYLQSKVFR
AKEALDEQLALQAKQASEEAALKAKAAAGGKGGAGGAKARPAEGGARRPS
ANRRR*
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mRNA from alignment at E-siliculosus-1a_F_contig1135:1540..6562-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1135.892.1 ID=mRNA_E-siliculosus-1a_F_contig1135.892.1|Name=mRNA_E-siliculosus-1a_F_contig1135.892.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5023bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1135:1540..6562- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGACGTTGTTCACAACAGCAGTCGTAGTTGGCCGCGTCTTCGTGCTTGGC
GCCCCCCCTTCTATCGCTAACCTCCCCTGGTAGTTCGAGGTAAGCGCATG
GCGAGAAAAGTAGCCATTTATTGGCATTGTCGCTTGGAATATACACGTGT
GCTGCGAAGTGTTTGCGATGGTCGTGTCGTGGTCGAGCTGCAGCAGCATA
TGGGCATGTAGATTGATGCGGCGGCGCTGCAGAGATGACTAGTGATATGT
CAACCAATACGCTGACTCCCTGTTCTCTCGTCCTTTGGCTGTCTTAGGGT
GTGACGTGCCTTCTGCCTCAAACCGAGGCCCCCGTGGTTCGGTGATGCAT
AGTACTCGATTGACCGCCGCCGGTGTACTGACTGACTGCTGTCCACGGGC
GACTGGATGGGCCTGACGCAAACCGTGTACCCTTTTCCGCTTTCGTTTGG
TTTTTCTCCAAGGGTTGTTGTACCGTTCTGCCTGTGGCCCCTCTGTTTCC
CAGCCGACATGTATTTGTGCCGAACCTGTTTTCATGAATCATGCTTAGAG
GCACGTCCTGAAGTTTGTAGGGCGGTTGCACCGCTCGGTGGTCGGGGGGC
GGGGGGTTTGCAAACTGCCGTTTTGCTTTCAGCAAGAGTTTTCCAGAGTT
TTTGCTGCCTTGATGCCCGTAGGCTGCAGCACCGCCCTTGCTCTCATCCA
GCTGCCTCCGACTCACGAATACGCACCCCTGCCCGCCCTCGCGCCCACCA
ACGCCTGGTTTTTTCCAACCCTGCAGATTCTGTCTCTGAAGCAGCTGATA
TTGTCGGGGGAAATTTGTTCGCATATCGTCTCTGTGGTGACCTCTTGACC
CCGAAGAGCTCTGGGAGGGGAGGCCAGTTGCTTCAGCAGTTCTGTCGGCA
GCAGCGCGAGCGGCGAGTCAGATCTATTGCAACAGAGGCCCGCCGAACCG
AACGAGTCAAAACGAGCGAGGAAAGAAGCAGGACGCAAGAAAGGGAGCGA
GGACAATGGCTAACCCATTCGCCAGGATCATCGCTCAGCTGGCTGTGGCC
AGCGCTGGGATCGTGTCGAGAGCGTTCGTGTCCGCCTACTCCCAGGCCGT
GCACAGTGAGTCGCCACAAAAATGGTATTTTTCCAAAGCATGGTTGTAAG
CAACAGCAGCCTCTAGATTCGGACTGTTTTTGCGGCGTTTCTAAACGTGG
TAACCGTGGCCTGCTAAGTCTCCCCCTCCGCCCGGGATTGGCGTTGTCGC
GTGAGATCACCTGCCTCTTCTTAAAAGAGTTTTCAAAATCTGACGAAACC
ATTCGCCGCTGCTTTGATGTAGTTGTCGTACCTCTGTCGGACGGTGCGTA
CAAGTAAACATGATGGTAGTGATGTTAGAGACAGACCGGAGGTGCCCTCC
GCAATCTTTGCCCGTCAGCGTAGCCACTGCTGTACCGTCTCACACTGGAG
ACAGGTAATTTTTACCATCGTGCGTGCATGTAACATCCAGTTCTCCAGTT
TTTTTTTTTCTAAACGTTGAACGAAGGTCTGCGCGTTGTGACTACTGCTG
TATTAAATCGTGAGGGGGTTAAATGCGTGGCGGCGATTTTCGAATATTTT
CCTGCGGCGTTTCTCGCCTCCGTTCGCGAACATATTCTTGTGTTGGTTTG
ATTACCTTTCTTGCGTGTGTGACCTGCAGCCCGATCCCCTCCCTTTGCAC
TACGAGCTTTATTGAACACCCCAGCTGCTCTATTTACCTACGTAATGTTT
CTCACAGTTTTTGAATCGTGTTTGATGGGTCAGTGGTAGCGTCGGAGCTT
