mRNA_E-siliculosus-1a_F_contig1130.863.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1130.863.1
Unique NamemRNA_E-siliculosus-1a_F_contig1130.863.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1130.863.1 vs. uniprot
Match: D7FNT4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNT4_ECTSI)

HSP 1 Score: 443 bits (1139), Expect = 5.570e-142
Identity = 228/231 (98.70%), Postives = 229/231 (99.13%), Query Frame = 3 
Query: 2577 ASDEVEQRSPVAGSLLRALTGPYVSLGVGVGILLAVLANRIATPELVDSQARTDILGVIASGGLVTNGVYLLDLKVKEAEEVTLVGTFVQEYADDLAPGARRDLQWLGESLLLVSPAKSMLVYQDGKTLARVGVMGESADIRDAPILRKCIGEGRDGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLEGSAVVVVGTNRARAFTPKDIVWMKGLCNQAALSLREAVVA 3269
            ASDEVEQRSPVAGSL+RALTGPYVSLGVGVGILLAVLANRIATPELVDSQARTDILGVIASGGLVTNGVYLLDLKVKEAEEVTLVGTFVQEYADDLAPGARRDLQWLGESLLLVSPA SMLVYQDGKTLARVGVMGESADIRDAPILRKCI EGRDGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLEGSAVVVVGTNRARAFTPKDIVWMKGLCNQAALSLREAVVA
Sbjct:   62 ASDEVEQRSPVAGSLIRALTGPYVSLGVGVGILLAVLANRIATPELVDSQARTDILGVIASGGLVTNGVYLLDLKVKEAEEVTLVGTFVQEYADDLAPGARRDLQWLGESLLLVSPATSMLVYQDGKTLARVGVMGESADIRDAPILRKCISEGRDGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLEGSAVVVVGTNRARAFTPKDIVWMKGLCNQAALSLREAVVA 292
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1130.863.1 vs. uniprot
Match: A0A835YLX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLX2_9STRA)

HSP 1 Score: 207 bits (527), Expect = 4.200e-56
Identity = 118/219 (53.88%), Postives = 145/219 (66.21%), Query Frame = 3 
Query: 2610 AGSLLRALTGPYVSLGVGVGILLAVLANRIA-TPELVDSQARTDILGVIASGGLVTNGVYLLDLKVKEAEEVTLVGTFVQEYADDLAPGARRDLQWLGESLLLVSPAK-SMLVYQDGKTLARVGVMGESADIRDA--PILRKCIGEG-RDGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLEGSAVVVVGTNRARAFTPKDIVWMKGLCNQAALSL 3251
            +G ++R LTG   SL  G+  L A+L NR+A TP L DSQARTDIL +IASGGL+ NGVYLLDL +K A+ VTLVGTF QE    L+      L+WL ESL+L  PA  S+LV+ DG+T AR GVMG  A   DA  PI+ K + E  R  +E YL  LQ LPGK+EF YLP NCQ V++  VL G   VVVG ++ARA+TP+DI WMK    +A   L
Sbjct:   84 SGGIIRQLTGSNFSLAAGLLGLAAILINRLALTPYLYDSQARTDILALIASGGLIMNGVYLLDLDIKVADSVTLVGTFEQELDPTLSAEQAAQLRWLCESLILAKPATASVLVHVDGRTRARYGVMGGGATTVDAGAPIMAKALREAARSDKEVYLPVLQNLPGKIEFTYLPANCQGVVIQGVLGGRGAVVVGASQARAYTPRDIAWMKAASERATALL 302
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1130.863.1 vs. uniprot
Match: R1DVS8_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DVS8_EMIHU)

HSP 1 Score: 145 bits (366), Expect = 4.170e-35
Identity = 91/243 (37.45%), Postives = 136/243 (55.97%), Query Frame = 3 
Query: 2553 PPPPCNFQASDEVEQR--SPVAGSLLRALTGPYVSLGVGVGILLAVLANRIATPELVDSQARTDILGVIASGGLVTNGVYLLDLKVKEAEEVTLVGTFVQEYADDLAPG-ARRDLQWLGESLLLVSPAKSMLVYQ-DGKTLARVGVM------GESADIRDAPILRKCIGEGRDGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLEGSAVVVVGTNRARAFTPKDIVWMKGLCNQAALSL 3251
            PPPP        +  R  SP A  LLR L  P VSL  G  +LLA++ NR+AT EL++SQ+R D++  +    L+ +G+  L +   E E V+L G    ++ D +  G ARR+L W  ++L     A S+ +++  G TLA  G++        +A +   P+L+KC G    G  +YL ALQ LPG+VEF Y PE  QA+LM+P+   S VVV+G +R RAF  +D+ W + +  +   +L
