mRNA_E-siliculosus-1a_F_contig1125.829.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1125.829.1
Unique NamemRNA_E-siliculosus-1a_F_contig1125.829.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1125.829.1 vs. uniprot
Match: D8LCB7_ECTSI (All0748 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB7_ECTSI)

HSP 1 Score: 503 bits (1296), Expect = 3.560e-172
Identity = 313/323 (96.90%), Postives = 315/323 (97.52%), Query Frame = 3 
Query:   57 MGRDSALAAVALAVALLSRQSLGFHIPAASSRRSLQQRSPHSXXXXXXXXXXXPTLPTRSLLRCPLAAEADXXXXXXXXXXXXXXXXXXXXXAAKKAKARGGAGPAVELKKDANKQPQEVSKSVVAEVLGAQAAKEGGATADQVSARKEIERMETEERERIAKRQERIDSVMQAKAATEGDPDAGSIPEIVSNRMLSRMVPFFLLPALGGVGVFVAVYVLSHKYDYTIPAYIVAYATQAPFFVALAGITYAIMSASWDEDREGTFFGFDEAKRNFGNIVEGLRRSSDRMDVEDMLADQERMTMNRRQRRQMRKEDGGDDEPTA 1025
            MGRDSALAAVAL VALLSRQSLGFHIPA SSRRSLQQRSPHS XXXXXXXXXXPTLPTRSLLR PLAAEADXXXXXXXXXXXXXXXXXXXXXAAKKAKARGGAGPAVELKK ANKQPQEVSKSVVAEVLGAQAAKEGGATADQVSARKEIERME EERERIAKRQERIDSVMQAKAATEGDPDAGSIPEIVSNRMLSRMVPFF+LPALGGVGVFV VYVLSHKYDYTIPAYIVAYATQAPFFVALAGITYAIMSASWDEDREGTFFGFDEAKRNFGNIVEGLRRSSDRMDVEDMLADQERM+MNRRQRRQMRKEDGGDDEP A
Sbjct:    1 MGRDSALAAVALVVALLSRQSLGFHIPATSSRRSLQQRSPHSAXXXXXXXXXXPTLPTRSLLRFPLAAEADXXXXXXXXXXXXXXXXXXXXXAAKKAKARGGAGPAVELKKAANKQPQEVSKSVVAEVLGAQAAKEGGATADQVSARKEIERMEAEERERIAKRQERIDSVMQAKAATEGDPDAGSIPEIVSNRMLSRMVPFFVLPALGGVGVFVTVYVLSHKYDYTIPAYIVAYATQAPFFVALAGITYAIMSASWDEDREGTFFGFDEAKRNFGNIVEGLRRSSDRMDVEDMLADQERMSMNRRQRRQMRKEDGGDDEPAA 323
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BLAST of mRNA_E-siliculosus-1a_F_contig1125.829.1 vs. uniprot
Match: A0A6H5L0S3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0S3_9PHAE)

HSP 1 Score: 419 bits (1076), Expect = 4.870e-139
Identity = 270/300 (90.00%), Postives = 273/300 (91.00%), Query Frame = 3 
Query:   57 MGRDSALAAVALAVALLSRQSLGFHIPAASSRRSLQQRSPHSXXXXXXXXXXXPTLPTRSLLRCPLAAEADXXXXXXXXXXXXXXXXXXXXXAAKKAKARGGAGPAVELKKDANKQPQEVSKSVVAEVLGAQAAKEGGATADQVSARKEIERMETEERERIAKRQERIDSVMQAKAATEGDPDAGSIPEIVSNRMLSRMVPFFLLPALGGVGVFVAVYVLSHKYDYTIPAYIVAYATQAPFFVALAGITYAIMSASWDEDREGTFFGFDEAKRNFGNIVEGLRRSSDRMDVEDMLADQER 956
            MGRDSALAAVA+AVALLSRQ LGFHIPAASSRRSLQQRSPH XXXXXXXXXXX                  XXXXXXXXXXXXXXXXXX   A+KKAKARGGAGPAVELKK ANKQPQEVSKSVVAEVLGAQAAKEGG+TADQVSARK IERME EERERIAKRQERIDSVMQAKAATEGDPDAGSIPEIVSNRMLSRMVPFFLLPALGGVGVFVAVYVLSHKYDYTIPAYIVAYATQAPFFVALAGITYAIMSASWDEDREGTFFGFDEAKRNFGNIVEGLRRSSDRMDVEDMLADQ R
Sbjct:    1 MGRDSALAAVAVAVALLSRQGLGFHIPAASSRRSLQQRSPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRKASKKAKARGGAGPAVELKKAANKQPQEVSKSVVAEVLGAQAAKEGGSTADQVSARKAIERMEAEERERIAKRQERIDSVMQAKAATEGDPDAGSIPEIVSNRMLSRMVPFFLLPALGGVGVFVAVYVLSHKYDYTIPAYIVAYATQAPFFVALAGITYAIMSASWDEDREGTFFGFDEAKRNFGNIVEGLRRSSDRMDVEDMLADQAR 300
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BLAST of mRNA_E-siliculosus-1a_F_contig1125.829.1 vs. uniprot
Match: A0A835Z7Y5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Y5_9STRA)

HSP 1 Score: 166 bits (421), Expect = 3.310e-43