GCAAAGTGGTGCTAGAGCAGAGGCAGGGGATGGCGATCACGGGTGTGGAG
GTGATACCTCATCCACCGTGCTTCGTTGCGCATGGTCGTTGGAGGGATTG
CCGTGCGTTGCAGACGACTTGCTCCGTTTGTTCATGGTGCGAACCGTTTA
CGCCGAGAAAGAATCAGAGCACATCGGAATAGCCACGCAGTGGTTGTGCG
CAGTGTCCACCAATGAAGCGAAAAGGATCAATCAGAGAAATGGCGTCGGT
GGACGGGAAGGCACTCGCGGGCTGTTTGCATCTCGTCGCGTTTTTCGGCA
CGATGGCGTCGCGAGAGTCATCGATGAGCCGTTGTCAAAGCGAGGGATTT
CCTATTGAGACGGTGACCTCGCCGCTGTCATGAGCATCACTACCCCACAA
AGAAAATAGTAAAACCGCCAGAAAGAACGACTTCGCCACTGCTGTTTTCC
CACCCAACCTACCTTGACGGCCCCGCCCGTGTGATGCCCTTTTGGGTCGA
CCACCTTGCCCGTTGTTATGTTGTGCAATCGGGGTTGTGACTCTAATACT
GGATTTGTTAATCCGTTTGCGGGTCGATGCTAACGATTCTGCAGAGGGAT
CGGCGATAAGCCGCTCGTCGTATTTTGGTGGTCGATTTTTGCTTGTCTTA
TCGACCACCCGTTGCGTTGTCTGCAGCCTTTTCATCTTTTAGTTATGCAC
GACCTTCGAAATTGAACGTTTCGCATCGTCTGTTTCCTTTGCCCCTATCT
GTGTTTTATCTCGTACTCGACGTACCGCGGCACAGATGCGAGGACGGGTA
CCCTGGAGAGTGCGAAGGCCATGTCGAGAACGAGCAAGCTATCCACCCTC
GAGGCCATGCAGATCCTCAACCTGCAGAAAGGGGAAATGAAGCCAGATCT
CATCAAGCAGGTACCTGCGTCCCTTTGTTTCCAGCAATGCTAAAGTCTGG
CATGTGTGGTCTTGGCATAATTGTCTGACGTGTGCGATGAGTTGGCGTTC
CACGTTCTACTGCTGTGTTGCGGGATCGGTTAGCGCGTAGAGGGCTGGAG
GCGGGGGCTGGACTTTCAGGACGATTTACAATGGAACGCCAACCATCTCA
ACAGAGAGGGCGCGTATGGGTATCGTCGCGGGGCACTCTCGATCGAATAT
CTAGTTTTTTTGTATTCTGTTCTGCTAGTTCTTGAGAGCGTTGTAGCCGG
GTTCGATGCAGCCCCAGTGGCAAATACTTGTACGCTTGAAGCACGCAAGA
GATCATGCCACCGCGCGGCTGTGCTTTTTGCGCACGATGTGCTTGTTGGT
TCAGCGCGGGCCTCGCGCCACCATCGAACACTGGAGTGGTGTTGGGGCTG
TTGCTTTCTCCACGTGTAGGTCTTCCGTACGATACAACCTGTGAACGAAT
TTCCATCTATGCAGTTATCTTATCCCATCAAGACGCCCGTTCCACGTTTC
GCGGAATATGATTCTCTGGTCCGCAAGTATGACATAAAGCCACCAACCCT
CTGCTGATTCTTACCCCCAATTTTTCCAGTCTTGCACCACGATACACACC
GGCCCGTTGCTTCAGCCCTCACCGCCGTCGCCCCACTCCCGCTTTTTTCG
CTGCTGCTGCGACCGTAATATGCCCGTCGACGATGCGTATGGCGCTGGCG
TCGATACCGCCTGTGCTGCACGCGTGGAATGCCTTCTGCTGCCTTCGTTT
GGCCGGGGGCTCGGTCGTGATGCTGTGCGTCGTGGCTTCTTTTTGCGTTC
GCACGCAGCGATACGATCAGTACTTCGGGGTGAGTACGTGTGCCCAGTGG
ATCTTGCTGTGATGGGTAGAATCCTGGGTCCTCTCGTACAATGCGCCGAG
AAACCGTTATCGCTTCATGTGCATGACCTCCCGTTGGTGTGATTGCCGCT
GCCGCTGATGCTGCTCTGCTGCCATGCGGAGTGATAGAATCTCTTCGGGG
TCATGTACATGTCGTGACTTTTATCCATGCGCAGGGTTAACGTCGTCGAA
GAACTCGGTTTCTTGAATCGTGGTGATCTGTTTTGGGAGACTGACCCTCC
AATGCTTCGGCTGGTACGGGCTCTCTTTCCTCGTCGCGGTAGGGCACCCA
GCGAATATTGTCCAGGTGTAGCAGCACATGCTGGTGACCCCAATACATAA
ATGATTTATTCCCCTCGCTCCGTTCCTCGCCGTCTTTGCAACCCCACCAT
GCAGATCAACGACCCAGACAAGGGAGGATCGTTCTACCTCCAGTCCAAGG
TTTTCCGAGCCAAGGAGGCGTTGGACGAACAGCTCGCGCTGCAGGCGAAG