Sbjct:   14 PPPPIARPCGVALTPRCGSPHASGLLRRLRSPEVSLVAGGSLLLALVVNRLATEELLNSQSRADLIATVGPVLLMLDGLSNLAITPAEPEPVSLAGGVAVDWLDPVVSGDARRELAWATDALGAGLGASSVAIWRAGGGTLAACGLLTPRAAASPAAAVVPGPLLQKCAGSAT-GAPEYLPALQLLPGRVEFSYFPEATQALLMVPLGGRSGVVVLGADRKRAFGAEDVAWARAIAGRLGAAL 255
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1130.863.1 vs. uniprot
Match: UPI0019F7C38E (Cofactor assembly of complex C subunit B n=1 Tax=Pleurocapsales cyanobacterium LEGE 10410 TaxID=1828828 RepID=UPI0019F7C38E)

HSP 1 Score: 142 bits (357), Expect = 1.780e-34
Identity = 79/213 (37.09%), Postives = 127/213 (59.62%), Query Frame = 3 
Query: 2619 LLRALTGPYVSLGVGVGILLAVLANRIATPELVDSQARTDILGVIASGGLVTNGVYLLDLKVKEAEEVTLVGTFVQEYADDLAPGARRDLQWLGESLLLVSPAKSMLVYQDGKTLARVGVMGESADIRDAPILRKCIGEGRDGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLEGSAVVVVGTNRARAFTPKDIVWMKGLCNQAALSLRE 3257
            +LR L  P+ + G+G G LL  L NR+ T ++ DSQAR+D LGVI    L+  G+    ++ K  + VTL+G    E+A +L+  A+ +L W    LL  +  +S++VY DG T+ R GV+G+++ ++   IL + + + +     YL  L   PGKVEFDYLPEN Q V+  P+     V+++G N  R++T KD  W++G+ ++ A++L  
Sbjct:    9 ILRLL--PFFAGGLG-GFLL--LINRLLTAQITDSQARSDALGVIEGAVLILVGLLWQQIQAKTPDTVTLIGETGLEFASELSEVAKTELAWASHLLLTNTVTRSLVVYYDGITMLRRGVLGKNSQVKPGAILERALSKAKP---VYLVNLNLYPGKVEFDYLPENTQGVICQPI-GNKGVLILGANAPRSYTKKDEQWIEGIADKLAVTLNS 212
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1130.863.1 vs. uniprot
Match: L8LI26_9CHRO (Uncharacterized protein n=1 Tax=Gloeocapsa sp. PCC 73106 TaxID=102232 RepID=L8LI26_9CHRO)

HSP 1 Score: 141 bits (356), Expect = 2.220e-34
Identity = 76/213 (35.68%), Postives = 128/213 (60.09%), Query Frame = 3 
Query: 2619 LLRALTGPYVSLGVGVGILLAVLANRIATPELVDSQARTDILGVIASGGLVTNGVYLLDLKVKEAEEVTLVGTFVQEYADDLAPGARRDLQWLGESLLLVSPAKSMLVYQDGKTLARVGVMGESADIRDAPILRKCIGEGRDGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLEGSAVVVVGTNRARAFTPKDIVWMKGLCNQAALSLRE 3257
            +LR L  P VS G+G  +LL    NR++T EL +SQAR+D+LGVI S  L+  G+    ++ +  E VTL+G    E    L    + +L W    LL  +  +S+++Y +G+ L R G++G++A ++  PI+ +C+   +  +  YL +L+  PG +EFDYLPEN Q V+  P L    V+++G N  R++T +D  W++G+ ++ A++L +
Sbjct:    9 ILRLL--PLVSGGLGGALLLF---NRLSTLELTNSQARSDVLGVILSALLILVGLLWQQIQSRNPESVTLIGEEGFELDPQLPDSVKTELAWASHLLLTNTVTRSVVIYYEGRVLLRRGILGKTAQVKPGPIIHRCL---KTSKPVYLVSLKLYPGGIEFDYLPENTQGVICQP-LGKEGVMILGANAPRSYTKQDETWIEGIADKLAITLAQ 212
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1130.863.1 vs. uniprot
Match: A0A8J6RIB7_9CYAN (Cofactor assembly of complex C subunit B n=2 Tax=Cyanobacteria/Melainabacteria group TaxID=1798711 RepID=A0A8J6RIB7_9CYAN)

HSP 1 Score: 141 bits (355), Expect = 4.650e-34
Identity = 80/206 (38.83%), Postives = 121/206 (58.74%), Query Frame = 3 
Query: 2640 PYVSLGVGVGILLAVLANRIATPELVDSQARTDILGVIASGGLVTNGVYLLDLKVKEAEEVTLVGTFVQEYADDLAPGARRDLQWLGESLLLVSPAKSMLVYQDGKTLARVGVMGESADIRDAPILRKCIGEGRDGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLEGSAVVVVGTNRARAFTPKDIVWMKGLCNQAALSLRE 3257