Identity = 87/176 (49.43%), Postives = 133/176 (75.57%), Query Frame = 3 
Query:  489 SARKEIERMETEERERIAKRQERIDSVMQAKAATEGDPDAGSIPEIVSNRMLSRMVPFFLLPALGGVGVFVAVYVLSHKYDYTIPAYIVAYATQAPFFVALAGITYAIMSASWDEDREGTFFGFDEAKRNFGNIVEGLRRSSDRMDVEDMLADQERMTMNRRQRRQMRKEDGGDDE 1016
            +A++++ RM+ E   R+  +++R+  +  A+A T+ +PDAG IP++V+NRML+RM+PFF+LP L GVGVFV  +VL+ +YD +    +VA+ATQAPF ++L GITYAI+SASWD +REG+  GFDE + N G I+EGLRRSS+R ++++ L +QE+  +NR +RR  R++ GG D+
Sbjct:   94 AAKEDLARMKEERERRVQAQKQRMADIKAAQAITKDNPDAGVIPDLVANRMLARMIPFFVLPVLAGVGVFVYFFVLAKRYDTSFQPGMVAFATQAPFAISLVGITYAILSASWDPEREGSALGFDEFRSNAGAILEGLRRSSERQELDEQLEEQEKR-VNRAERR--RQKGGGSDD 266
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BLAST of mRNA_E-siliculosus-1a_F_contig1125.829.1 vs. uniprot
Match: A0A6U0UN43_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0UN43_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.830e-29
Identity = 70/179 (39.11%), Postives = 110/179 (61.45%), Query Frame = 3 
Query:  405 PQEVSKSVVAEVLGAQAAKEGGATADQVSARKEIERMETEERERIAKRQERIDSVMQAKAATEGDPDAGSIPEIVSNRMLSRMVPFFLLPALGGVGVFVAVYVLSHKYDYTIPAYIVAYATQAPFFVALAGITYAIMSASWDEDREGTFFGFDEAKRNFGNIVEGLRRSSDRMDVEDML 941
            PQE++     EV  AQ++     TA Q    +E++++      + A+R  ++D  ++ +A    +P AG IP+ VS RML RMVP F LP + G+  FVA Y    K    +   +VAY+TQAPFF+ L G++Y ++SASWDED EG+F G +E + N G + +G++R+++R D+ED +
Sbjct:   68 PQEINVGAAEEVNLAQSSARDNLTAGQ----QELQQLRQARASKDAERAAKVDMYVEERAEIRKNPRAGVIPDAVSKRMLGRMVPLFSLPFVLGIAAFVAFYFYGQKTGNQMQPTVVAYSTQAPFFLGLVGLSYGVLSASWDEDEEGSFLGIEEFQTNVGRLFDGVQRAAERRDLEDEI 242
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BLAST of mRNA_E-siliculosus-1a_F_contig1125.829.1 vs. uniprot
Match: A0A7S2STX2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STX2_9STRA)

HSP 1 Score: 116 bits (291), Expect = 9.330e-26
Identity = 55/123 (44.72%), Postives = 81/123 (65.85%), Query Frame = 3 
Query:  549 QERIDSVMQAKAATEGDPDAGSIPEIVSNRMLSRMVPFFLLPALGGVGVFVAVYVLSHKYDYTIPAYIVAYATQAPFFVALAGITYAIMSASWDEDREGTFFGFDEAKRNFGNIVEGLRRSSD 917
            Q R++ + + +     +PDAG IPE+V+ RML RM+P   +P  GG+ +FV  Y+ + K+D  I   +VAYAT AP+ + LAG+TY I+SASWD + EG+F G +E K N   I +GLRR+ +
Sbjct:   98 QRRLEDMKEVEKVLRENPDAGVIPEVVAQRMLGRMLPLAAVPIFGGIALFVGFYIAATKWDLEIQPTVVAYATTAPWLLGLAGLTYGILSASWDPEVEGSFLGTEEVKLNLSRIADGLRRAGE 220
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BLAST of mRNA_E-siliculosus-1a_F_contig1125.829.1 vs. uniprot
Match: A0A0G4F121_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F121_VITBC)

HSP 1 Score: 108 bits (271), Expect = 6.810e-23
Identity = 57/142 (40.14%), Postives = 88/142 (61.97%), Query Frame = 3 
Query:  597 DPDAGSIPEIVSNRMLSRMVPFFLLPALGGVGVFVAVYVLSHKYDYTIPAYIVAYATQAPFFVALAGITYAIMSASWDEDREGTFFGFDEAKRNFGNIVEGLRRSSDRMDVEDMLADQERMTMNRRQRRQ----MRKEDGGD 1010
            D +AG++PE+VS R++SR+VPFFL P       F+  ++L  ++DY I   I+AY TQ  F +AL G++Y I+S+SW+EDREG+F+G DE KRN   +  G+R++    +    +  +  M +  RQ +Q    +R   GGD
