mRNA_E-siliculosus-1a_F_contig1134.886.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1134.886.1 vs. uniprot
Match: D7FQY4_ECTSI (Copper transport protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQY4_ECTSI) HSP 1 Score: 296 bits (757), Expect = 1.550e-95 Identity = 147/151 (97.35%), Postives = 149/151 (98.68%), Query Frame = 3
Query: 69 MEMDDDMSSMNMSFSFTCDVGELVFGWWTVNTCWAFYLSCIPVILLSVARHWAFAVATSTATSSKKGSASRNTALLDGNGFENSSGRPPINRWTRLVWTMVSTTGAALSLLSMLVVMTYNSGLFLAVLVGEAIGFWVWGNHSLPEAMRGCH 521
MEMDDDMSSMNMSFSFTCDVGELVFGWWTVNTCWAFYLSCIPVILLSVARHWAFA+ATSTATSSK+GSASRNTALLDGNGFENSSGRPPINRWTR VWTMVSTTGAALSLLSMLVVMTYNSGLFLAVLVGEAIGF VWGNHSLPEAMRGCH
Sbjct: 1 MEMDDDMSSMNMSFSFTCDVGELVFGWWTVNTCWAFYLSCIPVILLSVARHWAFAIATSTATSSKRGSASRNTALLDGNGFENSSGRPPINRWTRFVWTMVSTTGAALSLLSMLVVMTYNSGLFLAVLVGEAIGFGVWGNHSLPEAMRGCH 151
BLAST of mRNA_E-siliculosus-1a_F_contig1134.886.1 vs. uniprot
Match: A0A835YT31_9STRA (Copper transport protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT31_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.640e-8 Identity = 53/148 (35.81%), Postives = 76/148 (51.35%), Query Frame = 3
Query: 84 DMSSMNMSFSFTCDVG-ELVFGWWTVNTCWAFYLSCIPVILLSVARHWAFAVATSTATSSKKGSASRN-------TALLD-GNGF-------ENSSGRPPINRWTRLVWTMVSTTGAALSLLSMLVVMTYNSGLFLAVLVGEAIGFWV 479
DM M M+FS D ++++ +W V T W + LSC+ ++ L V H+ +V G A++ +AL+D G+G +G PP R RL T G AL+LL MLV MT+NSGLF+A+L G A G W+
Sbjct: 11 DMGGMAMTFSSLTDYKVKILWDFWNVTTRWQYALSCLTIVALCVLYHYIRSVEMRYTQELVAGRAAQVQAQQQDLSALMDEGSGVLAAPLLRAAKAGAPPRLRRLRLRLVAAGTAGYALALLLMLVAMTFNSGLFVALLAGWAAGQWL 158
BLAST of mRNA_E-siliculosus-1a_F_contig1134.886.1 vs. uniprot
Match: A0A8J5QNJ0_9ASCO (Copper transport protein n=1 Tax=[Candida] subhashii TaxID=561895 RepID=A0A8J5QNJ0_9ASCO) HSP 1 Score: 59.7 bits (143), Expect = 5.070e-7 Identity = 53/157 (33.76%), Postives = 73/157 (46.50%), Query Frame = 3
Query: 75 MDDDMSSMNMSFSFTCDVGELVFGWWTVNTCWAFYLSCIPVILLSVARHWAFAVATST----ATSSKKGSASRNTALLDG--NGFENSSGRPPINRWTRLVWTMVSTTGAALSLLSMLVVMTYNSGLFLAVLVGEAIGFWVWGNHSLPEAMR--GCH 521
MDDDM SMNM F++ +VF WW + T + F LS V+LL + + A + A++ + R L G GF+ VW S + MLV MTYN L +AV VG AIG ++WG+ S E++R CH
Sbjct: 16 MDDDMCSMNMIFTWDWKNTCVVFRWWHIKTYFGFVLSMFAVVLLGMGYEYVRAFFANWEREHASTVVQPGQDRRFKLRRGILYGFQ--------------VWY---------SFMLMLVFMTYNGWLMIAVAVGAAIGNYIWGSSSQQESVRIMACH 149
BLAST of mRNA_E-siliculosus-1a_F_contig1134.886.1 vs. uniprot
Match: A0A068RK52_9FUNG (Copper transport protein n=1 Tax=Lichtheimia corymbifera JMRC:FSU:9682 TaxID=1263082 RepID=A0A068RK52_9FUNG) HSP 1 Score: 60.1 bits (144), Expect = 5.840e-7 Identity = 50/156 (32.05%), Postives = 80/156 (51.28%), Query Frame = 3
Query: 69 MEMDDDMSSMNMSFSFTCDVGELVFGWWTVNTCWAFYLSCIPVILLSVARHWAFAVATSTA-------TSSKK---------GSASRNTALLDGNGFENSSGRPPINRWTRLVWTMVSTTGAALSLLSMLVVMTYNSGLFLAVLVGEAIGFWVWGN 488
M MDDDM SMNM F++ +VF WW + + +SC+ V ++A + + A S+A ++KK +A+ +T LL +G SG P ++R + +++ A+S MLV MTYN L LAV++G +G + +GN
Sbjct: 10 MPMDDDMCSMNMIFNWQIKDVCVVFEWWHIRGIPSLLISCLAVF--AIAACFEYVRARSSALEQTWLNVNAKKRQDDEEITTNNANESTTLLQPSG----SGNPRLSRHQHMALSVIYAFLVAISFWLMLVFMTYNGFLMLAVVLGAGVGHYFFGN 159
BLAST of mRNA_E-siliculosus-1a_F_contig1134.886.1 vs. uniprot