            P V+ G+G G LL  L NR+ TP L +SQAR+D++GVI S  L+  G+    ++    E VTL+G    E  D L   A+ +L W    LL  +  +S++VY+ GKTL R G++   A++   PILR+ +     G+  YL  L   PG+VEFDYLPEN Q V+  P+ +G A+++   N  R++T +D  W++G+ ++   SL E
Sbjct:   14 PLVTGGLG-GTLL--LINRVLTPALTESQARSDVMGVILSALLILTGLLWQRVQPTLPEAVTLIGAEGLELDDALPDAAKTELAWASHLLLTNTVTRSVVVYRQGKTLLRRGILAPKAEVTPGPILRRVL---ETGKAVYLVKLSIYPGRVEFDYLPENTQGVICQPMGQGGALILAA-NAPRSYTRQDEAWIEGIADKLGHSLGE 212
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1130.863.1 vs. uniprot
Match: A0A1Z4RSL5_9CHRO (Uncharacterized protein n=1 Tax=Chondrocystis sp. NIES-4102 TaxID=2005460 RepID=A0A1Z4RSL5_9CHRO)

HSP 1 Score: 139 bits (349), Expect = 2.220e-33
Identity = 80/213 (37.56%), Postives = 130/213 (61.03%), Query Frame = 3 
Query: 2619 LLRALTGPYVSLGVGVGILLAVLANRIATPELVDSQARTDILGVIASGGLVTNGVYLLDLKVKEAEEVTLVGTFVQEYADDLAPGARRDLQWLGESLLLVSPAKSMLVYQDGKTLARVGVMGESADIRDAPILRKCIGEGRDGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLEGS-AVVVVGTNRARAFTPKDIVWMKGLCNQAALSLR 3254
            +LR L  P+ + GV  G+LL  L NR+ T +L DSQAR+D LGVI    L+  G+    ++ K  + VTL+G    E   +L   A+ +L W    L+  +  +S++VY  GKT+ R GV+G+++ ++   I+++ + +G+     YL  L   PGKVEFDYLPEN Q V+  P+  GS  V+++G N  R++T +D VW++G+ ++ A++L+
Sbjct:    9 ILRLL--PFFAGGVS-GLLL--LVNRLLTTQLTDSQARSDALGVIEGAVLILVGLLWQQIQAKPPDTVTLIGETGLELDSELPQTAKLELAWASHLLITNTVTRSLVVYYAGKTILRRGVLGKNSQVKPGAIVQRVLTQGKP---VYLVNLNLYPGKVEFDYLPENTQGVICQPI--GSLGVLILGANAPRSYTKQDEVWIEGIADKLAVTLK 211
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1130.863.1 vs. uniprot
Match: UPI0016848F88 (cofactor assembly of complex C subunit B n=1 Tax=Richelia sinica TaxID=1357545 RepID=UPI0016848F88)

HSP 1 Score: 138 bits (347), Expect = 3.890e-33
Identity = 79/218 (36.24%), Postives = 123/218 (56.42%), Query Frame = 3 
Query: 2598 RSPVAGSLLRALTGPYVSLGVGVGILLAVLANRIATPELVDSQARTDILGVIASGGLVTNGVYLLDLKVKEAEEVTLVGTFVQEYADDLAPGARRDLQWLGESLLLVSPAKSMLVYQDGKTLARVGVMGESADIRDAPILRKCIGEGRDGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLEGSAVVVVGTNRARAFTPKDIVWMKGLCNQAALSL 3251
            + P    +LR L  P    G+G  +LL    NR+ TPEL DSQAR D+LGVI S  L+  G+    ++ +  E V L+G      A++L    + +L W    LL  +  +S++VY  GK L R G++G  ++I   PI+++ +   +     YL ALQ  PGK+EFDYLPEN Q V+  P+ E   V+++G N  R++T +D  W+  + ++ A++L
Sbjct:    2 KKPDPNGVLRLL--PLAVGGLGATLLLV---NRLLTPELTDSQARGDVLGVILSAVLILTGLIWQQVQPRSPEVVELMGEEGFFLAENLPEAVKTELAWASHILLTNTVTRSLVVYYQGKVLLRRGILGSKSEITPGPIVQRVLATKKP---VYLVALQIYPGKIEFDYLPENTQGVICQPIGE-QGVIILGANAPRSYTKQDENWISAISDKLAVTL 210
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1130.863.1 vs. uniprot
Match: UPI00034BD926 (cofactor assembly of complex C subunit B n=1 Tax=Pleurocapsa sp. PCC 7319 TaxID=118161 RepID=UPI00034BD926)

HSP 1 Score: 138 bits (347), Expect = 4.000e-33
Identity = 78/217 (35.94%), Postives = 132/217 (60.83%), Query Frame = 3 
Query: 2610 AGSLLRALTGPYVSLGVGVGILLAVLANRIATPELVDSQARTDILGVIASGGLVTNGVYLLDLKVKEAEEVTLVGTFVQEYADDLAPGARRDLQWLGESLLLVSPAKSMLVYQDGKTLARVGVMGESADIRDAPILRKCIGEGRDGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLEGSAVVVVGTNRARAFTPKDIVWMKGLCNQAALSLREA 3260