Sbjct:  113 DGNAGTMPEVVSQRIISRIVPFFLTPLAFAFSTFIGGFLLYSQFDYRIEPSIIAYITQFSFLLALGGVSYGILSSSWEEDREGSFWGADEFKRNIKRVASGVRQTVKDTETRQRMETRRDMVIKYRQDQQAMDDIRGRGGGD 254
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BLAST of mRNA_E-siliculosus-1a_F_contig1125.829.1 vs. uniprot
Match: A0A7S2BKL3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BKL3_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.110e-21
Identity = 63/167 (37.72%), Postives = 93/167 (55.69%), Query Frame = 3 
Query:  504 IERMETEERERIAKRQERIDSVMQAKAATEGDPDAGSIPEIVSNRMLSRMVPFFLLPALGGVGVFVAVYVLSHKYDYTIPAYIVAYATQAPFFVALAGITYAIMSASWDEDREGTFFGFDEAKRNFGNIVEGLRRSSDRMDVEDMLADQERMT---MNRRQRRQMRK 995
            + ++  +  E +AK  ER   + + + A + +P AG IPE V+NRML RM+     P  GG+G+FV  Y+ + ++D  +   IVA AT  P+ + LAG+TY ++SASWD + EG+  G DE K N   I  G+ RS    +  +    Q+R      NR QRRQ  K
Sbjct:   81 LTKLRAQREEDLAKADERYAELSEVQEALKENPAAGVIPEAVANRMLKRMLTLAAPPIFGGIGLFVVFYISATQWDTDVAPPIVAAATTVPWLLGLAGLTYGVLSASWDPEVEGSALGLDEFKENLKIIGAGVLRSGQDSEFREQYEYQQRKNNAPANREQRRQDEK 247
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BLAST of mRNA_E-siliculosus-1a_F_contig1125.829.1 vs. uniprot
Match: A0A7S2NSH2_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2NSH2_9EUKA)

HSP 1 Score: 103 bits (257), Expect = 8.240e-21
Identity = 50/95 (52.63%), Postives = 64/95 (67.37%), Query Frame = 3 
Query:  597 DPDAGSIPEIVSNRMLSRMVPFFLLPALGGVGVFVAVYVLSHKYDYTIPAYIVAYATQAPFFVALAGITYAIMSASWDEDREGTFFGFDEAKRNF 881
            DP AG +PE+VS RML+R+VPF  LP  GG  VFV  Y  + + +  +P  IVAYATQ    ++ AGITY +MS SWDE++EGT  G +  KRNF
Sbjct:  139 DPSAGVMPEVVSQRMLNRVVPFAALPVFGGALVFVGFYYANTQLELDVPPMIVAYATQVLLLLSFAGITYGVMSTSWDEEKEGTLLGTENLKRNF 233
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BLAST of mRNA_E-siliculosus-1a_F_contig1125.829.1 vs. uniprot
Match: R1FQ09_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FQ09_EMIHU)

HSP 1 Score: 102 bits (253), Expect = 1.810e-20
Identity = 49/104 (47.12%), Postives = 69/104 (66.35%), Query Frame = 3 
Query:  597 DPDAGSIPEIVSNRMLSRMVPFFLLPALGGVGVFVAVYVLSHKYDYTIPAYIVAYATQAPFFVALAGITYAIMSASWDEDREGTFFGFDEAKRNFGNIVEGLRR 908
            DP AG +PE+VSNRMLSR+VPF  LP  G   VFV  Y  + + D  +P  ++AYATQA F ++ AGIT+ ++S SWDE+ EG+  G ++  RN   + +G+ R
Sbjct:  113 DPSAGVMPEVVSNRMLSRVVPFAGLPVFGSFLVFVGAYYANTQLDLDVPPQVIAYATQACFALSFAGITWGVLSTSWDEETEGSLLGTEQVGRNVAMMRDGMAR 216
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BLAST of mRNA_E-siliculosus-1a_F_contig1125.829.1 vs. uniprot
Match: W7TZB0_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZB0_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.020e-19
Identity = 47/101 (46.53%), Postives = 69/101 (68.32%), Query Frame = 3 
Query:  609 GSIPEIVSNRMLSRMVPFFLLPALGGVGVFVAVYVLSHKYDYTIPAYIVAYATQAPFFVALAGITYAIMSASWDEDREGTFFGFDEAKRNFGNIVEGLRRS 911
            G +PE +SNRML R++PF L P LGG+G+F     L+   +  +P   VA++TQ PF  AL GITY+IMS SW+ + EG+F+GF E K N  N+++ L+++
Sbjct:  171 GYLPERISNRMLKRLLPFILFPVLGGIGLFGFYLYLAKNTEIDVPPAFVAFSTQVPFLAALVGITYSIMSTSWEPEVEGSFWGFTEFKANVLNLLDSLQKT 271
