mRNA_E-siliculosus-1a_F_contig11273.847.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig11273.847.1
Unique NamemRNA_E-siliculosus-1a_F_contig11273.847.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig11273.847.1 vs. uniprot
Match: D7G3D8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D8_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 6.030e-40
Identity = 78/104 (75.00%), Postives = 78/104 (75.00%), Query Frame = 3 
Query:    6 RRASEPLERERTGANSQLQVHDNEPDRGPSAEIVCFEGCCPSPDV*PQETGVTDAQKASGV*EG-----RKA---------------GRGGGRPKQEATGSQKT 257
            RRASEPLERERTGANSQLQVHDNEPDRGPSAEIVCFEGCCPS DV PQETGV D QKASGV EG     RK                GRGGGRPKQEATGSQKT
Sbjct:   14 RRASEPLERERTGANSQLQVHDNEPDRGPSAEIVCFEGCCPSQDVKPQETGVADVQKASGVQEGHDIPRRKRHPXXXXXXXXXXXXXGRGGGRPKQEATGSQKT 117
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BLAST of mRNA_E-siliculosus-1a_F_contig11273.847.1 vs. uniprot
Match: D7FNW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW9_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 3.500e-21
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:  202 RRAGGVEGQSKKRPARRKRSEKPRENSEVGVRVSKRGRVIKKNVTLQDQGYS 357
            RRAGGVEGQSKKRPARRKRSE PRENSEVGVRVSKRGRVIKKNVTLQDQGYS
Sbjct:  156 RRAGGVEGQSKKRPARRKRSEIPRENSEVGVRVSKRGRVIKKNVTLQDQGYS 207
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BLAST of mRNA_E-siliculosus-1a_F_contig11273.847.1 vs. uniprot
Match: A0A6H5K6M3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M3_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 4.400e-10
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:  214 GVEGQSKKRPARRKRSEKPRENSEVGVRVSKRGRVIKKNVTLQDQGY 354
            GVE + KK  ARR+R E PRENSEVGVRV+KRGR+IK NVTLQDQGY
Sbjct: 1283 GVERKRKKGLARRRRCETPRENSEVGVRVNKRGRLIKSNVTLQDQGY 1329
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig11273.847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G3D8_ECTSI6.030e-4075.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FNW9_ECTSI3.500e-2198.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6M3_9PHAE4.400e-1076.60Reverse transcriptase Ty1/copia-type domain-contai... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig11273contigE-siliculosus-1a_F_contig11273:824..1183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size360
Model size361
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927635.765901-CDS-E-siliculosus-1a_F_contig11273:823..11831622927635.765901-CDS-E-siliculosus-1a_F_contig11273:823..1183Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11273 824..1183 +
1696318619.6174552-CDS-E-siliculosus-1a_F_contig11273:823..11831696318619.6174552-CDS-E-siliculosus-1a_F_contig11273:823..1183Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig11273 824..1183 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig11273.847.1prot_E-siliculosus-1a_F_contig11273.847.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig11273 824..1183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig11273.847.1

>prot_E-siliculosus-1a_F_contig11273.847.1 ID=prot_E-siliculosus-1a_F_contig11273.847.1|Name=mRNA_E-siliculosus-1a_F_contig11273.847.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=120bp
DIVERASRSSESEQARTLNYKYTTMNQIEGRARKLSASRDAARLQMFNLR
RLASRMRRKLQEYKKEERRAGGVEGQSKKRPARRKRSEKPRENSEVGVRV
SKRGRVIKKNVTLQDQGYS*
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mRNA from alignment at E-siliculosus-1a_F_contig11273:824..1183+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig11273.847.1 ID=mRNA_E-siliculosus-1a_F_contig11273.847.1|Name=mRNA_E-siliculosus-1a_F_contig11273.847.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=360bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11273:824..1183+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GATATCGTCGAGCGAGCGAGCCGCTCGAGCGAGAGCGAACAGGCGCGAAC
TCTCAACTACAAGTACACGACAATGAACCAGATCGAGGGCCGAGCGCGGA
AATTGTCTGCTTCGAGGGATGCTGCCCGTCTCCAGATGTTTAACCTCAGG
AGACTGGCGTCACGGATGCGCAGAAAGCTTCAGGAGTATAAGAAGGAAGA
AAGGCGGGCAGGGGGGGTGGAAGGCCAAAGCAAGAAGCGACCGGCTCGCA
GAAAACGTAGCGAGAAACCACGCGAGAACTCGGAAGTAGGGGTCCGCGTG
AGTAAGCGGGGTAGAGTGATCAAGAAAAACGTAACCCTACAAGACCAAGG
CTACTCGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig11273:824..1183+

>mRNA_E-siliculosus-1a_F_contig11273.847.1 ID=mRNA_E-siliculosus-1a_F_contig11273.847.1|Name=mRNA_E-siliculosus-1a_F_contig11273.847.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=720bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig11273:824..1183+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GATATCGTCGAGCGAGCGAGCCGCTCGAGCGAGAGCGAACAGGCGCGAAC
TCTCAACTACAAGTACACGACAATGAACCAGATCGAGGGCCGAGCGCGGA
AATTGTCTGCTTCGAGGGATGCTGCCCGTCTCCAGATGTTTAACCTCAGG
AGACTGGCGTCACGGATGCGCAGAAAGCTTCAGGAGTATAAGAAGGAAGA
AAGGCGGGCAGGGGGGGTGGAAGGCCAAAGCAAGAAGCGACCGGCTCGCA
GAAAACGTAGCGAGAAACCACGCGAGAACTCGGAAGTAGGGGTCCGCGTG
AGTAAGCGGGGTAGAGTGATCAAGAAAAACGTAACCCTACAAGACCAAGG
CTACTCGTAGGATATCGTCGAGCGAGCGAGCCGCTCGAGCGAGAGCGAAC
AGGCGCGAACTCTCAACTACAAGTACACGACAATGAACCAGATCGAGGGC
CGAGCGCGGAAATTGTCTGCTTCGAGGGATGCTGCCCGTCTCCAGATGTT
TAACCTCAGGAGACTGGCGTCACGGATGCGCAGAAAGCTTCAGGAGTATA
AGAAGGAAGAAAGGCGGGCAGGGGGGGTGGAAGGCCAAAGCAAGAAGCGA
CCGGCTCGCAGAAAACGTAGCGAGAAACCACGCGAGAACTCGGAAGTAGG
GGTCCGCGTGAGTAAGCGGGGTAGAGTGATCAAGAAAAACGTAACCCTAC
AAGACCAAGGCTACTCGTAG
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