            A  +LR L  P  + G+G G+LL  L NR+ T +L DSQAR+D LG+I    L+  G+    ++ +  + VTLVG    E+A +L+  A+ +L W  + LL  +  +S++VY D +T+ R GV+GE++ ++   I+++ I + +     YL  L   PGKVEFDYLPEN Q ++  P+ +   V+++G N  R++T +D  W++G+ ++ A++L  +
Sbjct:    6 ANYILRLL--PIFAGGLG-GLLL--LINRLLTIQLTDSQARSDALGIIEGAVLILVGLLWQQIQARTPDTVTLVGETGLEFAPELSEVAKTELAWASQLLLTNTVTRSLVVYYDDQTILRRGVLGENSQVKPGAIVQRVISKNKP---VYLVNLNLYPGKVEFDYLPENTQGLICQPIGD-RGVLILGANAPRSYTKQDEKWIEGIADKLAVTLANS 213
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1130.863.1 vs. uniprot
Match: A0A2T1CRW1_9CYAN (Cofactor assembly of complex C subunit B n=1 Tax=Pleurocapsa sp. CCALA 161 TaxID=2107688 RepID=A0A2T1CRW1_9CYAN)

HSP 1 Score: 137 bits (346), Expect = 5.150e-33
Identity = 80/214 (37.38%), Postives = 125/214 (58.41%), Query Frame = 3 
Query: 2610 AGSLLRALTGPYVSLGVGVGILLAVLANRIATPELVDSQARTDILGVIASGGLVTNGVYLLDLKVKEAEEVTLVGTFVQEYADDLAPGARRDLQWLGESLLLVSPAKSMLVYQDGKTLARVGVMGESADIRDAPILRKCIGEGRDGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLEGSAVVVVGTNRARAFTPKDIVWMKGLCNQAALSL 3251
            A  +LR L  P+ + G+G G LL  L NR+ T ++ DSQAR+D LGVI    L+  G+    ++ +  + V L+G    E  + L+  A+ +L W    LL  +  +S+LVY DGKT+ R GV G+++ ++   IL + I +G+     YL  L   PGK+EFDYLPEN Q V+  P+    A+++ G N  R++T KD  W+ G+ ++ A++L
Sbjct:    6 ANRILRLL--PFFAGGLG-GFLL--LINRLLTAQITDSQARSDALGVIEGAVLILVGLLWQQIQGRTPDTVDLIGETGLELDESLSESAQTELAWASHLLLTNTVTRSLLVYYDGKTILRRGVFGKNSQVKPGAILERAIAKGKP---VYLVNLSLYPGKLEFDYLPENTQGVICQPIGTQGALIL-GANAPRSYTKKDEQWIAGIADKLAVTL 210
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1130.863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNT4_ECTSI5.570e-14298.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YLX2_9STRA4.200e-5653.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
R1DVS8_EMIHU4.170e-3537.45Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
UPI0019F7C38E1.780e-3437.09Cofactor assembly of complex C subunit B n=1 Tax=P... [more]
L8LI26_9CHRO2.220e-3435.68Uncharacterized protein n=1 Tax=Gloeocapsa sp. PCC... [more]
A0A8J6RIB7_9CYAN4.650e-3438.83Cofactor assembly of complex C subunit B n=2 Tax=C... [more]
A0A1Z4RSL5_9CHRO2.220e-3337.56Uncharacterized protein n=1 Tax=Chondrocystis sp. ... [more]
UPI0016848F883.890e-3336.24cofactor assembly of complex C subunit B n=1 Tax=R... [more]
UPI00034BD9264.000e-3335.94cofactor assembly of complex C subunit B n=1 Tax=P... [more]
A0A2T1CRW1_9CYAN5.150e-3337.38Cofactor assembly of complex C subunit B n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1130contigE-siliculosus-1a_F_contig1130:12114..17782 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size927
Model size4028
Exons4
Ec32 orthologEc-12_003460.1
Ec32 ortholog descriptionProtein of unknown function DUF2930
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs28KGG@1,2QSXP@2759
EggNOG free text desc.Cofactor assembly of complex C subunit B, CCB2/CCB4