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1125.829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCB7_ECTSI3.560e-17296.90All0748 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5L0S3_9PHAE4.870e-13990.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z7Y5_9STRA3.310e-4349.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U0UN43_9STRA1.830e-2939.11Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2STX2_9STRA9.330e-2644.72Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0G4F121_VITBC6.810e-2340.14Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S2BKL3_9STRA3.110e-2137.72Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2NSH2_9EUKA8.240e-2152.63Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
R1FQ09_EMIHU1.810e-2047.12Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
W7TZB0_9STRA1.020e-1946.53Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1125contigE-siliculosus-1a_F_contig1125:1455..7435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size972
Model size2060
Exons7
Ec32 orthologEc-14_005350.1
Ec32 ortholog descriptionProtein of unknown function DUF3464
Hectar predicted targeting categorysignal peptide
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2AEZ6@1,2RXKE@2759
EggNOG free text desc.Protein of unknown function (DUF3464)
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Seed eggNOG ortholog2880.D8LCB7
Seed ortholog evalue9.1e-141
Seed ortholog score506.5
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927632.2541957-UTR-E-siliculosus-1a_F_contig1125:1454..24861622927632.2541957-UTR-E-siliculosus-1a_F_contig1125:1454..2486Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1125 1455..2486 -
1696318618.27688-UTR-E-siliculosus-1a_F_contig1125:1454..24861696318618.27688-UTR-E-siliculosus-1a_F_contig1125:1454..2486Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1125 1455..2486 -
1622927632.5136442-UTR-E-siliculosus-1a_F_contig1125:7379..74351622927632.5136442-UTR-E-siliculosus-1a_F_contig1125:7379..7435Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1125 7380..7435 -
1696318618.3723137-UTR-E-siliculosus-1a_F_contig1125:7379..74351696318618.3723137-UTR-E-siliculosus-1a_F_contig1125:7379..7435Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1125 7380..7435 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927632.2660232-CDS-E-siliculosus-1a_F_contig1125:2486..25641622927632.2660232-CDS-E-siliculosus-1a_F_contig1125:2486..2564Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1125 2487..2564 -
1696318618.28946-CDS-E-siliculosus-1a_F_contig1125:2486..25641696318618.28946-CDS-E-siliculosus-1a_F_contig1125:2486..2564Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1125 2487..2564 -
1622927632.2798927-CDS-E-siliculosus-1a_F_contig1125:3156..32701622927632.2798927-CDS-E-siliculosus-1a_F_contig1125:3156..3270Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1125 3157..3270 -