CAGGCGTCGGAGGAGGCGGCCCTGAAGGCCAAGGCCGCAGCCGGCGGTAA
GGGAGGTGCGGGAGGGGCGAAGGCGAGACCGGCGGAAGGGGGCGCCCGAA
GGCCTAGCGCTAACCGCCGGAGATGACAACCTTGGGATTGCGAAAAATGT
TTTTTGTTTTTGTTGTTTTCCTCCCTTGTGGGAGGGGTTGGGGGTTGTCT
TGGAGGGAGAGCGGGAATGGCGAAACATGGCGCAGATCTTTCCTCTGGGT
TGTCACTGCCCGTGTATACTTTTTTTTTGTCTTGTCTTGGGGGCGCACGA
GGTGGCGGCTGGGAAACCCTCGCGCGCCTTGACCTGGCTACGTTTTTGGA
CAGTTGGTGATATCTCAAGTCGTTGGTTCGGGCCTTCGTGAGGCTGTCTT
ACACCGAGGTTGTCTTTGCTTTCGAGGGCCGGGAGAGGCTTCATGCTCTT
GCCGGTACATGGTGCTTCGCCGTCTGCGATGACAAATCGGGAAGCCTCAG
TGGTTCTCAACATAACCGTCGACCGACGCGCTTGTGCATGCTTTGAGTTG
TGGAACCCACCTGTGGTATCTGGATATTCCTCCAATTATCTCGACCTTCG
TTCGACACTCGTATGTACCGGCGAATGCGTTTGACGTTGCTTTGCTTCTT
GGAACGCTCTCGGGAAGAGACGTCATGAGTCAATTTCTCTCGCTCGGTTT
TATGCAGGGATGTAGCCCTGCAGGAGGACTGGAGAGGCTTCGTGGGACGA
ACATACAGTTGAGGCGTCAGCTCCACGTTCTGTCCCTAGTAACTTTCGAA
GGACCCTTTATTTCGCAACATATACCATAGTGGCGGGAACGTCCTGACGT
TTGAGACATGGGTTCGACTGTCGGCGCAGTTGCATGGACCGGGATTTATC
TCACAATCGCCCAAAGAAGTGCA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1135:1540..6562-

>mRNA_E-siliculosus-1a_F_contig1135.892.1 ID=mRNA_E-siliculosus-1a_F_contig1135.892.1|Name=mRNA_E-siliculosus-1a_F_contig1135.892.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=936bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1135:1540..6562- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCTAACCCATTCGCCAGGATCATCGCTCAGCTGGCTGTGGCCAGCGC
TGGGATCGTGTCGAGAGCGTTCGTGTCCGCCTACTCCCAGGCCGTGCACA
ATGGCTAACCCATTCGCCAGGATCATCGCTCAGCTGGCTGTGGCCAGCGC
TGGGATCGTGTCGAGAGCGTTCGTGTCCGCCTACTCCCAGGCCGTGCACA
ATGCGAGGACGGGTACCCTGGAGAGTGCGAAGGCCATGTCGAGAACGAGC
AAGCTATCCACCCTCGAGGCCATGCAGATCCTCAACCTGCAGAAAGGGGA
AATGAAGCCAGATCTCATCAAGCAGATGCGAGGACGGGTACCCTGGAGAG
TGCGAAGGCCATGTCGAGAACGAGCAAGCTATCCACCCTCGAGGCCATGC
AGATCCTCAACCTGCAGAAAGGGGAAATGAAGCCAGATCTCATCAAGCAG
CGATACGATCAGTACTTCGGGCGATACGATCAGTACTTCGGGATCAACGA
CCCAGACAAGGGAGGATCGTTCTACCTCCAGTCCAAGGTTTTCCGAGCCA
AGGAGGCGTTGGACGAACAGCTCGCGCTGCAGGCGAAGCAGGCGTCGGAG
GAGGCGGCCCTGAAGGCCAAGGCCGCAGCCGGCGGTAAGGGAGGTGCGGG
AGGGGCGAAGGCGAGACCGGCGGAAGGGGGCGCCCGAAGGCCTAGCGCTA
ACCGCCGGAGATGAATCAACGACCCAGACAAGGGAGGATCGTTCTACCTC
CAGTCCAAGGTTTTCCGAGCCAAGGAGGCGTTGGACGAACAGCTCGCGCT
GCAGGCGAAGCAGGCGTCGGAGGAGGCGGCCCTGAAGGCCAAGGCCGCAG
CCGGCGGTAAGGGAGGTGCGGGAGGGGCGAAGGCGAGACCGGCGGAAGGG
GGCGCCCGAAGGCCTAGCGCTAACCGCCGGAGATGA
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