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009536,GO:0009987,GO:0010190,GO:0016043,GO:0017004,GO:0022607,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0071840
Preferred nameCCB4
Seed eggNOG ortholog2880.D7FNT4
Seed ortholog evalue5.8e-121
Seed ortholog score440.7
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1130.863.1prot_E-siliculosus-1a_F_contig1130.863.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1130 14459..17026 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927638.2124472-UTR-E-siliculosus-1a_F_contig1130:12113..144581622927638.2124472-UTR-E-siliculosus-1a_F_contig1130:12113..14458Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1130 12114..14458 +
1696318620.902357-UTR-E-siliculosus-1a_F_contig1130:12113..144581696318620.902357-UTR-E-siliculosus-1a_F_contig1130:12113..14458Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1130 12114..14458 +
1622927638.2805774-UTR-E-siliculosus-1a_F_contig1130:17026..177821622927638.2805774-UTR-E-siliculosus-1a_F_contig1130:17026..17782Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1130 17027..17782 +
1696318620.9528465-UTR-E-siliculosus-1a_F_contig1130:17026..177821696318620.9528465-UTR-E-siliculosus-1a_F_contig1130:17026..17782Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1130 17027..17782 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927638.225959-CDS-E-siliculosus-1a_F_contig1130:14458..149051622927638.225959-CDS-E-siliculosus-1a_F_contig1130:14458..14905Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1130 14459..14905 +
1696318620.9147587-CDS-E-siliculosus-1a_F_contig1130:14458..149051696318620.9147587-CDS-E-siliculosus-1a_F_contig1130:14458..14905Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1130 14459..14905 +
1622927638.2399821-CDS-E-siliculosus-1a_F_contig1130:15401..155241622927638.2399821-CDS-E-siliculosus-1a_F_contig1130:15401..15524Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1130 15402..15524 +
1696318620.9257872-CDS-E-siliculosus-1a_F_contig1130:15401..155241696318620.9257872-CDS-E-siliculosus-1a_F_contig1130:15401..15524Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1130 15402..15524 +
1622927638.253122-CDS-E-siliculosus-1a_F_contig1130:15876..160351622927638.253122-CDS-E-siliculosus-1a_F_contig1130:15876..16035Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1130 15877..16035 +
1696318620.9357088-CDS-E-siliculosus-1a_F_contig1130:15876..160351696318620.9357088-CDS-E-siliculosus-1a_F_contig1130:15876..16035Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1130 15877..16035 +
1622927638.2656085-CDS-E-siliculosus-1a_F_contig1130:16828..170261622927638.2656085-CDS-E-siliculosus-1a_F_contig1130:16828..17026Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1130 16829..17026 +
1696318620.9440336-CDS-E-siliculosus-1a_F_contig1130:16828..170261696318620.9440336-CDS-E-siliculosus-1a_F_contig1130:16828..17026Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1130 16829..17026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1130.863.1

>prot_E-siliculosus-1a_F_contig1130.863.1 ID=prot_E-siliculosus-1a_F_contig1130.863.1|Name=mRNA_E-siliculosus-1a_F_contig1130.863.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=309bp
MFPTTALWKLLPGLLLAPYPGEQKMVCSASVLQLHSLNARVFSNGWLPCV
SPTMPMDNFRSTVNLSLSLPPPPCNFQASDEVEQRSPVAGSLLRALTGPY
VSLGVGVGILLAVLANRIATPELVDSQARTDILGVIASGGLVTNGVYLLD
LKVKEAEEVTLVGTFVQEYADDLAPGARRDLQWLGESLLLVSPAKSMLVY
QDGKTLARVGVMGESADIRDAPILRKCIGEGRDGREQYLAALQTLPGKVE
FDYLPENCQAVLMLPVLEGSAVVVVGTNRARAFTPKDIVWMKGLCNQAAL
SLREAVVA*
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mRNA from alignment at E-siliculosus-1a_F_contig1130:12114..17782+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1130.863.1 ID=mRNA_E-siliculosus-1a_F_contig1130.863.1|Name=mRNA_E-siliculosus-1a_F_contig1130.863.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5669bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1130:12114..17782+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACGGCGGTGGTCTACTGCTTAGTTGTAGCTGCGGTGGGGGTAACAAAAAA
AAGAAAAAAAAAGCGTCTGCCGTCCATGTTGCACTACAACATCAAGACGA
CATACACTACTGCTGTAGCGTCGACCGACACATGATCGGCACCCCCGACA
CAGGGGACGAAGGTTGCCGTTCTAGTCTCTAGCAGGTAATCATGGCGATA
AAGGCCTGTATAGTAGCAGGCTTGGCGGTGGTGCAATGGACTCCGGCACA
GGCATTCGGAGCAGTTTCTCACGTCAGCTCTGCTCTACGACCGATGTCGT
GTCGGGCAGTGGCCGACCCCACGAGTCACAACAACAAGCGGAGCGTCTCT
AGACGACCGAGGGCTGTCACCATGGTGGGTACGATGTTGGGTGCTGTCTT
TAACCCTCCTGTCTTGGGGCGTTTAGTTCGAAAGACATTGGGGCGTGTGC
TGAAGGAAAGCAGCCACTTTCCTGTTGTAGCACCAACTGCAAAAGGGTAG
CAGCAACTTCTACTACAAGAATGGGTAGTCTTTCCGTGGTACATGCCGTG
CTGCTGTACCTGCTGGATGGAGCTAACTTGGCGATCGGTCTCTGTGGGTG
ATATGCATTCTGGCTTTGCTGCATATACTGGAGTGTGAGGTCCCAAAACG
CCGTCGATGGTGCTAGCCATAGCAATGATATTCACCGTTGCATGCGTATT
TTTTCAGCATGTCGGGTCGTCCGGAATCATCAAGGTCAAATGGCACAATC
TTCCAAATACGAGTACCTTGTAGTATAGCAGGAGACATGATTTTACAGCA
CGAGCTACATGTATGATGCTACAACGATGGGGTGCCCTGAATATATCGCC
GGTATGCATACGTGCCCGGCGCATCGATGGGCGATATTCAATGTACAGAA
TGACTTAGTGATTTCGTCCGTGCCCAGCAATCCACCCACCCAGGCCACCG
CGCTAATCGTTGTTGACGCCCCCCCACTGATGTAGCTGTGTACCACGTGC
AGTCTACAAGCAAAGTCAAGAGTTCACCCGCTCTACTTACTGCTTGCAGC
ACACCCACACCGGTGTACCAGTCGTCTTTCATCGTGGCCATGTATTGTAT
AATGGAGCAATTGTTTAGTGTTGCCACTTTACCCCTACGCCATTGGCACG
GGCACGTTTTTTGTAATCCGTACGTCACAATACTTCTGGAGCACACCCAG
AGCGTCCCTGAACACCCCGAGCACAGCGGGTGATTTGCTGCTTGCGTGGG
TCCTCCGGTCCGTTGATGTTGTGACCAAGGTGCACATGCTACAGAGCGGA
ATGACACACCTAGGCTACAGCGGCATGGGCACTGCTGTGTAAAACGACAA
GCGTGGCCGATGCTACAAAAGTATTTTGAGTCGAACATTGCCCCCCCCCC
CCTGAACACCAGCGCTGCAAAAAATGAGCATACTTTCTGTCTCTAGGCGA
CATGGAGGCATCCCGTGGGATTGAGAAATCCACCGCTCTATGCGACAGTT
CCCAGAACTAGCAAGCGGAGAGGCTGCACAGAACAACACAGAAAGAAGCC
AGCAGCATTCTTTGTTATCGAGCCTGTGCTCATGCCGTCAACCCGAATAC
CTCGTACTCGATTTCACGCGTGCAGCATTGGCACTGCAGTATCACTCCTC
CTCCTCCTCTGCTGCTGCTGCTGCTGCCGCTGTGTTGTTCGTGATTGAGG
CCACTGTACCTGCTGTACGCCCAGAGAGCTGAGAAAGCTAAAGTTTACCC
GCCTGCCTGGCCATCAGGACTTCATTCTTAGGGAAACGAGACCTTGCTCA
ACATTTTCACGCATTGCACCCGCAATAGGTGGTTATGTTATGTTGCTTAC
CTTTGGAGACTTCCCTCTAGGGTTGCCTAGGCGTTTGCCCCTCTTCTTAG
CGGTTTGGAGGGCCAGCGCGTGGCGGGCGATTGTTTTCACCTGACGTTTT
GTGCGTCCCACGCACTCTCACGTGGTAGGATCGTTTACTATCAACGTTTG
TGCGTCCCCACGCACTCACCTGGTATACGTGCGCCTACGCCGGGCCCGTT
GAGACAAGCAAGCTGATTGGCCGACGCAAGTGCGCAGAGTTTGACAACAA
ACAGGCCAGGGGAGACGAGAATCGACCGCTGCAAGCATGCCTTGGTGCAG
TTTGTCAGGAGTGAACGTTTGGCCCTCGAAAGGCTAGCCCCGGGCCTCGC
CGCACCGAACAAGCTACGCGACTGTTGACGCCGAGAGCCGCGGTTCCTGG
ATTTCGATGTCCCAGACCTGGCTGAAGAAAGCCCACGGAACGAACGTTAT
TGTCAGCTGGCCTACATGTGACGCTCCATCTTGCGTGTCGCTGTCATGTT
TCCCACGACGGCCCTTTGGAAGCTTTTGCCTGGTCTGCTCTTGGCACCGT
ACCCCGGTGAACAAAAAATGGTTTGTAGCGCGAGTGTCTTGCAGCTACAC
TCGCTCAATGCTCGTGTTTTTTCAAACGGTTGGCTGCCTTGCGTGTCCCC
CACCATGCCGATGGACAATTTTAGGTCCACCGTTAACTTGAGCCTGTCTC
TGCCCCCCCCACCTTGCAATTTCCAGGCCAGCGACGAGGTCGAGCAACGC
TCCCCGGTGGCCGGGAGCCTTCTCCGAGCACTAACGGGCCCCTATGTTTC
GCTCGGAGTTGGCGTTGGCATTCTGTTGGCCGTTCTGGCCAATCGAATCG
CCACTCCGGAGCTGGTCGATTCACAAGCTCGCACGGATATCCTCGGGGTG
ATCGCGAGCGGGGGATTGGTTACGAACGGCGTTTACCTCTTGGTGGGTGT
AAAAAACTTTCGTGCCCGGCGATTGACTCCTGAGGCAACGCGGCCACGAG
AAAGAGTTGTAGCTAGGAGGTGTTCAAGCTCTCTTCGTCTTTTCGATACA
GATTCCTTTTCATTCGAGCTTCACACGCTACGGTGAAGTACAAATGTCTT
CGGAGCGTAGGCAAGAACTCAGCTCCACACTTTCACCGTATTTGTTGAAG
ACACGAGCATGCTGCGCTTGTCGTACACATCGGCTTATGCGAGGACACAC
TAGGTGCCTTGGTTGTGTCTTGGTTTTGTTAACACCCCTGGCGTGTAGTG
CCCACGTGCGTAGAACAGTGGTACTAACCACCATCCCAATGAGGAACGTG
ACCCTGACTCTTGCGAGCTACTTCATAACAGAAGGCCGACCTCGATTCCC
TCAACATGAATGCCCGAGTATCATAGTACTCTGGCTGCAGGCACCATCCA
TGATGATTGTTTCGTATTCCATATCGTTCGTCCGACAGGATTTGAAGGTG
AAGGAGGCGGAAGAAGTGACGCTGGTGGGCACGTTCGTGCAGGAGTACGC
CGACGATCTCGCTCCCGGCGCTAGGCGAGATTTGCAGTGGCTTGGCGAGT
CTTTGTTGTTGGTGAGTGAATTGGCGAGCGGCGACTGATCCTTCCCGCGG
AACGCGTCGCCGGTGTGCTTCGCGTAAGCGGCGTTCCCTATGAACGGTAG
TTATCGTTGTAGGCATTGTGTAACGCCACACCACCATTGATGTATTAGAT
TGATTTGGGCTCCTCCCATGCTGCCCAGCCCCGTGGTATTGGTAAAGGTA
CCCCCTTCCCCCTTGCCCCAGTGTGGCCGCAATGAGTGCTACTGCCAAAC
TTTGCGCATCCGGAACTCAGAATTTCCGACTATGCAAGCGCCTATTCACT
GTTCCATTGTTGCATTTTTTCCCTCCTTCCTCCCCTGCCCCCCAAACGCG
ATCTCGGCAAAAGGTGTCGCCTGCAAAATCAATGCTGGTTTACCAGGATG
GGAAGACGCTGGCGCGGGTTGGGGTGATGGGAGAGTCCGCCGACATACGG
GACGCTCCTATTCTTAGAAAATGCATTGGTGAAGGACGCGATGGGCGGGA
ACAGTACTTGGCCGCTCTCCAGGTTTGTTTTTCCGCTTGCCGTCTTGTTT
TTGTTTTGAATGTGCCCACCAGGCTGCCCACGTTCGTACGGTCTCTTGGT
TACATGGTGATACTATTCGCCCGATACTGGTTTCTGCAGCTGGTACCTCC
AGGCTCAACATAGTGATCCCATCACATCGGAAGGTGTTCCGGCATATGTA
CCAAACCACTAAAATCAGCACATTTTTTTGCTGCAGCCTGGGCATTGGTC
TCTTGTAGCCACTTTTGCCGCGAGGAACGTTAAACAGGCCGTGATGTGGC
TATCTCGTTCGCTTCGAGTGGGAAGCCGCTTGTTTGCCTCTTGACTTCGC
GGGCACACCTGTGCAGACTGACTGCAAGCACAGCAGTGACATGCAGGGCA
GCTTATCCCTCTGGGCGTGTCTGTGCTTCTCGACGTTCTACCACATTCAC
GGTATATTCTGCAAGCGCTCCTGATTGCCGAGGAAAGCCGGGGGGGGGGG
GGGGGGGGGGGGGGGAACCCACTTAGGGCAAAAAACAACCACCGTCCTCG
CCTCTCCCCTTCGTTTCTCGTCTTTTCACTAACGCTGGGTCCCTTTCNNN
NNNNNNNTCTGCTTCCCTCCGGCGTCCCCGCTCTGGGGCGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGTGAGGTAACCAGCTTAGAGCAAACATCAACCATCGTCCTCGCCTCT
CTCCTTCGTATCTCGTCTTGTCACTAACGCTGTGCTCTCTTCGAATACGA
ACGCCGTTCACGCAGACTCTTCCGGGAAAGGTCGAGTTCGACTATCTCCC
GGAAAATTGCCAGGCAGTGCTAATGCTGCCCGTTCTGGAGGGGTCGGCAG
TCGTCGTGGTAGGAACGAACCGGGCGCGCGCGTTCACGCCCAAGGACATC
GTGTGGATGAAGGGGCTTTGCAACCAAGCGGCATTGTCACTGCGGGAGGC
GGTGGTGGCTTGAATTTTGTACATGTGCTCCAAGCGTAGAATTGTTGTGG
ACGGGTATGATTTGTTTCAGCGTGCTATCCCTCTGCTCTTGTGTACATAC
ACGGCCGCTGTTGGAGTTGGAGTTGGATCGGCGTAGGATTTGAACAGCGG
ACTCAAAGAGTTTTGTGATTGTGTGTTTCGTGGCTACTGTTTTGAAACAG
GCGGCAAGACTTGCTGAGCCGACAGAGCGTCCTAGATTGATTTTTTGAAG
CGTGGTCGCCCCTACTGACAAAACTGCTTTGCTGGGCACGTTCCGGCTAG
ATTCGATGTGTCTGGTTCGCCTGGCGATGGTAACGTGGTCACCCCCCCAA
ATGATACTGCTTTTGTATTGCTTATGTAGTAAAACGCATTCCAATGGAAA
ACGCGAGTGGCTCATCGCCTTGCTGGCTTCGTCCCACACTTGATGCCACG
TGGGACATCCAACACGCGGGGAACTTTCTCCTTCCAGTGGGACCAGTCCA
GAAGACGGAGCTTGTTGTGGGCCTCGCAGAAGTCTATTTATGTATGTAGT
TGGCAACCTAAACCTTGAGAAACCCTCTCTCTGTGGTGTTGTCTGTGTGG
GGTCGAAACGTGGAATTCGACTGTGGACGAAGAAAATTTGGTTGCCTACC
GTACGCCAGAAAGTAAGGTTAAGGTTTGGCGCCTCTGGAAGGGGAGTTTT
GTATTTGCCGCGACGAACAATATCGGCTCAAGGGTGGCACGCGACAACAG
CAGTTCGAAGAAGACTAAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1130:12114..17782+

>mRNA_E-siliculosus-1a_F_contig1130.863.1 ID=mRNA_E-siliculosus-1a_F_contig1130.863.1|Name=mRNA_E-siliculosus-1a_F_contig1130.863.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1854bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1130:12114..17782+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTTCCCACGACGGCCCTTTGGAAGCTTTTGCCTGGTCTGCTCTTGGC
ACCGTACCCCGGTGAACAAAAAATGGTTTGTAGCGCGAGTGTCTTGCAGC
TACACTCGCTCAATGCTCGTGTTTTTTCAAACGGTTGGCTGCCTTGCGTG
TCCCCCACCATGCCGATGGACAATTTTAGGTCCACCGTTAACTTGAGCCT
GTCTCTGCCCCCCCCACCTTGCAATTTCCAGGCCAGCGACGAGGTCGAGC
AACGCTCCCCGGTGGCCGGGAGCCTTCTCCGAGCACTAACGGGCCCCTAT
GTTTCGCTCGGAGTTGGCGTTGGCATTCTGTTGGCCGTTCTGGCCAATCG
AATCGCCACTCCGGAGCTGGTCGATTCACAAGCTCGCACGGATATCCTCG
GGGTGATCGCGAGCGGGGGATTGGTTACGAACGGCGTTTACCTCTTGATG
TTTCCCACGACGGCCCTTTGGAAGCTTTTGCCTGGTCTGCTCTTGGCACC
GTACCCCGGTGAACAAAAAATGGTTTGTAGCGCGAGTGTCTTGCAGCTAC
ACTCGCTCAATGCTCGTGTTTTTTCAAACGGTTGGCTGCCTTGCGTGTCC
CCCACCATGCCGATGGACAATTTTAGGTCCACCGTTAACTTGAGCCTGTC
TCTGCCCCCCCCACCTTGCAATTTCCAGGCCAGCGACGAGGTCGAGCAAC
GCTCCCCGGTGGCCGGGAGCCTTCTCCGAGCACTAACGGGCCCCTATGTT
TCGCTCGGAGTTGGCGTTGGCATTCTGTTGGCCGTTCTGGCCAATCGAAT
CGCCACTCCGGAGCTGGTCGATTCACAAGCTCGCACGGATATCCTCGGGG
TGATCGCGAGCGGGGGATTGGTTACGAACGGCGTTTACCTCTTGGATTTG
AAGGTGAAGGAGGCGGAAGAAGTGACGCTGGTGGGCACGTTCGTGCAGGA
GTACGCCGACGATCTCGCTCCCGGCGCTAGGCGAGATTTGCAGTGGCTTG
GCGAGTCTTTGTTGTTGGATTTGAAGGTGAAGGAGGCGGAAGAAGTGACG
CTGGTGGGCACGTTCGTGCAGGAGTACGCCGACGATCTCGCTCCCGGCGC
TAGGCGAGATTTGCAGTGGCTTGGCGAGTCTTTGTTGTTGGTGTCGCCTG
CAAAATCAATGCTGGTTTACCAGGATGGGAAGACGCTGGCGCGGGTTGGG
GTGATGGGAGAGTCCGCCGACATACGGGACGCTCCTATTCTTAGAAAATG
CATTGGTGAAGGACGCGATGGGCGGGAACAGTACTTGGCCGCTCTCCAGG
TGTCGCCTGCAAAATCAATGCTGGTTTACCAGGATGGGAAGACGCTGGCG
CGGGTTGGGGTGATGGGAGAGTCCGCCGACATACGGGACGCTCCTATTCT
TAGAAAATGCATTGGTGAAGGACGCGATGGGCGGGAACAGTACTTGGCCG
CTCTCCAGACTCTTCCGGGAAAGGTCGAGTTCGACTATCTCCCGGAAAAT
TGCCAGGCAGTGCTAATGCTGCCCGTTCTGGAGGGGTCGGCAGTCGTCGT
GGTAGGAACGAACCGGGCGCGCGCGTTCACGCCCAAGGACATCGTGTGGA
TGAAGGGGCTTTGCAACCAAGCGGCATTGTCACTGCGGGAGGCGGTGGTG
GCTTGAACTCTTCCGGGAAAGGTCGAGTTCGACTATCTCCCGGAAAATTG
CCAGGCAGTGCTAATGCTGCCCGTTCTGGAGGGGTCGGCAGTCGTCGTGG
TAGGAACGAACCGGGCGCGCGCGTTCACGCCCAAGGACATCGTGTGGATG
AAGGGGCTTTGCAACCAAGCGGCATTGTCACTGCGGGAGGCGGTGGTGGC
TTGA
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