1696318618.299176-CDS-E-siliculosus-1a_F_contig1125:3156..32701696318618.299176-CDS-E-siliculosus-1a_F_contig1125:3156..3270Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1125 3157..3270 -
1622927632.3036761-CDS-E-siliculosus-1a_F_contig1125:3752..38571622927632.3036761-CDS-E-siliculosus-1a_F_contig1125:3752..3857Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1125 3753..3857 -
1696318618.309737-CDS-E-siliculosus-1a_F_contig1125:3752..38571696318618.309737-CDS-E-siliculosus-1a_F_contig1125:3752..3857Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1125 3753..3857 -
1622927632.3178256-CDS-E-siliculosus-1a_F_contig1125:4270..43481622927632.3178256-CDS-E-siliculosus-1a_F_contig1125:4270..4348Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1125 4271..4348 -
1696318618.3307593-CDS-E-siliculosus-1a_F_contig1125:4270..43481696318618.3307593-CDS-E-siliculosus-1a_F_contig1125:4270..4348Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1125 4271..4348 -
1622927632.3301365-CDS-E-siliculosus-1a_F_contig1125:4791..48691622927632.3301365-CDS-E-siliculosus-1a_F_contig1125:4791..4869Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1125 4792..4869 -
1696318618.3428843-CDS-E-siliculosus-1a_F_contig1125:4791..48691696318618.3428843-CDS-E-siliculosus-1a_F_contig1125:4791..4869Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1125 4792..4869 -
1622927632.484386-CDS-E-siliculosus-1a_F_contig1125:5497..55761622927632.484386-CDS-E-siliculosus-1a_F_contig1125:5497..5576Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1125 5498..5576 -
1696318618.35721-CDS-E-siliculosus-1a_F_contig1125:5497..55761696318618.35721-CDS-E-siliculosus-1a_F_contig1125:5497..5576Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1125 5498..5576 -
1622927632.4997005-CDS-E-siliculosus-1a_F_contig1125:6939..73791622927632.4997005-CDS-E-siliculosus-1a_F_contig1125:6939..7379Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1125 6940..7379 -
1696318618.3647754-CDS-E-siliculosus-1a_F_contig1125:6939..73791696318618.3647754-CDS-E-siliculosus-1a_F_contig1125:6939..7379Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1125 6940..7379 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1125.829.1prot_E-siliculosus-1a_F_contig1125.829.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1125 2487..7379 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1125.829.1

>prot_E-siliculosus-1a_F_contig1125.829.1 ID=prot_E-siliculosus-1a_F_contig1125.829.1|Name=mRNA_E-siliculosus-1a_F_contig1125.829.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=324bp
MGRDSALAAVALAVALLSRQSLGFHIPAASSRRSLQQRSPHSAASPPPNQ
QRRPTLPTRSLLRCPLAAEADDGGGGGGFSSAAAGGEKRSRKAAKKAKAR
GGAGPAVELKKDANKQPQEVSKSVVAEVLGAQAAKEGGATADQVSARKEI
ERMETEERERIAKRQERIDSVMQAKAATEGDPDAGSIPEIVSNRMLSRMV
PFFLLPALGGVGVFVAVYVLSHKYDYTIPAYIVAYATQAPFFVALAGITY
AIMSASWDEDREGTFFGFDEAKRNFGNIVEGLRRSSDRMDVEDMLADQER
MTMNRRQRRQMRKEDGGDDEPTA*
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mRNA from alignment at E-siliculosus-1a_F_contig1125:1455..7435-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1125.829.1 ID=mRNA_E-siliculosus-1a_F_contig1125.829.1|Name=mRNA_E-siliculosus-1a_F_contig1125.829.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5981bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1125:1455..7435- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACGCGCACGTACACACGTAGTAGGGCGGACTGACCGGCTCCCCGGCAAG
CGCACCATGGGCAGAGACTCTGCATTAGCCGCCGTCGCCCTGGCCGTGGC
CCTGCTCTCGCGGCAAAGCCTCGGCTTCCACATCCCGGCGGCTTCCTCTC
GACGATCGCTTCAACAACGCTCCCCTCATTCCGCCGCATCTCCTCCTCCA
AACCAGCAACGCCGCCCGACGCTGCCGACGAGAAGCTTGCTGCGCTGCCC
CCTGGCAGCAGAGGCCGACGATGGTGGGGGCGGTGGGGGCTTCAGCTCTG
CGGCGGCGGGGGGAGAGAAGCGGTCTCGCAAGGCCGCTAAGAAGGCGAAG
GCGAGAGGCGGGGCTGGCCCCGCTGTGGAGCTCAAGAAGGACGCCAACAA
GCAGCCGCAGGAGGTGAGCAAGTCGGTCGTGGCGGAGGTGCTGGGCGCCC
AGGCCGCGAAGGAGGGAGGGGCCACCGCGGACCAGGTGTCGGCCAGGTGA
GAGAGTGTATCCCGTCGCTCCTGCGCCTTATCTGGAGCATGGATCACGTT
CATACATTTTGGGGGCAAATTTTTGACACGGCAGGTTCAGCAGATACACC
TGTGTTGCCCCTGGGGATGTGCCGGGGATCCCGGATCCCGAAGAAGTAGA
TTGTGTGAAGCAAACGCCGCACCCTTGTGATGGAAACGCCTGTTTTGTGT
GCTCGTCTCAATCGCTGTCTCCTACTTGAACAATCACTCAGTTGATGTAT
ATCGCTCTCGCTCTCGCAGATAAACTCAGATGAGTGCCATGTGGACACAG
AGCGGTGGTGTGTGTTGGAGGTAGCCTCGTTACTTGTCGTTACTGATACT
TTTTCCAAGAGCCCGCAATTTCCAACAGCCCGCAATTTACTGTGGCACTC
AAGCAATGATGGAGTTGGTACCTCATCTTGTGCTGCCTTGTGGCAAAAGA
AGGGAAGCTCGAGCGAACAGAACCGCAGAGGAGAAGTGCCCCAGTAGAAG
CAGTGACAGCGGTGATCGCACACCCCCTTTGACTGGTTCCCCAAAAGCTC
GATTACCTGCCACAACCGAGAGGGTGCTATCACAAAAACCGGCCGATACG
ATCAAGGCAAGCTCTCGCCGAAAGCTCCGACGCCATTCTTGGTATCGGCA
GCCTCTTGACTGTGGAACAGTAGAGCTATGAAAACCGGTCTAAAGGGGTG
TGCGATCACTTGACGGCTGTTATATACCGTACGCTACCTGCGGCATGAAA
GTACCGTAGGTGACGCAAGATACCACACTCCCCGGACCGATTTTCGAAGC
TCGATTACTCCACGAAGAAGAGGATGCATGCATGAAACGATACGTTTTCT
GAAAGCTCTCGATGAGATAGCTTCAACGTCGCCGTTTTCGGGGCTGCCGC
TATTTCTGCTATGGAGAAATCGAGCTTCCGAAGTGGGTCCAGAGGGTGTG
ATATCTTCTGTCACCTACGGTATGACCCCCCCCCCCCCCTGGGTCTTTCG
TAGAATGGAAACCCCGCGTGCGTCCTTGACGCGGTGGTCCTGTGGTCTTT
GCAGACGGGAGAGGAGGGCACCACCCTGCTAGTGGCTAATGCTTTCCATC
AATTCTTGGTTCGACGGCGGCCAGGAGGGTGTTTGCAGCCGCTCCTGCTG
CTATTGTTGATTTGGCTCCTCTCCTGCAGCTCCTCTTTTCTCTTCTCCTG
ATGATGCTGCTGCTGCTCCTGCTGCTGCCGCTCTCTACTGATCGGCTGAT
GCTTCCTCCCTGAAGTACATCTCGACTGTCTGTAGTTGGGTGCAAGTGAT
GCGCGAGTTTGAATGCGTGTCGAACCTTGTCCGCCATTCTTTTTTTTTGT
ATTTTTCAGGAAAGAGATCGAGAGGATGGAAACGGAGGAGCGCGAGCGTA
TTGCTAAGCGCCAGGAGCGCATCGACAGCGTAATGCAGGTGATTCGCCTC
GACCCACTACCGTGCGACGAATGGATGATTCATTTCGGAACCGGTGTTCC
GTGCCTCCATGGCACCAGTCATGACGTCCGCCATGAAGGTGGTTGGCGAG
ACGAGCGAGGGAAACGATAAGCCGCGTCGGAGCTATCACGGGGCTATTTC
GCCCATGCTGCCGCTTGCTTGTGGGATCTTCCGCTCTTTCTCCTTCTCGT
CTTCGTGCAATGGCCCGACAAGCTATTCTTCTTTAGGTTGCAAGTACTGC
TGGCCTAAATGTCTGCCTAACTGTGCTGGCCCCGAGGATACCTTCTGAGA
CACTCTTTCCTGATCAACCACCTGAAAATAGTATCCATGAAAGCGCTGGA
CGAAAAGAACAGTTTTCTTGCGACTTTTCTTCCGAGTCGATTTTTTTGTT
GCTTTGTATTCGGTTGGTCACCTCGGGCATTGAGGGGAACCCCGACGTCA
GCCCTAGGCCTCACGGTTCCACATTTTCTCGATTGACGAGATGGTGTACA
GTTCTGGCCGTTGCAGCCTACGTACTCCCTGATTTCGATGACCCTTATCC
TTCCGATTTCCCTCTTTTGTTTTGTGCGTGTTTCTTCATGGCTTCTGTTC
CTTTTTCTCACCGTAGGCGAAAGCGGCAACGGAAGGGGATCCGGATGCCG
GCAGCATCCCGGAGATCGTGTCCAACCGCATGCTCTCGAGGATGGTGAGG
GGGGGGGGGGGGGGCGTAGATGATGTGGACAGAGCCGGGGCACAGGAGTT
GATGTCGCCCATTGCAGCTAGCGACATTGCACTGGGCAAGGATTCTGGAA
GGTCAAGGAGTCTGGCAAGCTGCGGTGGTGCTGCTGTCGATACACCCTCA
CGCCCAGCATGGCGAATCCCATCCGTCGTTTTTCCATGTCTTATGTTTCT
CCTCGGTTTGGTCGCCGTTTGTCTTGAGTGCGTGCCCCGCCGTACCACGC
AAGAAGGAGTCAGTCCCCTTCGTCGATCAAGCTTGATGGCGTGCCGGTGT
TTTTGCAGTGCTTCGTTTTTTTCTGGGGCGGTATGAGGACGTCGGCAAAC
ACAGGCTCTCACACAAGCTTACAAATACCCGCTCCCTCCCCCCCCCCCCT
CGCGGATTGCACGCGTTCGCTCGCCCTTGTCGCGCAGGTCCCGTTCTTTT
TGCTTCCGGCGCTCGGCGGTGTCGGAGTGTTTGTGGCTGTGTACGTGCTG
TCTCACAAGTACGACGTGAGTTGGCGTCTGGCGATTGCTCGTGGGTTTGG
ATGGGTGTGCTACAATAGGTGCTGCTCTGTTCGTGTGACGACGATGCTTT
TCTTTGGTCGTCGAAATGTGGTATGCGCTACTTGCTTGGGGCACACGGTG
GAGCTCGGTCATTCGCTCGTTTTTGCTGATGATGATTCGGTGGCGAGACT
ACGCACGCTGCCCGCAATCAGCGGCTTTTTTGTGGTGTCCATTCCTATCC
AGGTGCCCCCCCCCCACCCCCCACCCCGTTCCCCCAAACGACGGGACAGA
TAGGGCCGGCGTGTGTGAAAAAGGCCGAAGACAAGGATCAATCAACTCTA
ACGATCACCCCCCCGCTCCCCTCGCTATCTTGCTTTTTTTGTTCCCCCCC
CTGTCCGCTCTACTGGTCCTCTGTTCAGTACACCATCCCGGCGTACATCG
TGGCGTACGCTACACAGGCGCCGTTTTTCGTGGCGCTAGCGGGCATCACG
TACGCCATCATGTCGGCCAGCTGGGACGAGGATGTGAGATTTTCGCACAT
TTTTTACCCTTCCGCGTTTTTTTTTCTTGCGAGAGAGAGAGAGAGAGAGA
GAGAGAGGGATTGCCAAGCATACGCGGGATTTGGGCCAGAGAGGTTTTCC
CAGCGCGCATCGAGAGGCTCTTCCTTGCTGTTGTAATTTTGGACGTCCTT
GTGCTTTTTTCTTTCGTCTCAGCGCAGACCGAAAGGGGGGGTTCTGTTAG
AGGCCGGGCGGAACACGGAGGATTTTCCGCACCCGAGGGAGTCGCGTGAT
GTCATATACTCGAGCCGTGCGCGCGTAACGTCATGACACTTGTCGAGCTA
TATCCTTTCACCTGTAAAGGCACACATGACGACGATACCGCAGACTTCCT
TTTTCGTCGTTCGTTGTACCCGGGGGTAACGTGGTTGATCCCCCTTGTTT
TGGTGCGTGCTTGGCGCGTCCTCTCTCTGCTTGTCCTCCTATCTCCCTAT
CCTTTCCGCGCGCAGAGAGAGGGGACTTTCTTCGGGTTTGACGAGGCGAA
GCGCAACTTCGGCAACATCGTGGAGGGCCTCAGACGATCGTCTGACAGGA
TGGACGTTGAGGACATGCTCGCTGACCAGGCGAGTTTTTAGAAATTGTAA
CTTACAATCACTGAACGAATTTACAATCACTGAACGAGACAATTCCCCAG
TCGAAGGGAGTGTTGGAAGTCTCAAGTCTTTTCGGCAGTGAGTGGTCAAG
AAAACGTGCTATTTAGATGTCTGTTTCAAGCCTATTCATTGAATTGTCAG
TGATATGTAGCTGGTTCACTGAAGTTACCAGTGATGATAGCTGGTACTAA
ATTGAAGACAACCCAAGTTTAAACTGTATATACCGACCAGGCGGGTTTGC
ATGCAGACGAGGGGGCAGAGCAAGCAACAATTTATCTTTGCTTGAGCGGG
GGTCTGTCCCATCACATGTACAAACGCAGGTTTTACCCTGGAACCGTTCG
CGCCGCCGGTGGCGTCTCCCATTTTTTGTCCTGACAAAGTTTCTGGGCGT
TATAGAGCAGGTTGTGGGTCGACCCGGGGTGCGGGGTGTCGGATGTGATA
CCATTTTTTTATTTTAACATGTGTGTACGTACAGTGCTGCTGTCGTTTTG
CACGCGTTTTGCACTGAGCTCGAAATCCCCGTCCCCATCTCCCTCTCAAT
ATCGTGCGCTCCAATCTTCAGGAGCGAATGACCATGAACCGGCGCCAACG
ACGCCAGATGCGGAAAGAGGACGGCGGAGACGATGAGCCGACGGCGTGAT
AGGACCCGTTCCTCTCTCCCGCCCGCTGCCAGCGCTTGCACACACACGCG
CATCTACATCGATGTCGAGAATTCGTTATTTCCGTGTTGGCAGTTTCGTT
TTCCTACATATTCCCCTCGCCAACCAAAAGGTGGGGTGCTTCTTTTGCGC
TATTCCAGAGGCGAGAGGATGGAAGCACGACGAGATTCACGCAAATTGGC
GCAAGATGGGTCGGCAGATTCGAGGCCCGGGGGATTGTGCAGGCACACGC
ATTAATATTAGGTGGCTGCAGCAAGTCGGCCAGCCGTGTGCTGTGGCCGG
GCACGCGCCACTCAGGAGAGGGTATGTGCGTGTGTGTGTGGGGGTATTGT
GCGTGAGCCCGGCAAGAGCCGGAAGCGCGCGCGGTCTATCTTAGCTCGTA
GAGCTGGTCGCCGATCTGTTACACGGAGTGGGAGCCTGTTTGTTGGGTGT
CCGAACAACACGCCAATCCTGCGGAGTAGGTATGCGTACATTTCGACCAG
GTTTTGTCGAGACACCGTACGTAGTTTCCTCTTGAAAGCTGAATTTCTCT
GTCTGAAGGCTCGGTGCCTTGTATTTTCTTTGTTTGCATTGGTCTTGCAT
TGTTTACGTTGTTCGTAGAGACTCACCATGTGTGTCGTAGAAAGTACGCA
TGTGTGGAGCAGCGAGTAGGTGTTGCTGTAGCTTTGGCCTTGCGGAGACA
CCCTGCCTGCGATAAAGAGTAAGTATCCTTCCAAGAAGAAGCTCCGCCGT
ACGGGCGTCGGAAGACCGGGCGTCGTGTTCGCCTTCTTCACGACTGTTTT
GCGGTTGCGAGTGACCAAGAAACACTCGACGGAAAACACACGCACACTTC
CAACACGAGTCATCCATGGCAATTTGCAGTCGAGAGGCGGGAGAGCTCTC
ACACCAAGGAAGACGAGACAAGAACACTTTCTTTCTTGTGCAATCACCGG
GATCCAACGTCTCGAAGAGTAGGTTAGCTGGGAGAGTTAGCTTCTCGGAA
GGCACTGAGGCTTTTCTCTCTCTGAGGGCCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1125:1455..7435-

>mRNA_E-siliculosus-1a_F_contig1125.829.1 ID=mRNA_E-siliculosus-1a_F_contig1125.829.1|Name=mRNA_E-siliculosus-1a_F_contig1125.829.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1944bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1125:1455..7435- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGCAGAGACTCTGCATTAGCCGCCGTCGCCCTGGCCGTGGCCCTGCT
CTCGCGGCAAAGCCTCGGCTTCCACATCCCGGCGGCTTCCTCTCGACGAT
CGCTTCAACAACGCTCCCCTCATTCCGCCGCATCTCCTCCTCCAAACCAG
CAACGCCGCCCGACGCTGCCGACGAGAAGCTTGCTGCGCTGCCCCCTGGC
AGCAGAGGCCGACGATGGTGGGGGCGGTGGGGGCTTCAGCTCTGCGGCGG
CGGGGGGAGAGAAGCGGTCTCGCAAGGCCGCTAAGAAGGCGAAGGCGAGA
GGCGGGGCTGGCCCCGCTGTGGAGCTCAAGAAGGACGCCAACAAGCAGCC
GCAGGAGGTGAGCAAGTCGGTCGTGGCGGAGGTGCTGGGCGCCCAGGCCG
CGAAGGAGGGAGGGGCCACCGCGGACCAGGTGTCGGCCAGATGGGCAGAG
ACTCTGCATTAGCCGCCGTCGCCCTGGCCGTGGCCCTGCTCTCGCGGCAA
AGCCTCGGCTTCCACATCCCGGCGGCTTCCTCTCGACGATCGCTTCAACA
ACGCTCCCCTCATTCCGCCGCATCTCCTCCTCCAAACCAGCAACGCCGCC
CGACGCTGCCGACGAGAAGCTTGCTGCGCTGCCCCCTGGCAGCAGAGGCC
GACGATGGTGGGGGCGGTGGGGGCTTCAGCTCTGCGGCGGCGGGGGGAGA
GAAGCGGTCTCGCAAGGCCGCTAAGAAGGCGAAGGCGAGAGGCGGGGCTG
GCCCCGCTGTGGAGCTCAAGAAGGACGCCAACAAGCAGCCGCAGGAGGTG
AGCAAGTCGGTCGTGGCGGAGGTGCTGGGCGCCCAGGCCGCGAAGGAGGG
AGGGGCCACCGCGGACCAGGTGTCGGCCAGGAAAGAGATCGAGAGGATGG
AAACGGAGGAGCGCGAGCGTATTGCTAAGCGCCAGGAGCGCATCGACAGC
GTAATGCAGGAAAGAGATCGAGAGGATGGAAACGGAGGAGCGCGAGCGTA
TTGCTAAGCGCCAGGAGCGCATCGACAGCGTAATGCAGGCGAAAGCGGCA
ACGGAAGGGGATCCGGATGCCGGCAGCATCCCGGAGATCGTGTCCAACCG
CATGCTCTCGAGGATGGCGAAAGCGGCAACGGAAGGGGATCCGGATGCCG
GCAGCATCCCGGAGATCGTGTCCAACCGCATGCTCTCGAGGATGGTCCCG
TTCTTTTTGCTTCCGGCGCTCGGCGGTGTCGGAGTGTTTGTGGCTGTGTA
CGTGCTGTCTCACAAGTACGACGTCCCGTTCTTTTTGCTTCCGGCGCTCG
GCGGTGTCGGAGTGTTTGTGGCTGTGTACGTGCTGTCTCACAAGTACGAC
TACACCATCCCGGCGTACATCGTGGCGTACGCTACACAGGCGCCGTTTTT
CGTGGCGCTAGCGGGCATCACGTACGCCATCATGTCGGCCAGCTGGGACG
AGGATTACACCATCCCGGCGTACATCGTGGCGTACGCTACACAGGCGCCG
TTTTTCGTGGCGCTAGCGGGCATCACGTACGCCATCATGTCGGCCAGCTG
GGACGAGGATAGAGAGGGGACTTTCTTCGGGTTTGACGAGGCGAAGCGCA
ACTTCGGCAACATCGTGGAGGGCCTCAGACGATCGTCTGACAGGATGGAC
GTTGAGGACATGCTCGCTGACCAGAGAGAGGGGACTTTCTTCGGGTTTGA
CGAGGCGAAGCGCAACTTCGGCAACATCGTGGAGGGCCTCAGACGATCGT
CTGACAGGATGGACGTTGAGGACATGCTCGCTGACCAGGAGCGAATGACC
ATGAACCGGCGCCAACGACGCCAGATGCGGAAAGAGGACGGCGGAGACGA
TGAGCCGACGGCGTGAGAGCGAATGACCATGAACCGGCGCCAACGACGCC
AGATGCGGAAAGAGGACGGCGGAGACGATGAGCCGACGGCGTGA
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