mRNA_E-siliculosus-1a_F_contig11302.866.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11302.866.1
Unique NamemRNA_E-siliculosus-1a_F_contig11302.866.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig11302.866.1 vs. uniprot
Match: A0A6H5L6E3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E3_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 9.470e-5
Identity = 20/31 (64.52%), Postives = 26/31 (83.87%), Query Frame = 3 
Query:  117 CTKQPVFNHAGSQTGVYCRRHAEESMVDVHS 209
            CT+QP FN  GS+T ++CR+HAEESMVDV +
Sbjct:    9 CTRQPSFNAEGSKTAMFCRQHAEESMVDVRN 39
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11302.866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L6E3_9PHAE9.470e-564.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11302contigE-siliculosus-1a_F_contig11302:88..392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size114
Model size305
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 orthologEc-13_001030.1
Ec32 ortholog descriptionHypothetical protein
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927638.8990712-CDS-E-siliculosus-1a_F_contig11302:87..2011622927638.8990712-CDS-E-siliculosus-1a_F_contig11302:87..201Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11302 88..201 -
1696318621.20596-CDS-E-siliculosus-1a_F_contig11302:87..2011696318621.20596-CDS-E-siliculosus-1a_F_contig11302:87..201Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11302 88..201 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927638.9142-UTR-E-siliculosus-1a_F_contig11302:201..3921622927638.9142-UTR-E-siliculosus-1a_F_contig11302:201..392Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11302 202..392 -
1696318621.2163765-UTR-E-siliculosus-1a_F_contig11302:201..3921696318621.2163765-UTR-E-siliculosus-1a_F_contig11302:201..392Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig11302 202..392 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11302.866.1prot_E-siliculosus-1a_F_contig11302.866.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11302 88..201 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11302.866.1

>prot_E-siliculosus-1a_F_contig11302.866.1 ID=prot_E-siliculosus-1a_F_contig11302.866.1|Name=mRNA_E-siliculosus-1a_F_contig11302.866.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=38bp
MVDVHSKRCAHAGGCGTRPIWGYWADGKGTVCAKHKGD
back to top

mRNA from alignment at E-siliculosus-1a_F_contig11302:88..392-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11302.866.1 ID=mRNA_E-siliculosus-1a_F_contig11302.866.1|Name=mRNA_E-siliculosus-1a_F_contig11302.866.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=305bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11302:88..392- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGCACGGCAAAGGCGTCGTTTAACCACGAGGGAAGAAATAACGCTTTGTA
CTGCAGTCGACATGCCGACGACTCCATGGTGAACGTGGTGGCAAGCGTTG
CGCCCACGCTGAAGGGTGCACGAAGCAGCCGGTTTTCAACCACGCCGGCA
GCCAGACGGGGGTGTACTGCAGACGGCATGCCGAGGAGTCCATGGTGGAC
GTGCATAGCAAGCGTTGCGCCCACGCTGGAGGTTGCGGAACTCGTCCGAT
TTGGGGGTACTGGGCAGACGGGAAGGGTACGGTATGCGCCAAACACAAAG
GCGAC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11302:88..392-

>mRNA_E-siliculosus-1a_F_contig11302.866.1 ID=mRNA_E-siliculosus-1a_F_contig11302.866.1|Name=mRNA_E-siliculosus-1a_F_contig11302.866.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=228bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11302:88..392- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTGGACGTGCATAGCAAGCGTTGCGCCCACGCTGGAGGTTGCGGAAC
TCGTCCGATTTGGGGGTACTGGGCAGACGGGAAGGGTACGGTATGCGCCA
AACACAAAGGCGACATGGTGGACGTGCATAGCAAGCGTTGCGCCCACGCT
GGAGGTTGCGGAACTCGTCCGATTTGGGGGTACTGGGCAGACGGGAAGGG
TACGGTATGCGCCAAACACAAAGGCGAC
back to top