Match: Q6FQY3_CANGA (Copper transport protein n=2 Tax=Candida glabrata TaxID=5478 RepID=Q6FQY3_CANGA) HSP 1 Score: 56.6 bits (135), Expect = 9.820e-6 Identity = 53/160 (33.12%), Postives = 72/160 (45.00%), Query Frame = 3
Query: 78 DDDMSSMNMSFSFTCDVGELVFGWWTVNTCWAFYLSCIPVILLS---------VARHWAFAVATSTATSSKKGSASRNTALLDGNGFENSSGRPPINRW--TRLVWTMVSTTGAALSLLSMLVVMTYNSGLFLAVLVGEAIGFWVWGNHSLPEA-MRGCH 521
DDDM +M+M F++ +VF WW + T LSCI + L++ + R + A T+TS+ GS + S P R+ +R +W V S L MLV MTYN L LAV+VG G + WG PEA CH
Sbjct: 33 DDDMCAMSMVFTWNYKNTCVVFNWWKIKTLHGLLLSCIAIALITGFYEYLKFYLYRKNRDSEAVVTSTSATNGSLN--------------SPSPLTKRYAVSRSLWYGVQ---VGYSFLLMLVFMTYNGWLMLAVVVGAIWGHYHWGIRCTPEAGTLACH 175
BLAST of mRNA_E-siliculosus-1a_F_contig1134.886.1 vs. uniprot
Match: A0A1D1YNN7_9ARAE (Copper transport protein n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YNN7_9ARAE) HSP 1 Score: 54.7 bits (130), Expect = 4.980e-5 Identity = 43/153 (28.10%), Postives = 73/153 (47.71%), Query Frame = 3
Query: 93 SMNMSFSFTCDVGELVFGWWTVNTCWAFYLSCIPVILLS--------VARHWAFAVATSTATSSKKGSASRNTALLDGNGFENSSGRPPINRWTRLVWTMVSTTGAALSLLSMLVVMTYNSGLFLAVLVGEAIGFWVWGNHSLPEAMRG--CH 521
SMNM F++ + ++F WW+VN+ LSC+ VI L+ V R + + TS+ + ++G + + N I LV T + T LS ML+ MTYN L ++V++G A+G++V+ ++ + CH
Sbjct: 35 SMNMLFNWDTERLCIIFSWWSVNSIGFLILSCLVVIFLAASFEFLKLVLRKYDSKIYTSSHSQLQEGRDTNPEEVASQNNVIR------ITYTQHLVRTFIHTAQVFLSFFLMLIFMTYNGFLMISVIIGAAVGYFVFAKQTIESGGKSLACH 181
BLAST of mRNA_E-siliculosus-1a_F_contig1134.886.1 vs. uniprot
Match: A0A8H2ZHV1_9SACH (Copper transport protein n=1 Tax=Kazachstania barnettii TaxID=61262 RepID=A0A8H2ZHV1_9SACH) HSP 1 Score: 53.9 bits (128), Expect = 6.820e-5 Identity = 45/147 (30.61%), Postives = 74/147 (50.34%), Query Frame = 3
Query: 93 SMNMSFSFTCDVGELVFGWWTVNTCWAFYLSCIPVILLSVARHWAFAVATSTATSSKKGSASRNTALLDGNGFENSSGRPPINRWTRLVWTMVSTTGAALSLLSMLVVMTYNSGLFLAVLVGEAIGFWVWGNH--SLPEAMRG--CH 521
SMNM F+++ +VF WW + T F +SC+ I++ +A ++ + +S+ +++R + +G+G + R R T+ S + MLV MTYN L LAV+VG A+G++ W + SLP R CH
Sbjct: 26 SMNMLFTWSYKDTCVVFNWWHIRTRLQFIISCL--IVVGLATYYEYLKFRFVKYASETTASNRVSTTTNGSGVSQIARREKFYR------TIHYGIQVGFSFMLMLVFMTYNGWLMLAVVVGAALGYYRWNDSLVSLPMEQRSLACH 164 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1134.886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1134.886.1 >prot_E-siliculosus-1a_F_contig1134.886.1 ID=prot_E-siliculosus-1a_F_contig1134.886.1|Name=mRNA_E-siliculosus-1a_F_contig1134.886.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=152bp MEMDDDMSSMNMSFSFTCDVGELVFGWWTVNTCWAFYLSCIPVILLSVARback to top mRNA from alignment at E-siliculosus-1a_F_contig1134:11317..17342+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1134.886.1 ID=mRNA_E-siliculosus-1a_F_contig1134.886.1|Name=mRNA_E-siliculosus-1a_F_contig1134.886.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6026bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1134:11317..17342+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1134:11317..17342+ >mRNA_E-siliculosus-1a_F_contig1134.886.1 ID=mRNA_E-siliculosus-1a_F_contig1134.886.1|Name=mRNA_E-siliculosus-1a_F_contig1134.886.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=912bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1134:11317..17342+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |